miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>33844_oar-mir-412:mirbase
Length = 124
Score = 246 bits (124), Expect = 3e-66
Identities = 124/124 (100%)
Strand = Plus / Plus
Query: 1 agggaagaacgtcagtaccagcaaccactctggggtacaggacggatggtcgaccagttg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 agggaagaacgtcagtaccagcaaccactctggggtacaggacggatggtcgaccagttg 60
Query: 61 gaaagtaattgtttctaatgtacttcacctgggccactagctgtccgtacccactgcagc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 gaaagtaattgtttctaatgtacttcacctgggccactagctgtccgtacccactgcagc 120
Query: 121 ctgc 124
||||
Sbjct: 121 ctgc 124
>33365_bta-mir-412:mirbase
Length = 90
Score = 170 bits (86), Expect = 2e-43
Identities = 89/90 (98%)
Strand = Plus / Plus
Query: 30 ctggggtacaggacggatggtcgaccagttggaaagtaattgtttctaatgtacttcacc 89
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 ctggggtacaggacggatggtcgaccagttggaaagtaattgtttctaatgtacttcacc 60
Query: 90 tgggccactagctgtccgtacccactgcag 119
||| ||||||||||||||||||||||||||
Sbjct: 61 tggtccactagctgtccgtacccactgcag 90
>27171_eca-mir-412:mirbase
Length = 80
Score = 135 bits (68), Expect = 9e-33
Identities = 77/80 (96%)
Strand = Plus / Plus
Query: 33 gggtacaggacggatggtcgaccagttggaaagtaattgtttctaatgtacttcacctgg 92
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 gggtacaggagggatggtcgaccagttggaaagtaattgtttctaatgtacttcacctgg 60
Query: 93 gccactagctgtccgtaccc 112
|||||||| ||||||||||
Sbjct: 61 tccactagccgtccgtaccc 80
>27895_mml-mir-412:mirbase
Length = 91
Score = 119 bits (60), Expect = 5e-28
Identities = 72/76 (94%)
Strand = Plus / Plus
Query: 44 ggatggtcgaccagttggaaagtaattgtttctaatgtacttcacctgggccactagctg 103
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
Sbjct: 16 ggatggtcgaccagttggaaagtaattgtttctaatgtacttcacctggtccactagccg 75
Query: 104 tccgtacccactgcag 119
|||||| || ||||||
Sbjct: 76 tccgtatccgctgcag 91
>28642_hsa-mir-412:mirbase
Length = 91
Score = 119 bits (60), Expect = 5e-28
Identities = 72/76 (94%)
Strand = Plus / Plus
Query: 44 ggatggtcgaccagttggaaagtaattgtttctaatgtacttcacctgggccactagctg 103
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
Sbjct: 16 ggatggtcgaccagttggaaagtaattgtttctaatgtacttcacctggtccactagccg 75
Query: 104 tccgtacccactgcag 119
|||||| || ||||||
Sbjct: 76 tccgtatccgctgcag 91
>30367_ptr-mir-412:mirbase
Length = 90
Score = 119 bits (60), Expect = 5e-28
Identities = 72/76 (94%)
Strand = Plus / Plus
Query: 44 ggatggtcgaccagttggaaagtaattgtttctaatgtacttcacctgggccactagctg 103
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
Sbjct: 15 ggatggtcgaccagttggaaagtaattgtttctaatgtacttcacctggtccactagccg 74
Query: 104 tccgtacccactgcag 119
|||||| || ||||||
Sbjct: 75 tccgtatccgctgcag 90
>30996_ppy-mir-412:mirbase
Length = 91
Score = 119 bits (60), Expect = 5e-28
Identities = 72/76 (94%)
Strand = Plus / Plus
Query: 44 ggatggtcgaccagttggaaagtaattgtttctaatgtacttcacctgggccactagctg 103
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
Sbjct: 16 ggatggtcgaccagttggaaagtaattgtttctaatgtacttcacctggtccactagccg 75
Query: 104 tccgtacccactgcag 119
|||||| || ||||||
Sbjct: 76 tccgtatccgctgcag 91
>32063_mmu-mir-412:mirbase
Length = 80
Score = 107 bits (54), Expect = 2e-24
Identities = 60/62 (96%)
Strand = Plus / Plus
Query: 40 ggacggatggtcgaccagttggaaagtaattgtttctaatgtacttcacctgggccacta 99
|||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||
Sbjct: 8 ggacggatggtcgaccagctggaaagtaattgtttctaatgtacttcacctggtccacta 67
Query: 100 gc 101
||
Sbjct: 68 gc 69
>32064_mmu-mir-412:mirbase
Length = 80
Score = 107 bits (54), Expect = 2e-24
Identities = 60/62 (96%)
Strand = Plus / Plus
Query: 40 ggacggatggtcgaccagttggaaagtaattgtttctaatgtacttcacctgggccacta 99
|||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||
Sbjct: 8 ggacggatggtcgaccagctggaaagtaattgtttctaatgtacttcacctggtccacta 67
Query: 100 gc 101
||
Sbjct: 68 gc 69
>32906_rno-mir-412:mirbase
Length = 70
Score = 107 bits (54), Expect = 2e-24
Identities = 60/62 (96%)
Strand = Plus / Plus
Query: 40 ggacggatggtcgaccagttggaaagtaattgtttctaatgtacttcacctgggccacta 99
|||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||
Sbjct: 2 ggacggatggtcgaccagctggaaagtaattgtttctaatgtacttcacctggtccacta 61
Query: 100 gc 101
||
Sbjct: 62 gc 63
