miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>33838_oar-mir-410:mirbase
Length = 126
Score = 250 bits (126), Expect = 2e-67
Identities = 126/126 (100%)
Strand = Plus / Plus
Query: 1 cacctgcggtctgtggagtaggcgccactttgggtacttgaggagaggttgtctgtgatg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 cacctgcggtctgtggagtaggcgccactttgggtacttgaggagaggttgtctgtgatg 60
Query: 61 agttcgctttattaatgacgaatataacacagatggcctgttttcagtaccacccacccc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 agttcgctttattaatgacgaatataacacagatggcctgttttcagtaccacccacccc 120
Query: 121 tcgtgc 126
||||||
Sbjct: 121 tcgtgc 126
>33363_bta-mir-410:mirbase
Length = 81
Score = 161 bits (81), Expect = 2e-40
Identities = 81/81 (100%)
Strand = Plus / Plus
Query: 32 gggtacttgaggagaggttgtctgtgatgagttcgctttattaatgacgaatataacaca 91
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 gggtacttgaggagaggttgtctgtgatgagttcgctttattaatgacgaatataacaca 60
Query: 92 gatggcctgttttcagtacca 112
|||||||||||||||||||||
Sbjct: 61 gatggcctgttttcagtacca 81
>32061_mmu-mir-410:mirbase
Length = 81
Score = 153 bits (77), Expect = 4e-38
Identities = 80/81 (98%)
Strand = Plus / Plus
Query: 32 gggtacttgaggagaggttgtctgtgatgagttcgctttattaatgacgaatataacaca 91
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 gggtacttgaggagaggttgtctgtgatgagttcgctttattaatgacgaatataacaca 60
Query: 92 gatggcctgttttcagtacca 112
||||||||||||||| |||||
Sbjct: 61 gatggcctgttttcaatacca 81
>32904_rno-mir-410:mirbase
Length = 76
Score = 143 bits (72), Expect = 4e-35
Identities = 75/76 (98%)
Strand = Plus / Plus
Query: 36 acttgaggagaggttgtctgtgatgagttcgctttattaatgacgaatataacacagatg 95
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 acttgaggagaggttgtctgtgatgagttcgctttattaatgacgaatataacacagatg 60
Query: 96 gcctgttttcagtacc 111
||||||||||| ||||
Sbjct: 61 gcctgttttcaatacc 76
>27169_eca-mir-410:mirbase
Length = 74
Score = 139 bits (70), Expect = 6e-34
Identities = 73/74 (98%)
Strand = Plus / Plus
Query: 39 tgaggagaggttgtctgtgatgagttcgctttattaatgacgaatataacacagatggcc 98
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 tgaggagaggttgtctgtgatgagttcgctttattaatgacgaatataacacagatggcc 60
Query: 99 tgttttcagtacca 112
||| ||||||||||
Sbjct: 61 tgtcttcagtacca 74
>27893_mml-mir-410:mirbase
Length = 80
Score = 135 bits (68), Expect = 9e-33
Identities = 78/80 (97%), Gaps = 1/80 (1%)
Strand = Plus / Plus
Query: 33 ggtacttgaggagaggttgtctgtgatgagttcgcttt-attaatgacgaatataacaca 91
||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 1 ggtacctgaggagaggttgtctgtgatgagttcgcttttattaatgacgaatataacaca 60
Query: 92 gatggcctgttttcagtacc 111
||||||||||||||||||||
Sbjct: 61 gatggcctgttttcagtacc 80
>28640_hsa-mir-410:mirbase
Length = 80
Score = 127 bits (64), Expect = 2e-30
Identities = 77/80 (96%), Gaps = 1/80 (1%)
Strand = Plus / Plus
Query: 33 ggtacttgaggagaggttgtctgtgatgagttcgcttt-attaatgacgaatataacaca 91
||||| |||| ||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 1 ggtacctgagaagaggttgtctgtgatgagttcgcttttattaatgacgaatataacaca 60
Query: 92 gatggcctgttttcagtacc 111
||||||||||||||||||||
Sbjct: 61 gatggcctgttttcagtacc 80
>30994_ppy-mir-410:mirbase
Length = 80
Score = 127 bits (64), Expect = 2e-30
Identities = 77/80 (96%), Gaps = 1/80 (1%)
Strand = Plus / Plus
Query: 33 ggtacttgaggagaggttgtctgtgatgagttcgcttt-attaatgacgaatataacaca 91
||||| |||| ||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 1 ggtacctgagaagaggttgtctgtgatgagttcgcttttattaatgacgaatataacaca 60
Query: 92 gatggcctgttttcagtacc 111
||||||||||||||||||||
Sbjct: 61 gatggcctgttttcagtacc 80
>30365_ptr-mir-410:mirbase
Length = 79
Score = 125 bits (63), Expect = 8e-30
Identities = 76/79 (96%), Gaps = 1/79 (1%)
Strand = Plus / Plus
Query: 34 gtacttgaggagaggttgtctgtgatgagttcgcttt-attaatgacgaatataacacag 92
|||| |||| ||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 1 gtacctgagaagaggttgtctgtgatgagttcgcttttattaatgacgaatataacacag 60
Query: 93 atggcctgttttcagtacc 111
|||||||||||||||||||
Sbjct: 61 atggcctgttttcagtacc 79
>26837_cfa-mir-410:mirbase
Length = 56
Score = 103 bits (52), Expect = 3e-23
Identities = 55/56 (98%)
Strand = Plus / Plus
Query: 46 aggttgtctgtgatgagttcgctttattaatgacgaatataacacagatggcctgt 101
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 1 aggttgtctgtgatgagttcgctttattaatgccgaatataacacagatggcctgt 56
