miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>33841_oar-mir-411a:mirbase
Length = 125
Score = 248 bits (125), Expect = 8e-67
Identities = 125/125 (100%)
Strand = Plus / Plus
Query: 1 ccccagcctctgtcctcggcgtccctgtgtggtactcggagagatagtagaccgtatagc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 ccccagcctctgtcctcggcgtccctgtgtggtactcggagagatagtagaccgtatagc 60
Query: 61 gtacgctttatctgtgacgtatgtaacacggtccactaaccctcagtatcaaatccgtcc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 gtacgctttatctgtgacgtatgtaacacggtccactaaccctcagtatcaaatccgtcc 120
Query: 121 tcgag 125
|||||
Sbjct: 121 tcgag 125
>28641_hsa-mir-411:mirbase
Length = 96
Score = 167 bits (84), Expect = 2e-42
Identities = 93/96 (96%)
Strand = Plus / Plus
Query: 30 tggtactcggagagatagtagaccgtatagcgtacgctttatctgtgacgtatgtaacac 89
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 tggtacttggagagatagtagaccgtatagcgtacgctttatctgtgacgtatgtaacac 60
Query: 90 ggtccactaaccctcagtatcaaatccgtcctcgag 125
||||||||||||||||||||||||||| ||| ||||
Sbjct: 61 ggtccactaaccctcagtatcaaatccatccccgag 96
>30995_ppy-mir-411:mirbase
Length = 96
Score = 167 bits (84), Expect = 2e-42
Identities = 93/96 (96%)
Strand = Plus / Plus
Query: 30 tggtactcggagagatagtagaccgtatagcgtacgctttatctgtgacgtatgtaacac 89
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 tggtacttggagagatagtagaccgtatagcgtacgctttatctgtgacgtatgtaacac 60
Query: 90 ggtccactaaccctcagtatcaaatccgtcctcgag 125
||||||||||||||||||||||||||| ||| ||||
Sbjct: 61 ggtccactaaccctcagtatcaaatccatccccgag 96
>30366_ptr-mir-411:mirbase
Length = 95
Score = 165 bits (83), Expect = 1e-41
Identities = 92/95 (96%)
Strand = Plus / Plus
Query: 31 ggtactcggagagatagtagaccgtatagcgtacgctttatctgtgacgtatgtaacacg 90
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 ggtacttggagagatagtagaccgtatagcgtacgctttatctgtgacgtatgtaacacg 60
Query: 91 gtccactaaccctcagtatcaaatccgtcctcgag 125
|||||||||||||||||||||||||| ||| ||||
Sbjct: 61 gtccactaaccctcagtatcaaatccatccccgag 95
>27170_eca-mir-411:mirbase
Length = 82
Score = 155 bits (78), Expect = 9e-39
Identities = 81/82 (98%)
Strand = Plus / Plus
Query: 30 tggtactcggagagatagtagaccgtatagcgtacgctttatctgtgacgtatgtaacac 89
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 tggtacttggagagatagtagaccgtatagcgtacgctttatctgtgacgtatgtaacac 60
Query: 90 ggtccactaaccctcagtatca 111
||||||||||||||||||||||
Sbjct: 61 ggtccactaaccctcagtatca 82
>27894_mml-mir-411:mirbase
Length = 82
Score = 155 bits (78), Expect = 9e-39
Identities = 81/82 (98%)
Strand = Plus / Plus
Query: 30 tggtactcggagagatagtagaccgtatagcgtacgctttatctgtgacgtatgtaacac 89
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 tggtacttggagagatagtagaccgtatagcgtacgctttatctgtgacgtatgtaacac 60
Query: 90 ggtccactaaccctcagtatca 111
||||||||||||||||||||||
Sbjct: 61 ggtccactaaccctcagtatca 82
>32062_mmu-mir-411:mirbase
Length = 82
Score = 155 bits (78), Expect = 9e-39
Identities = 81/82 (98%)
Strand = Plus / Plus
Query: 30 tggtactcggagagatagtagaccgtatagcgtacgctttatctgtgacgtatgtaacac 89
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 tggtacttggagagatagtagaccgtatagcgtacgctttatctgtgacgtatgtaacac 60
Query: 90 ggtccactaaccctcagtatca 111
||||||||||||||||||||||
Sbjct: 61 ggtccactaaccctcagtatca 82
>33364_bta-mir-411:mirbase
Length = 82
Score = 155 bits (78), Expect = 9e-39
Identities = 81/82 (98%)
Strand = Plus / Plus
Query: 30 tggtactcggagagatagtagaccgtatagcgtacgctttatctgtgacgtatgtaacac 89
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 tggtacttggagagatagtagaccgtatagcgtacgctttatctgtgacgtatgtaacac 60
Query: 90 ggtccactaaccctcagtatca 111
||||||||||||||||||||||
Sbjct: 61 ggtccactaaccctcagtatca 82
>32905_rno-mir-411:mirbase
Length = 76
Score = 145 bits (73), Expect = 9e-36
Identities = 73/73 (100%)
Strand = Plus / Plus
Query: 38 ggagagatagtagaccgtatagcgtacgctttatctgtgacgtatgtaacacggtccact 97
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4 ggagagatagtagaccgtatagcgtacgctttatctgtgacgtatgtaacacggtccact 63
Query: 98 aaccctcagtatc 110
|||||||||||||
Sbjct: 64 aaccctcagtatc 76
>34087_ssc-mir-411:mirbase
Length = 76
Score = 145 bits (73), Expect = 9e-36
Identities = 73/73 (100%)
Strand = Plus / Plus
Query: 38 ggagagatagtagaccgtatagcgtacgctttatctgtgacgtatgtaacacggtccact 97
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4 ggagagatagtagaccgtatagcgtacgctttatctgtgacgtatgtaacacggtccact 63
Query: 98 aaccctcagtatc 110
|||||||||||||
Sbjct: 64 aaccctcagtatc 76
>26838_cfa-mir-411:mirbase
Length = 58
Score = 115 bits (58), Expect = 8e-27
Identities = 58/58 (100%)
Strand = Plus / Plus
Query: 44 atagtagaccgtatagcgtacgctttatctgtgacgtatgtaacacggtccactaacc 101
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 atagtagaccgtatagcgtacgctttatctgtgacgtatgtaacacggtccactaacc 58
>33828_oar-mir-379:mirbase
Length = 126
Score = 73.8 bits (37), Expect = 3e-14
Identities = 46/49 (93%)
Strand = Plus / Plus
Query: 75 tgacgtatgtaacacggtccactaaccctcagtatcaaatccgtcctcg 123
|||| ||||||||||||||||||||| ||||||||| ||||||||||||
Sbjct: 76 tgacctatgtaacacggtccactaactctcagtatccaatccgtcctcg 124
>33829_oar-mir-379:mirbase
Length = 126
Score = 73.8 bits (37), Expect = 3e-14
Identities = 46/49 (93%)
Strand = Plus / Plus
Query: 75 tgacgtatgtaacacggtccactaaccctcagtatcaaatccgtcctcg 123
|||| ||||||||||||||||||||| ||||||||| ||||||||||||
Sbjct: 76 tgacctatgtaacacggtccactaactctcagtatccaatccgtcctcg 124
>33451_bta-mir-758:mirbase
Length = 88
Score = 52.0 bits (26), Expect = 1e-07
Identities = 47/54 (87%)
Strand = Plus / Plus
Query: 63 acgctttatctgtgacgtatgtaacacggtccactaaccctcagtatcaaatcc 116
||||||||| |||| ||| ||| || ||||||||||||||||||||| |||||
Sbjct: 35 acgctttatttgtgccgtttgtgacctggtccactaaccctcagtatctaatcc 88
>26903_cfa-mir-758:mirbase
Length = 81
Score = 48.1 bits (24), Expect = 2e-06
Identities = 42/48 (87%)
Strand = Plus / Plus
Query: 63 acgctttatctgtgacgtatgtaacacggtccactaaccctcagtatc 110
||||||||| |||| ||| ||| || |||||||||||||||||||||
Sbjct: 33 acgctttatttgtgccgtttgtgacctggtccactaaccctcagtatc 80
>27261_eca-mir-758:mirbase
Length = 85
Score = 48.1 bits (24), Expect = 2e-06
Identities = 42/48 (87%)
Strand = Plus / Plus
Query: 63 acgctttatctgtgacgtatgtaacacggtccactaaccctcagtatc 110
||||||||| |||| ||| ||| || |||||||||||||||||||||
Sbjct: 35 acgctttatttgtgccgtttgtgacctggtccactaaccctcagtatc 82
>28997_hsa-mir-758:mirbase
Length = 88
Score = 48.1 bits (24), Expect = 2e-06
Identities = 42/48 (87%)
Strand = Plus / Plus
Query: 63 acgctttatctgtgacgtatgtaacacggtccactaaccctcagtatc 110
||||||||| |||| ||| ||| || |||||||||||||||||||||
Sbjct: 35 acgctttatttgtgccgtttgtgacctggtccactaaccctcagtatc 82
>30594_ptr-mir-758:mirbase
Length = 87
Score = 48.1 bits (24), Expect = 2e-06
Identities = 42/48 (87%)
Strand = Plus / Plus
Query: 63 acgctttatctgtgacgtatgtaacacggtccactaaccctcagtatc 110
||||||||| |||| ||| ||| || |||||||||||||||||||||
Sbjct: 34 acgctttatttgtgccgtttgtgacctggtccactaaccctcagtatc 81
>31240_ppy-mir-758:mirbase
Length = 88
Score = 48.1 bits (24), Expect = 2e-06
Identities = 42/48 (87%)
Strand = Plus / Plus
Query: 63 acgctttatctgtgacgtatgtaacacggtccactaaccctcagtatc 110
||||||||| |||| ||| ||| || |||||||||||||||||||||
Sbjct: 35 acgctttatttgtgccgtttgtgacctggtccactaaccctcagtatc 82
>32895_rno-mir-379:mirbase
Length = 85
Score = 48.1 bits (24), Expect = 2e-06
Identities = 33/36 (91%)
Strand = Plus / Plus
Query: 75 tgacgtatgtaacacggtccactaaccctcagtatc 110
|||| ||||||||| ||||||||||| |||||||||
Sbjct: 48 tgacctatgtaacatggtccactaactctcagtatc 83
>33355_bta-mir-379:mirbase
Length = 86
Score = 48.1 bits (24), Expect = 2e-06
Identities = 33/36 (91%)
Strand = Plus / Plus
Query: 75 tgacgtatgtaacacggtccactaaccctcagtatc 110
|||| ||||||||| ||||||||||| |||||||||
Sbjct: 49 tgacctatgtaacatggtccactaactctcagtatc 84
>33880_oar-mir-758:mirbase
Length = 101
Score = 46.1 bits (23), Expect = 6e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 90 ggtccactaaccctcagtatcaaatcc 116
||||||||||||||||||||| |||||
Sbjct: 68 ggtccactaaccctcagtatctaatcc 94
>33881_oar-mir-758:mirbase
Length = 101
Score = 46.1 bits (23), Expect = 6e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 90 ggtccactaaccctcagtatcaaatcc 116
||||||||||||||||||||| |||||
Sbjct: 68 ggtccactaaccctcagtatctaatcc 94
>32346_mmu-mir-758:mirbase
Length = 81
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 90 ggtccactaaccctcagtatc 110
|||||||||||||||||||||
Sbjct: 59 ggtccactaaccctcagtatc 79
>32990_rno-mir-758:mirbase
Length = 78
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 90 ggtccactaaccctcagtatc 110
|||||||||||||||||||||
Sbjct: 57 ggtccactaaccctcagtatc 77
>33842_oar-mir-411b:mirbase
Length = 102
Score = 42.1 bits (21), Expect = 1e-04
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 75 tgacgtatgtaacacggtccactaa 99
|||||||||||||| ||||||||||
Sbjct: 54 tgacgtatgtaacatggtccactaa 78
>33843_oar-mir-411b:mirbase
Length = 102
Score = 42.1 bits (21), Expect = 1e-04
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 75 tgacgtatgtaacacggtccactaa 99
|||||||||||||| ||||||||||
Sbjct: 54 tgacgtatgtaacatggtccactaa 78
>34134_ssc-mir-758:mirbase
Length = 76
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 90 ggtccactaaccctcagtatc 110
|||||||||||||||||||||
Sbjct: 56 ggtccactaaccctcagtatc 76
>28113_mml-mir-758:mirbase
Length = 88
Score = 40.1 bits (20), Expect = 4e-04
Identities = 41/48 (85%)
Strand = Plus / Plus
Query: 63 acgctttatctgtgacgtatgtaacacggtccactaaccctcagtatc 110
||||||||| |||| ||| ||| || ||||||||| |||||||||||
Sbjct: 35 acgctttatatgtgccgtttgtgacctggtccactacccctcagtatc 82
