miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>33853_oar-mir-487a:mirbase
Length = 103
Score = 204 bits (103), Expect = 9e-54
Identities = 103/103 (100%)
Strand = Plus / Plus
Query: 1 gttagcctttggtacttgaagagtggctatccctgctgtgttcgctgtatttatgacgaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 gttagcctttggtacttgaagagtggctatccctgctgtgttcgctgtatttatgacgaa 60
Query: 61 tcatacagggacatccagtttttcagtatcaaatactgctctg 103
|||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 tcatacagggacatccagtttttcagtatcaaatactgctctg 103
>26856_cfa-mir-487a:mirbase
Length = 80
Score = 151 bits (76), Expect = 1e-37
Identities = 79/80 (98%)
Strand = Plus / Plus
Query: 11 ggtacttgaagagtggctatccctgctgtgttcgctgtatttatgacgaatcatacaggg 70
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 ggtacttgaagagtggttatccctgctgtgttcgctgtatttatgacgaatcatacaggg 60
Query: 71 acatccagtttttcagtatc 90
||||||||||||||||||||
Sbjct: 61 acatccagtttttcagtatc 80
>27192_eca-mir-487a:mirbase
Length = 80
Score = 151 bits (76), Expect = 1e-37
Identities = 79/80 (98%)
Strand = Plus / Plus
Query: 11 ggtacttgaagagtggctatccctgctgtgttcgctgtatttatgacgaatcatacaggg 70
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 ggtacttgaagagtggttatccctgctgtgttcgctgtatttatgacgaatcatacaggg 60
Query: 71 acatccagtttttcagtatc 90
||||||||||||||||||||
Sbjct: 61 acatccagtttttcagtatc 80
>33392_bta-mir-487a:mirbase
Length = 80
Score = 151 bits (76), Expect = 1e-37
Identities = 79/80 (98%)
Strand = Plus / Plus
Query: 11 ggtacttgaagagtggctatccctgctgtgttcgctgtatttatgacgaatcatacaggg 70
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 ggtacttgaagagtggttatccctgctgtgttcgctgtatttatgacgaatcatacaggg 60
Query: 71 acatccagtttttcagtatc 90
||||||||||||||||||||
Sbjct: 61 acatccagtttttcagtatc 80
>30390_ptr-mir-487a:mirbase
Length = 79
Score = 141 bits (71), Expect = 1e-34
Identities = 77/79 (97%)
Strand = Plus / Plus
Query: 12 gtacttgaagagtggctatccctgctgtgttcgctgtatttatgacgaatcatacaggga 71
||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 1 gtacttgaagagtggttatccctgctgtgttcgctgaatttatgacgaatcatacaggga 60
Query: 72 catccagtttttcagtatc 90
|||||||||||||||||||
Sbjct: 61 catccagtttttcagtatc 79
>28675_hsa-mir-487a:mirbase
Length = 80
Score = 135 bits (68), Expect = 7e-33
Identities = 77/80 (96%)
Strand = Plus / Plus
Query: 11 ggtacttgaagagtggctatccctgctgtgttcgctgtatttatgacgaatcatacaggg 70
|||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 1 ggtacttgaagagtggttatccctgctgtgttcgcttaatttatgacgaatcatacaggg 60
Query: 71 acatccagtttttcagtatc 90
||||||||||||||||||||
Sbjct: 61 acatccagtttttcagtatc 80
>31023_ppy-mir-487a:mirbase
Length = 80
Score = 135 bits (68), Expect = 7e-33
Identities = 77/80 (96%)
Strand = Plus / Plus
Query: 11 ggtacttgaagagtggctatccctgctgtgttcgctgtatttatgacgaatcatacaggg 70
|||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 1 ggtacttgaagagtggttatccctgctgtgttcgcttaatttatgacgaatcatacaggg 60
Query: 71 acatccagtttttcagtatc 90
||||||||||||||||||||
Sbjct: 61 acatccagtttttcagtatc 80
>27924_mml-mir-487a:mirbase
Length = 80
Score = 119 bits (60), Expect = 4e-28
Identities = 75/80 (93%)
Strand = Plus / Plus
Query: 11 ggtacttgaagagtggctatccctgctgtgttcgctgtatttatgacgaatcatacaggg 70
|||||||| ||||||| |||||||||||||||||| | |||||||||||||||||||||
Sbjct: 1 ggtacttggagagtggtcatccctgctgtgttcgctttgtttatgacgaatcatacaggg 60
Query: 71 acatccagtttttcagtatc 90
||||||||||||||||||||
Sbjct: 61 acatccagtttttcagtatc 80
>27193_eca-mir-487b:mirbase
Length = 84
Score = 63.9 bits (32), Expect = 2e-11
Identities = 71/84 (84%)
Strand = Plus / Plus
Query: 9 ttggtacttgaagagtggctatccctgctgtgttcgctgtatttatgacgaatcatacag 68
|||||||||| ||||||| |||||||| |||||| | || ||| | |||||| |||||
Sbjct: 1 ttggtacttggagagtggttatccctgtcctgttcgttttaattacgtcgaatcgtacag 60
Query: 69 ggacatccagtttttcagtatcaa 92
|| |||||| ||||||||||||||
Sbjct: 61 ggtcatccactttttcagtatcaa 84
>33393_bta-mir-487b:mirbase
Length = 84
Score = 63.9 bits (32), Expect = 2e-11
Identities = 71/84 (84%)
Strand = Plus / Plus
Query: 9 ttggtacttgaagagtggctatccctgctgtgttcgctgtatttatgacgaatcatacag 68
|||||||||| ||||||| |||||||| |||||| | || | ||| |||||| |||||
Sbjct: 1 ttggtacttggagagtggttatccctgtcctgttcgttttactcatgtcgaatcgtacag 60
Query: 69 ggacatccagtttttcagtatcaa 92
|| |||||| ||||||||||||||
Sbjct: 61 ggtcatccactttttcagtatcaa 84
>32931_rno-mir-487b:mirbase
Length = 82
Score = 60.0 bits (30), Expect = 3e-10
Identities = 69/82 (84%)
Strand = Plus / Plus
Query: 10 tggtacttgaagagtggctatccctgctgtgttcgctgtatttatgacgaatcatacagg 69
||||||||| ||||||| |||||||| | |||||| | ||||| |||||| ||||||
Sbjct: 1 tggtacttggagagtggttatccctgtcctcttcgcttcacttatgccgaatcgtacagg 60
Query: 70 gacatccagtttttcagtatca 91
| |||||| |||||||||||||
Sbjct: 61 gtcatccactttttcagtatca 82
>28676_hsa-mir-487b:mirbase
Length = 84
Score = 56.0 bits (28), Expect = 5e-09
Identities = 70/84 (83%)
Strand = Plus / Plus
Query: 9 ttggtacttgaagagtggctatccctgctgtgttcgctgtatttatgacgaatcatacag 68
|||||||||| ||||||| |||||||| |||||| | | | ||| |||||| |||||
Sbjct: 1 ttggtacttggagagtggttatccctgtcctgttcgttttgctcatgtcgaatcgtacag 60
Query: 69 ggacatccagtttttcagtatcaa 92
|| |||||| ||||||||||||||
Sbjct: 61 ggtcatccactttttcagtatcaa 84
>31024_ppy-mir-487b:mirbase
Length = 84
Score = 56.0 bits (28), Expect = 5e-09
Identities = 70/84 (83%)
Strand = Plus / Plus
Query: 9 ttggtacttgaagagtggctatccctgctgtgttcgctgtatttatgacgaatcatacag 68
|||||||||| ||||||| |||||||| |||||| | | | ||| |||||| |||||
Sbjct: 1 ttggtacttggagagtggttatccctgtcctgttcgttttgctcatgtcgaatcgtacag 60
Query: 69 ggacatccagtttttcagtatcaa 92
|| |||||| ||||||||||||||
Sbjct: 61 ggtcatccactttttcagtatcaa 84
>30391_ptr-mir-487b:mirbase
Length = 83
Score = 54.0 bits (27), Expect = 2e-08
Identities = 69/83 (83%)
Strand = Plus / Plus
Query: 10 tggtacttgaagagtggctatccctgctgtgttcgctgtatttatgacgaatcatacagg 69
||||||||| ||||||| |||||||| |||||| | | | ||| |||||| ||||||
Sbjct: 1 tggtacttggagagtggttatccctgtcctgttcgttttgctcatgtcgaatcgtacagg 60
Query: 70 gacatccagtttttcagtatcaa 92
| |||||| ||||||||||||||
Sbjct: 61 gtcatccactttttcagtatcaa 83
>33854_oar-mir-487b:mirbase
Length = 106
Score = 54.0 bits (27), Expect = 2e-08
Identities = 73/87 (83%), Gaps = 1/87 (1%)
Strand = Plus / Plus
Query: 6 cctttggtacttgaagagtggctatccctgctgtgttcgctgtatttatgacgaatcata 65
||||||||||||| ||||||| |||||||| |||||| | || | ||| |||||| ||
Sbjct: 7 cctttggtacttggagagtggttatccctgtcctgttcgttttactcatgtcgaatcgta 66
Query: 66 cagggacatccagtttttcagtatcaa 92
||||| |||||| |||||||||||||
Sbjct: 67 cagggtcatcca-cttttcagtatcaa 92
>33855_oar-mir-487b:mirbase
Length = 106
Score = 54.0 bits (27), Expect = 2e-08
Identities = 73/87 (83%), Gaps = 1/87 (1%)
Strand = Plus / Plus
Query: 6 cctttggtacttgaagagtggctatccctgctgtgttcgctgtatttatgacgaatcata 65
||||||||||||| ||||||| |||||||| |||||| | || | ||| |||||| ||
Sbjct: 7 cctttggtacttggagagtggttatccctgtcctgttcgttttactcatgtcgaatcgta 66
Query: 66 cagggacatccagtttttcagtatcaa 92
||||| |||||| |||||||||||||
Sbjct: 67 cagggtcatcca-cttttcagtatcaa 92
>27225_eca-mir-539:mirbase
Length = 78
Score = 52.0 bits (26), Expect = 8e-08
Identities = 41/46 (89%)
Strand = Plus / Plus
Query: 28 tatccctgctgtgttcgctgtatttatgacgaatcatacagggaca 73
||||| ||||||||||||| ||||| ||| |||||||||| |||||
Sbjct: 17 tatccttgctgtgttcgctttatttgtgatgaatcatacaaggaca 62
>32176_mmu-mir-487b:mirbase
Length = 82
Score = 52.0 bits (26), Expect = 8e-08
Identities = 68/82 (82%)
Strand = Plus / Plus
Query: 10 tggtacttgaagagtggctatccctgctgtgttcgctgtatttatgacgaatcatacagg 69
||||||||| ||||||| |||||||| | |||||| | | ||| |||||| ||||||
Sbjct: 1 tggtacttggagagtggttatccctgtcctcttcgcttcactcatgccgaatcgtacagg 60
Query: 70 gacatccagtttttcagtatca 91
| |||||| |||||||||||||
Sbjct: 61 gtcatccactttttcagtatca 82
>34107_ssc-mir-487b:mirbase
Length = 78
Score = 52.0 bits (26), Expect = 8e-08
Identities = 65/78 (83%)
Strand = Plus / Plus
Query: 13 tacttgaagagtggctatccctgctgtgttcgctgtatttatgacgaatcatacagggac 72
|||||| ||||||| |||||||| |||||| | || | ||| |||||| ||||||| |
Sbjct: 1 tacttggagagtggttatccctgtcctgttcgttttactcatgtcgaatcgtacagggtc 60
Query: 73 atccagtttttcagtatc 90
||||| ||||||||||||
Sbjct: 61 atccactttttcagtatc 78
>27925_mml-mir-487b:mirbase
Length = 84
Score = 48.1 bits (24), Expect = 1e-06
Identities = 33/36 (91%)
Strand = Plus / Plus
Query: 57 cgaatcatacagggacatccagtttttcagtatcaa 92
|||||| ||||||| |||||| ||||||||||||||
Sbjct: 49 cgaatcgtacagggtcatccactttttcagtatcaa 84
>32890_rno-mir-376b:mirbase
Length = 86
Score = 46.1 bits (23), Expect = 5e-06
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 59 aatcatacagggacatccagtttttcagtatcaaa 93
||||||| ||| ||||||| |||||||||||||||
Sbjct: 52 aatcatagaggaacatccactttttcagtatcaaa 86
>32891_rno-mir-376b:mirbase
Length = 86
Score = 46.1 bits (23), Expect = 5e-06
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 59 aatcatacagggacatccagtttttcagtatcaaa 93
||||||| ||| ||||||| |||||||||||||||
Sbjct: 52 aatcatagaggaacatccactttttcagtatcaaa 86
>26875_cfa-mir-539:mirbase
Length = 76
Score = 44.1 bits (22), Expect = 2e-05
Identities = 40/46 (86%)
Strand = Plus / Plus
Query: 28 tatccctgctgtgttcgctgtatttatgacgaatcatacagggaca 73
||||| || |||||||||||| ||| ||| |||||||||| |||||
Sbjct: 16 tatccttggtgtgttcgctgtgtttgtgaggaatcatacaaggaca 61
>28312_ggo-mir-154:mirbase
Length = 84
Score = 44.1 bits (22), Expect = 2e-05
Identities = 49/58 (84%)
Strand = Plus / Plus
Query: 10 tggtacttgaagagtggctatccctgctgtgttcgctgtatttatgacgaatcataca 67
||||||||||||| || ||||| || || |||||| ||||| ||||||||||||||
Sbjct: 2 tggtacttgaagataggttatccgtgttgccttcgctttatttgtgacgaatcataca 59
>28481_hsa-mir-154:mirbase
Length = 84
Score = 44.1 bits (22), Expect = 2e-05
Identities = 49/58 (84%)
Strand = Plus / Plus
Query: 10 tggtacttgaagagtggctatccctgctgtgttcgctgtatttatgacgaatcataca 67
||||||||||||| || ||||| || || |||||| ||||| ||||||||||||||
Sbjct: 2 tggtacttgaagataggttatccgtgttgccttcgctttatttgtgacgaatcataca 59
>30101_ppa-mir-154:mirbase
Length = 84
Score = 44.1 bits (22), Expect = 2e-05
Identities = 49/58 (84%)
Strand = Plus / Plus
Query: 10 tggtacttgaagagtggctatccctgctgtgttcgctgtatttatgacgaatcataca 67
||||||||||||| || ||||| || || |||||| ||||| ||||||||||||||
Sbjct: 2 tggtacttgaagataggttatccgtgttgccttcgctttatttgtgacgaatcataca 59
>30249_ptr-mir-154:mirbase
Length = 84
Score = 44.1 bits (22), Expect = 2e-05
Identities = 49/58 (84%)
Strand = Plus / Plus
Query: 10 tggtacttgaagagtggctatccctgctgtgttcgctgtatttatgacgaatcataca 67
||||||||||||| || ||||| || || |||||| ||||| ||||||||||||||
Sbjct: 2 tggtacttgaagataggttatccgtgttgccttcgctttatttgtgacgaatcataca 59
>30863_ppy-mir-154:mirbase
Length = 84
Score = 44.1 bits (22), Expect = 2e-05
Identities = 49/58 (84%)
Strand = Plus / Plus
Query: 10 tggtacttgaagagtggctatccctgctgtgttcgctgtatttatgacgaatcataca 67
||||||||||||| || ||||| || || |||||| ||||| ||||||||||||||
Sbjct: 2 tggtacttgaagataggttatccgtgttgccttcgctttatttgtgacgaatcataca 59
>27765_mml-mir-154:mirbase
Length = 84
Score = 42.1 bits (21), Expect = 8e-05
Identities = 48/57 (84%)
Strand = Plus / Plus
Query: 11 ggtacttgaagagtggctatccctgctgtgttcgctgtatttatgacgaatcataca 67
|||||||||||| || ||||| || || |||||| ||||| ||||||||||||||
Sbjct: 3 ggtacttgaagataggttatccgtgttgccttcgctttatttgtgacgaatcataca 59
>28220_mne-mir-154:mirbase
Length = 84
Score = 42.1 bits (21), Expect = 8e-05
Identities = 48/57 (84%)
Strand = Plus / Plus
Query: 11 ggtacttgaagagtggctatccctgctgtgttcgctgtatttatgacgaatcataca 67
|||||||||||| || ||||| || || |||||| ||||| ||||||||||||||
Sbjct: 3 ggtacttgaagataggttatccgtgttgccttcgctttatttgtgacgaatcataca 59
>32046_mmu-mir-376b:mirbase
Length = 82
Score = 42.1 bits (21), Expect = 8e-05
Identities = 30/33 (90%)
Strand = Plus / Plus
Query: 59 aatcatacagggacatccagtttttcagtatca 91
||||||| ||| ||||||| |||||||||||||
Sbjct: 50 aatcatagaggaacatccactttttcagtatca 82
>33834_oar-mir-382:mirbase
Length = 126
Score = 42.1 bits (21), Expect = 8e-05
Identities = 48/57 (84%)
Strand = Plus / Plus
Query: 41 ttcgctgtatttatgacgaatcatacagggacatccagtttttcagtatcaaatact 97
|||||| || |||||||||||||| || ||||| | |||||||||| ||||||||
Sbjct: 61 ttcgctttacttatgacgaatcattcacggacaacacttttttcagtaccaaatact 117
>33835_oar-mir-382:mirbase
Length = 126
Score = 42.1 bits (21), Expect = 8e-05
Identities = 48/57 (84%)
Strand = Plus / Plus
Query: 41 ttcgctgtatttatgacgaatcatacagggacatccagtttttcagtatcaaatact 97
|||||| || |||||||||||||| || ||||| | |||||||||| ||||||||
Sbjct: 61 ttcgctttacttatgacgaatcattcacggacaacacttttttcagtaccaaatact 117
