miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>33836_oar-mir-409:mirbase
Length = 101
Score = 200 bits (101), Expect = 1e-52
Identities = 101/101 (100%)
Strand = Plus / Plus
Query: 1 cctctccatggtacgcggggagaggttacccgagcaactttgcatctggacgacgaatgt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 cctctccatggtacgcggggagaggttacccgagcaactttgcatctggacgacgaatgt 60
Query: 61 tgctcggtgaaccccttttcggtatcaaaatccatcagaga 101
|||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 tgctcggtgaaccccttttcggtatcaaaatccatcagaga 101
>33361_bta-mir-409a:mirbase
Length = 79
Score = 157 bits (79), Expect = 2e-39
Identities = 79/79 (100%)
Strand = Plus / Plus
Query: 9 tggtacgcggggagaggttacccgagcaactttgcatctggacgacgaatgttgctcggt 68
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 tggtacgcggggagaggttacccgagcaactttgcatctggacgacgaatgttgctcggt 60
Query: 69 gaaccccttttcggtatca 87
|||||||||||||||||||
Sbjct: 61 gaaccccttttcggtatca 79
>33362_bta-mir-409b:mirbase
Length = 79
Score = 157 bits (79), Expect = 2e-39
Identities = 79/79 (100%)
Strand = Plus / Minus
Query: 9 tggtacgcggggagaggttacccgagcaactttgcatctggacgacgaatgttgctcggt 68
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 79 tggtacgcggggagaggttacccgagcaactttgcatctggacgacgaatgttgctcggt 20
Query: 69 gaaccccttttcggtatca 87
|||||||||||||||||||
Sbjct: 19 gaaccccttttcggtatca 1
>27167_eca-mir-409:mirbase
Length = 79
Score = 149 bits (75), Expect = 5e-37
Identities = 78/79 (98%)
Strand = Plus / Plus
Query: 9 tggtacgcggggagaggttacccgagcaactttgcatctggacgacgaatgttgctcggt 68
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 tggtactcggggagaggttacccgagcaactttgcatctggacgacgaatgttgctcggt 60
Query: 69 gaaccccttttcggtatca 87
|||||||||||||||||||
Sbjct: 61 gaaccccttttcggtatca 79
>27168_eca-mir-409:mirbase
Length = 79
Score = 149 bits (75), Expect = 5e-37
Identities = 78/79 (98%)
Strand = Plus / Plus
Query: 9 tggtacgcggggagaggttacccgagcaactttgcatctggacgacgaatgttgctcggt 68
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 tggtactcggggagaggttacccgagcaactttgcatctggacgacgaatgttgctcggt 60
Query: 69 gaaccccttttcggtatca 87
|||||||||||||||||||
Sbjct: 61 gaaccccttttcggtatca 79
>27891_mml-mir-409:mirbase
Length = 79
Score = 149 bits (75), Expect = 5e-37
Identities = 78/79 (98%)
Strand = Plus / Plus
Query: 9 tggtacgcggggagaggttacccgagcaactttgcatctggacgacgaatgttgctcggt 68
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 tggtactcggggagaggttacccgagcaactttgcatctggacgacgaatgttgctcggt 60
Query: 69 gaaccccttttcggtatca 87
|||||||||||||||||||
Sbjct: 61 gaaccccttttcggtatca 79
>27892_mml-mir-409:mirbase
Length = 79
Score = 149 bits (75), Expect = 5e-37
Identities = 78/79 (98%)
Strand = Plus / Plus
Query: 9 tggtacgcggggagaggttacccgagcaactttgcatctggacgacgaatgttgctcggt 68
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 tggtactcggggagaggttacccgagcaactttgcatctggacgacgaatgttgctcggt 60
Query: 69 gaaccccttttcggtatca 87
|||||||||||||||||||
Sbjct: 61 gaaccccttttcggtatca 79
>28638_hsa-mir-409:mirbase
Length = 79
Score = 149 bits (75), Expect = 5e-37
Identities = 78/79 (98%)
Strand = Plus / Plus
Query: 9 tggtacgcggggagaggttacccgagcaactttgcatctggacgacgaatgttgctcggt 68
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 tggtactcggggagaggttacccgagcaactttgcatctggacgacgaatgttgctcggt 60
Query: 69 gaaccccttttcggtatca 87
|||||||||||||||||||
Sbjct: 61 gaaccccttttcggtatca 79
>28639_hsa-mir-409:mirbase
Length = 79
Score = 149 bits (75), Expect = 5e-37
Identities = 78/79 (98%)
Strand = Plus / Plus
Query: 9 tggtacgcggggagaggttacccgagcaactttgcatctggacgacgaatgttgctcggt 68
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 tggtactcggggagaggttacccgagcaactttgcatctggacgacgaatgttgctcggt 60
Query: 69 gaaccccttttcggtatca 87
|||||||||||||||||||
Sbjct: 61 gaaccccttttcggtatca 79
>30992_ppy-mir-409:mirbase
Length = 79
Score = 149 bits (75), Expect = 5e-37
Identities = 78/79 (98%)
Strand = Plus / Plus
Query: 9 tggtacgcggggagaggttacccgagcaactttgcatctggacgacgaatgttgctcggt 68
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 tggtactcggggagaggttacccgagcaactttgcatctggacgacgaatgttgctcggt 60
Query: 69 gaaccccttttcggtatca 87
|||||||||||||||||||
Sbjct: 61 gaaccccttttcggtatca 79
>30993_ppy-mir-409:mirbase
Length = 79
Score = 149 bits (75), Expect = 5e-37
Identities = 78/79 (98%)
Strand = Plus / Plus
Query: 9 tggtacgcggggagaggttacccgagcaactttgcatctggacgacgaatgttgctcggt 68
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 tggtactcggggagaggttacccgagcaactttgcatctggacgacgaatgttgctcggt 60
Query: 69 gaaccccttttcggtatca 87
|||||||||||||||||||
Sbjct: 61 gaaccccttttcggtatca 79
>30364_ptr-mir-409:mirbase
Length = 78
Score = 147 bits (74), Expect = 2e-36
Identities = 77/78 (98%)
Strand = Plus / Plus
Query: 10 ggtacgcggggagaggttacccgagcaactttgcatctggacgacgaatgttgctcggtg 69
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 ggtactcggggagaggttacccgagcaactttgcatctggacgacgaatgttgctcggtg 60
Query: 70 aaccccttttcggtatca 87
||||||||||||||||||
Sbjct: 61 aaccccttttcggtatca 78
>33076_rno-mir-3581:mirbase
Length = 80
Score = 135 bits (68), Expect = 7e-33
Identities = 77/80 (96%)
Strand = Plus / Minus
Query: 9 tggtacgcggggagaggttacccgagcaactttgcatctggacgacgaatgttgctcggt 68
|||||| ||| ||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 80 tggtactcggagagaggttacccgagcaactttgcatctggaggacgaatgttgctcggt 21
Query: 69 gaaccccttttcggtatcaa 88
||||||||||||||||||||
Sbjct: 20 gaaccccttttcggtatcaa 1
>32059_mmu-mir-409:mirbase
Length = 79
Score = 133 bits (67), Expect = 3e-32
Identities = 76/79 (96%)
Strand = Plus / Plus
Query: 9 tggtacgcggggagaggttacccgagcaactttgcatctggacgacgaatgttgctcggt 68
|||||| ||| ||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 1 tggtactcggagagaggttacccgagcaactttgcatctggaggacgaatgttgctcggt 60
Query: 69 gaaccccttttcggtatca 87
|||||||||||||||||||
Sbjct: 61 gaaccccttttcggtatca 79
>32060_mmu-mir-409:mirbase
Length = 79
Score = 133 bits (67), Expect = 3e-32
Identities = 76/79 (96%)
Strand = Plus / Plus
Query: 9 tggtacgcggggagaggttacccgagcaactttgcatctggacgacgaatgttgctcggt 68
|||||| ||| ||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 1 tggtactcggagagaggttacccgagcaactttgcatctggaggacgaatgttgctcggt 60
Query: 69 gaaccccttttcggtatca 87
|||||||||||||||||||
Sbjct: 61 gaaccccttttcggtatca 79
>32902_rno-mir-409:mirbase
Length = 77
Score = 129 bits (65), Expect = 4e-31
Identities = 74/77 (96%)
Strand = Plus / Plus
Query: 10 ggtacgcggggagaggttacccgagcaactttgcatctggacgacgaatgttgctcggtg 69
||||| ||| ||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 1 ggtactcggagagaggttacccgagcaactttgcatctggaggacgaatgttgctcggtg 60
Query: 70 aaccccttttcggtatc 86
|||||||||||||||||
Sbjct: 61 aaccccttttcggtatc 77
>32903_rno-mir-409:mirbase
Length = 77
Score = 129 bits (65), Expect = 4e-31
Identities = 74/77 (96%)
Strand = Plus / Plus
Query: 10 ggtacgcggggagaggttacccgagcaactttgcatctggacgacgaatgttgctcggtg 69
||||| ||| ||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 1 ggtactcggagagaggttacccgagcaactttgcatctggaggacgaatgttgctcggtg 60
Query: 70 aaccccttttcggtatc 86
|||||||||||||||||
Sbjct: 61 aaccccttttcggtatc 77
>26836_cfa-mir-409:mirbase
Length = 54
Score = 99.6 bits (50), Expect = 4e-22
Identities = 53/54 (98%)
Strand = Plus / Plus
Query: 23 aggttacccgagcaactttgcatctggacgacgaatgttgctcggtgaacccct 76
|||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 1 aggttacccgagcaactttgcatctggacgacgaatgttgctcgttgaacccct 54
