miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>33843_oar-mir-411b:mirbase
Length = 102
Score = 202 bits (102), Expect = 4e-53
Identities = 102/102 (100%)
Strand = Plus / Plus
Query: 1 ccatttcgctgtatgtggagagatggtcgaccataaaacgtacgtgtgctttatgacgta 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 ccatttcgctgtatgtggagagatggtcgaccataaaacgtacgtgtgctttatgacgta 60
Query: 61 tgtaacatggtccactaattctcagcatcagtcagcctgagg 102
||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 tgtaacatggtccactaattctcagcatcagtcagcctgagg 102
>33355_bta-mir-379:mirbase
Length = 86
Score = 50.1 bits (25), Expect = 3e-07
Identities = 37/41 (90%)
Strand = Plus / Plus
Query: 45 tgtgctttatgacgtatgtaacatggtccactaattctcag 85
|||| ||| |||| |||||||||||||||||||| ||||||
Sbjct: 40 tgtgatttttgacctatgtaacatggtccactaactctcag 80
>32895_rno-mir-379:mirbase
Length = 85
Score = 48.1 bits (24), Expect = 1e-06
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 54 tgacgtatgtaacatggtccactaattctcag 85
|||| |||||||||||||||||||| ||||||
Sbjct: 48 tgacctatgtaacatggtccactaactctcag 79
>26830_cfa-mir-379:mirbase
Length = 59
Score = 44.1 bits (22), Expect = 2e-05
Identities = 31/34 (91%)
Strand = Plus / Plus
Query: 45 tgtgctttatgacgtatgtaacatggtccactaa 78
|||| ||| |||| ||||||||||||||||||||
Sbjct: 25 tgtgatttttgacctatgtaacatggtccactaa 58
>26838_cfa-mir-411:mirbase
Length = 58
Score = 42.1 bits (21), Expect = 8e-05
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 54 tgacgtatgtaacatggtccactaa 78
|||||||||||||| ||||||||||
Sbjct: 32 tgacgtatgtaacacggtccactaa 56
>27161_eca-mir-379:mirbase
Length = 67
Score = 42.1 bits (21), Expect = 8e-05
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 54 tgacgtatgtaacatggtccactaa 78
|||| ||||||||||||||||||||
Sbjct: 39 tgacctatgtaacatggtccactaa 63
>27170_eca-mir-411:mirbase
Length = 82
Score = 42.1 bits (21), Expect = 8e-05
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 54 tgacgtatgtaacatggtccactaa 78
|||||||||||||| ||||||||||
Sbjct: 46 tgacgtatgtaacacggtccactaa 70
>27885_mml-mir-379:mirbase
Length = 67
Score = 42.1 bits (21), Expect = 8e-05
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 54 tgacgtatgtaacatggtccactaa 78
|||| ||||||||||||||||||||
Sbjct: 39 tgacctatgtaacatggtccactaa 63
>27894_mml-mir-411:mirbase
Length = 82
Score = 42.1 bits (21), Expect = 8e-05
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 54 tgacgtatgtaacatggtccactaa 78
|||||||||||||| ||||||||||
Sbjct: 46 tgacgtatgtaacacggtccactaa 70
>28632_hsa-mir-379:mirbase
Length = 67
Score = 42.1 bits (21), Expect = 8e-05
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 54 tgacgtatgtaacatggtccactaa 78
|||| ||||||||||||||||||||
Sbjct: 39 tgacctatgtaacatggtccactaa 63
>28641_hsa-mir-411:mirbase
Length = 96
Score = 42.1 bits (21), Expect = 8e-05
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 54 tgacgtatgtaacatggtccactaa 78
|||||||||||||| ||||||||||
Sbjct: 46 tgacgtatgtaacacggtccactaa 70
>30359_ptr-mir-379:mirbase
Length = 66
Score = 42.1 bits (21), Expect = 8e-05
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 54 tgacgtatgtaacatggtccactaa 78
|||| ||||||||||||||||||||
Sbjct: 38 tgacctatgtaacatggtccactaa 62
>30366_ptr-mir-411:mirbase
Length = 95
Score = 42.1 bits (21), Expect = 8e-05
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 54 tgacgtatgtaacatggtccactaa 78
|||||||||||||| ||||||||||
Sbjct: 45 tgacgtatgtaacacggtccactaa 69
>30986_ppy-mir-379:mirbase
Length = 67
Score = 42.1 bits (21), Expect = 8e-05
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 54 tgacgtatgtaacatggtccactaa 78
|||| ||||||||||||||||||||
Sbjct: 39 tgacctatgtaacatggtccactaa 63
>30995_ppy-mir-411:mirbase
Length = 96
Score = 42.1 bits (21), Expect = 8e-05
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 54 tgacgtatgtaacatggtccactaa 78
|||||||||||||| ||||||||||
Sbjct: 46 tgacgtatgtaacacggtccactaa 70
>32051_mmu-mir-379:mirbase
Length = 66
Score = 42.1 bits (21), Expect = 8e-05
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 54 tgacgtatgtaacatggtccactaa 78
|||| ||||||||||||||||||||
Sbjct: 38 tgacctatgtaacatggtccactaa 62
>32062_mmu-mir-411:mirbase
Length = 82
Score = 42.1 bits (21), Expect = 8e-05
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 54 tgacgtatgtaacatggtccactaa 78
|||||||||||||| ||||||||||
Sbjct: 46 tgacgtatgtaacacggtccactaa 70
>32905_rno-mir-411:mirbase
Length = 76
Score = 42.1 bits (21), Expect = 8e-05
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 54 tgacgtatgtaacatggtccactaa 78
|||||||||||||| ||||||||||
Sbjct: 41 tgacgtatgtaacacggtccactaa 65
>33364_bta-mir-411:mirbase
Length = 82
Score = 42.1 bits (21), Expect = 8e-05
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 54 tgacgtatgtaacatggtccactaa 78
|||||||||||||| ||||||||||
Sbjct: 46 tgacgtatgtaacacggtccactaa 70
>33840_oar-mir-411a:mirbase
Length = 125
Score = 42.1 bits (21), Expect = 8e-05
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 54 tgacgtatgtaacatggtccactaa 78
|||||||||||||| ||||||||||
Sbjct: 75 tgacgtatgtaacacggtccactaa 99
>33841_oar-mir-411a:mirbase
Length = 125
Score = 42.1 bits (21), Expect = 8e-05
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 54 tgacgtatgtaacatggtccactaa 78
|||||||||||||| ||||||||||
Sbjct: 75 tgacgtatgtaacacggtccactaa 99
>34087_ssc-mir-411:mirbase
Length = 76
Score = 42.1 bits (21), Expect = 8e-05
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 54 tgacgtatgtaacatggtccactaa 78
|||||||||||||| ||||||||||
Sbjct: 41 tgacgtatgtaacacggtccactaa 65
