miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>33849_oar-mir-433:mirbase
Length = 114
Score = 226 bits (114), Expect = 3e-60
Identities = 114/114 (100%)
Strand = Plus / Plus
Query: 1 acccagtggccggggagaagtacggtgagcctgtcattgttcagagaggctagatcctcc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 acccagtggccggggagaagtacggtgagcctgtcattgttcagagaggctagatcctcc 60
Query: 61 ttgttgagaaggatcatgatgggctcctcggtgttctccaggtagcggcaccac 114
||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 ttgttgagaaggatcatgatgggctcctcggtgttctccaggtagcggcaccac 114
>33375_bta-mir-433:mirbase
Length = 124
Score = 214 bits (108), Expect = 1e-56
Identities = 108/108 (100%)
Strand = Plus / Plus
Query: 7 tggccggggagaagtacggtgagcctgtcattgttcagagaggctagatcctccttgttg 66
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 tggccggggagaagtacggtgagcctgtcattgttcagagaggctagatcctccttgttg 60
Query: 67 agaaggatcatgatgggctcctcggtgttctccaggtagcggcaccac 114
||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 agaaggatcatgatgggctcctcggtgttctccaggtagcggcaccac 108
>32072_mmu-mir-433:mirbase
Length = 124
Score = 184 bits (93), Expect = 9e-48
Identities = 102/105 (97%)
Strand = Plus / Plus
Query: 10 ccggggagaagtacggtgagcctgtcattgttcagagaggctagatcctccttgttgaga 69
||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||
Sbjct: 4 ccggggagaagtacggtgagcctgtcattattcagagaggctagatcctctgtgttgaga 63
Query: 70 aggatcatgatgggctcctcggtgttctccaggtagcggcaccac 114
|||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 64 aggatcatgatgggctcctcggtgttctccaggtagcggcaccac 108
>27179_eca-mir-433:mirbase
Length = 124
Score = 176 bits (89), Expect = 2e-45
Identities = 101/105 (96%)
Strand = Plus / Plus
Query: 10 ccggggagaagtacggtgagcctgtcattgttcagagaggctagatcctccttgttgaga 69
||||||||||||||||||||||||||||| |||||||||||||||||||| |||| |||
Sbjct: 4 ccggggagaagtacggtgagcctgtcattattcagagaggctagatcctctgtgttaaga 63
Query: 70 aggatcatgatgggctcctcggtgttctccaggtagcggcaccac 114
|||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 64 aggatcatgatgggctcctcggtgttctccaggtagcggcaccac 108
>28652_hsa-mir-433:mirbase
Length = 93
Score = 161 bits (81), Expect = 1e-40
Identities = 90/93 (96%)
Strand = Plus / Plus
Query: 10 ccggggagaagtacggtgagcctgtcattgttcagagaggctagatcctccttgttgaga 69
||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||
Sbjct: 1 ccggggagaagtacggtgagcctgtcattattcagagaggctagatcctctgtgttgaga 60
Query: 70 aggatcatgatgggctcctcggtgttctccagg 102
|||||||||||||||||||||||||||||||||
Sbjct: 61 aggatcatgatgggctcctcggtgttctccagg 93
>31006_ppy-mir-433:mirbase
Length = 93
Score = 161 bits (81), Expect = 1e-40
Identities = 90/93 (96%)
Strand = Plus / Plus
Query: 10 ccggggagaagtacggtgagcctgtcattgttcagagaggctagatcctccttgttgaga 69
||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||
Sbjct: 1 ccggggagaagtacggtgagcctgtcattattcagagaggctagatcctctgtgttgaga 60
Query: 70 aggatcatgatgggctcctcggtgttctccagg 102
|||||||||||||||||||||||||||||||||
Sbjct: 61 aggatcatgatgggctcctcggtgttctccagg 93
>32912_rno-mir-433:mirbase
Length = 93
Score = 161 bits (81), Expect = 1e-40
Identities = 90/93 (96%)
Strand = Plus / Plus
Query: 10 ccggggagaagtacggtgagcctgtcattgttcagagaggctagatcctccttgttgaga 69
||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||
Sbjct: 1 ccggggagaagtacggtgagcctgtcattattcagagaggctagatcctctgtgttgaga 60
Query: 70 aggatcatgatgggctcctcggtgttctccagg 102
|||||||||||||||||||||||||||||||||
Sbjct: 61 aggatcatgatgggctcctcggtgttctccagg 93
>30375_ptr-mir-433:mirbase
Length = 92
Score = 159 bits (80), Expect = 5e-40
Identities = 89/92 (96%)
Strand = Plus / Plus
Query: 11 cggggagaagtacggtgagcctgtcattgttcagagaggctagatcctccttgttgagaa 70
|||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||
Sbjct: 1 cggggagaagtacggtgagcctgtcattattcagagaggctagatcctctgtgttgagaa 60
Query: 71 ggatcatgatgggctcctcggtgttctccagg 102
||||||||||||||||||||||||||||||||
Sbjct: 61 ggatcatgatgggctcctcggtgttctccagg 92
>27905_mml-mir-433:mirbase
Length = 93
Score = 155 bits (78), Expect = 8e-39
Identities = 87/90 (96%)
Strand = Plus / Plus
Query: 13 gggagaagtacggtgagcctgtcattgttcagagaggctagatcctccttgttgagaagg 72
|||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||
Sbjct: 4 gggagaagtacggtgagcctgtcattattcagagaggctagatcctctgtgttgagaagg 63
Query: 73 atcatgatgggctcctcggtgttctccagg 102
||||||||||||||||||||||||||||||
Sbjct: 64 atcatgatgggctcctcggtgttctccagg 93
>26845_cfa-mir-433:mirbase
Length = 74
Score = 123 bits (62), Expect = 3e-29
Identities = 71/74 (95%)
Strand = Plus / Plus
Query: 21 tacggtgagcctgtcattgttcagagaggctagatcctccttgttgagaaggatcatgat 80
|||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||
Sbjct: 1 tacggtgagcctgtcattattcagagaggctagatcctctgtgttgagaaggatcatgat 60
Query: 81 gggctcctcggtgt 94
||||||||||||||
Sbjct: 61 gggctcctcggtgt 74
