miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>33834_oar-mir-382:mirbase
Length = 126
Score = 250 bits (126), Expect = 2e-67
Identities = 126/126 (100%)
Strand = Plus / Plus
Query: 1 ccctgctctgtcttgcctctgcctttctgtggtacttgaagagaagttgttcgtggtgga 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 ccctgctctgtcttgcctctgcctttctgtggtacttgaagagaagttgttcgtggtgga 60
Query: 61 ttcgctttacttatgacgaatcattcacggacaacacttttttcagtaccaaatactacc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 ttcgctttacttatgacgaatcattcacggacaacacttttttcagtaccaaatactacc 120
Query: 121 tctaag 126
||||||
Sbjct: 121 tctaag 126
>33092_rno-mir-3592:mirbase
Length = 116
Score = 194 bits (98), Expect = 1e-50
Identities = 107/110 (97%)
Strand = Plus / Minus
Query: 17 ctctgcctttctgtggtacttgaagagaagttgttcgtggtggattcgctttacttatga 76
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 113 ctctgcttttctgtggtacttgaagagaagttgttcgtggtggattcgctttacttgtga 54
Query: 77 cgaatcattcacggacaacacttttttcagtaccaaatactacctctaag 126
|||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 53 cgaatcattcacggacaacacttttttcagtaccaaatgctacctctaag 4
>33788_bta-mir-3578:mirbase
Length = 86
Score = 170 bits (86), Expect = 2e-43
Identities = 86/86 (100%)
Strand = Plus / Minus
Query: 28 tgtggtacttgaagagaagttgttcgtggtggattcgctttacttatgacgaatcattca 87
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 86 tgtggtacttgaagagaagttgttcgtggtggattcgctttacttatgacgaatcattca 27
Query: 88 cggacaacacttttttcagtaccaaa 113
||||||||||||||||||||||||||
Sbjct: 26 cggacaacacttttttcagtaccaaa 1
>34085_ssc-mir-382:mirbase
Length = 77
Score = 153 bits (77), Expect = 4e-38
Identities = 77/77 (100%)
Strand = Plus / Plus
Query: 34 acttgaagagaagttgttcgtggtggattcgctttacttatgacgaatcattcacggaca 93
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 acttgaagagaagttgttcgtggtggattcgctttacttatgacgaatcattcacggaca 60
Query: 94 acacttttttcagtacc 110
|||||||||||||||||
Sbjct: 61 acacttttttcagtacc 77
>27164_eca-mir-382:mirbase
Length = 76
Score = 151 bits (76), Expect = 1e-37
Identities = 76/76 (100%)
Strand = Plus / Plus
Query: 33 tacttgaagagaagttgttcgtggtggattcgctttacttatgacgaatcattcacggac 92
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 tacttgaagagaagttgttcgtggtggattcgctttacttatgacgaatcattcacggac 60
Query: 93 aacacttttttcagta 108
||||||||||||||||
Sbjct: 61 aacacttttttcagta 76
>27888_mml-mir-382:mirbase
Length = 76
Score = 151 bits (76), Expect = 1e-37
Identities = 76/76 (100%)
Strand = Plus / Plus
Query: 33 tacttgaagagaagttgttcgtggtggattcgctttacttatgacgaatcattcacggac 92
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 tacttgaagagaagttgttcgtggtggattcgctttacttatgacgaatcattcacggac 60
Query: 93 aacacttttttcagta 108
||||||||||||||||
Sbjct: 61 aacacttttttcagta 76
>28635_hsa-mir-382:mirbase
Length = 76
Score = 151 bits (76), Expect = 1e-37
Identities = 76/76 (100%)
Strand = Plus / Plus
Query: 33 tacttgaagagaagttgttcgtggtggattcgctttacttatgacgaatcattcacggac 92
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 tacttgaagagaagttgttcgtggtggattcgctttacttatgacgaatcattcacggac 60
Query: 93 aacacttttttcagta 108
||||||||||||||||
Sbjct: 61 aacacttttttcagta 76
>32898_rno-mir-382:mirbase
Length = 80
Score = 151 bits (76), Expect = 1e-37
Identities = 79/80 (98%)
Strand = Plus / Plus
Query: 31 ggtacttgaagagaagttgttcgtggtggattcgctttacttatgacgaatcattcacgg 90
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 1 ggtacttgaagagaagttgttcgtggtggattcgctttacttgtgacgaatcattcacgg 60
Query: 91 acaacacttttttcagtacc 110
||||||||||||||||||||
Sbjct: 61 acaacacttttttcagtacc 80
>33359_bta-mir-382:mirbase
Length = 76
Score = 151 bits (76), Expect = 1e-37
Identities = 76/76 (100%)
Strand = Plus / Plus
Query: 33 tacttgaagagaagttgttcgtggtggattcgctttacttatgacgaatcattcacggac 92
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 tacttgaagagaagttgttcgtggtggattcgctttacttatgacgaatcattcacggac 60
Query: 93 aacacttttttcagta 108
||||||||||||||||
Sbjct: 61 aacacttttttcagta 76
>30362_ptr-mir-382:mirbase
Length = 75
Score = 149 bits (75), Expect = 6e-37
Identities = 75/75 (100%)
Strand = Plus / Plus
Query: 34 acttgaagagaagttgttcgtggtggattcgctttacttatgacgaatcattcacggaca 93
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 acttgaagagaagttgttcgtggtggattcgctttacttatgacgaatcattcacggaca 60
Query: 94 acacttttttcagta 108
|||||||||||||||
Sbjct: 61 acacttttttcagta 75
>30989_ppy-mir-382:mirbase
Length = 76
Score = 143 bits (72), Expect = 4e-35
Identities = 75/76 (98%)
Strand = Plus / Plus
Query: 33 tacttgaagagaagttgttcgtggtggattcgctttacttatgacgaatcattcacggac 92
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 1 tacttgaagagaagttgttcgtggtggattccctttacttatgacgaatcattcacggac 60
Query: 93 aacacttttttcagta 108
||||||||||||||||
Sbjct: 61 aacacttttttcagta 76
>32055_mmu-mir-382:mirbase
Length = 76
Score = 143 bits (72), Expect = 4e-35
Identities = 75/76 (98%)
Strand = Plus / Plus
Query: 33 tacttgaagagaagttgttcgtggtggattcgctttacttatgacgaatcattcacggac 92
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 1 tacttgaagagaagttgttcgtggtggattcgctttacttgtgacgaatcattcacggac 60
Query: 93 aacacttttttcagta 108
||||||||||||||||
Sbjct: 61 aacacttttttcagta 76
>26833_cfa-mir-382:mirbase
Length = 57
Score = 113 bits (57), Expect = 3e-26
Identities = 57/57 (100%)
Strand = Plus / Plus
Query: 44 aagttgttcgtggtggattcgctttacttatgacgaatcattcacggacaacacttt 100
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 aagttgttcgtggtggattcgctttacttatgacgaatcattcacggacaacacttt 57
>28312_ggo-mir-154:mirbase
Length = 84
Score = 44.1 bits (22), Expect = 2e-05
Identities = 52/62 (83%)
Strand = Plus / Plus
Query: 29 gtggtacttgaagagaagttgttcgtggtggattcgctttacttatgacgaatcattcac 88
|||||||||||||| | ||| | |||| || ||||||||| || ||||||||||| |||
Sbjct: 1 gtggtacttgaagataggttatccgtgttgccttcgctttatttgtgacgaatcatacac 60
Query: 89 gg 90
||
Sbjct: 61 gg 62
>28481_hsa-mir-154:mirbase
Length = 84
Score = 44.1 bits (22), Expect = 2e-05
Identities = 52/62 (83%)
Strand = Plus / Plus
Query: 29 gtggtacttgaagagaagttgttcgtggtggattcgctttacttatgacgaatcattcac 88
|||||||||||||| | ||| | |||| || ||||||||| || ||||||||||| |||
Sbjct: 1 gtggtacttgaagataggttatccgtgttgccttcgctttatttgtgacgaatcatacac 60
Query: 89 gg 90
||
Sbjct: 61 gg 62
>30101_ppa-mir-154:mirbase
Length = 84
Score = 44.1 bits (22), Expect = 2e-05
Identities = 52/62 (83%)
Strand = Plus / Plus
Query: 29 gtggtacttgaagagaagttgttcgtggtggattcgctttacttatgacgaatcattcac 88
|||||||||||||| | ||| | |||| || ||||||||| || ||||||||||| |||
Sbjct: 1 gtggtacttgaagataggttatccgtgttgccttcgctttatttgtgacgaatcatacac 60
Query: 89 gg 90
||
Sbjct: 61 gg 62
>30249_ptr-mir-154:mirbase
Length = 84
Score = 44.1 bits (22), Expect = 2e-05
Identities = 52/62 (83%)
Strand = Plus / Plus
Query: 29 gtggtacttgaagagaagttgttcgtggtggattcgctttacttatgacgaatcattcac 88
|||||||||||||| | ||| | |||| || ||||||||| || ||||||||||| |||
Sbjct: 1 gtggtacttgaagataggttatccgtgttgccttcgctttatttgtgacgaatcatacac 60
Query: 89 gg 90
||
Sbjct: 61 gg 62
>30863_ppy-mir-154:mirbase
Length = 84
Score = 44.1 bits (22), Expect = 2e-05
Identities = 52/62 (83%)
Strand = Plus / Plus
Query: 29 gtggtacttgaagagaagttgttcgtggtggattcgctttacttatgacgaatcattcac 88
|||||||||||||| | ||| | |||| || ||||||||| || ||||||||||| |||
Sbjct: 1 gtggtacttgaagataggttatccgtgttgccttcgctttatttgtgacgaatcatacac 60
Query: 89 gg 90
||
Sbjct: 61 gg 62
>33242_bta-mir-154:mirbase
Length = 84
Score = 44.1 bits (22), Expect = 2e-05
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 61 ttcgctttacttatgacgaatcattcacgg 90
|||||||||||| ||||||||||| |||||
Sbjct: 33 ttcgctttacttgtgacgaatcatacacgg 62
>33799_oar-mir-154a:mirbase
Length = 105
Score = 44.1 bits (22), Expect = 2e-05
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 61 ttcgctttacttatgacgaatcattcacgg 90
|||||||||||| ||||||||||| |||||
Sbjct: 42 ttcgctttacttgtgacgaatcatacacgg 71
>33800_oar-mir-154a:mirbase
Length = 105
Score = 44.1 bits (22), Expect = 2e-05
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 61 ttcgctttacttatgacgaatcattcacgg 90
|||||||||||| ||||||||||| |||||
Sbjct: 42 ttcgctttacttgtgacgaatcatacacgg 71
>33852_oar-mir-487a:mirbase
Length = 103
Score = 42.1 bits (21), Expect = 1e-04
Identities = 48/57 (84%)
Strand = Plus / Plus
Query: 61 ttcgctttacttatgacgaatcattcacggacaacacttttttcagtaccaaatact 117
|||||| || |||||||||||||| || ||||| | |||||||||| ||||||||
Sbjct: 41 ttcgctgtatttatgacgaatcatacagggacatccagtttttcagtatcaaatact 97
>33853_oar-mir-487a:mirbase
Length = 103
Score = 42.1 bits (21), Expect = 1e-04
Identities = 48/57 (84%)
Strand = Plus / Plus
Query: 61 ttcgctttacttatgacgaatcattcacggacaacacttttttcagtaccaaatact 117
|||||| || |||||||||||||| || ||||| | |||||||||| ||||||||
Sbjct: 41 ttcgctgtatttatgacgaatcatacagggacatccagtttttcagtatcaaatact 97
>27765_mml-mir-154:mirbase
Length = 84
Score = 40.1 bits (20), Expect = 4e-04
Identities = 50/60 (83%)
Strand = Plus / Plus
Query: 31 ggtacttgaagagaagttgttcgtggtggattcgctttacttatgacgaatcattcacgg 90
|||||||||||| | ||| | |||| || ||||||||| || ||||||||||| |||||
Sbjct: 3 ggtacttgaagataggttatccgtgttgccttcgctttatttgtgacgaatcatacacgg 62
>28220_mne-mir-154:mirbase
Length = 84
Score = 40.1 bits (20), Expect = 4e-04
Identities = 50/60 (83%)
Strand = Plus / Plus
Query: 31 ggtacttgaagagaagttgttcgtggtggattcgctttacttatgacgaatcattcacgg 90
|||||||||||| | ||| | |||| || ||||||||| || ||||||||||| |||||
Sbjct: 3 ggtacttgaagataggttatccgtgttgccttcgctttatttgtgacgaatcatacacgg 62
