miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>33855_oar-mir-487b:mirbase
Length = 106
Score = 210 bits (106), Expect = 2e-55
Identities = 106/106 (100%)
Strand = Plus / Plus
Query: 1 tgctaacctttggtacttggagagtggttatccctgtcctgttcgttttactcatgtcga 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 tgctaacctttggtacttggagagtggttatccctgtcctgttcgttttactcatgtcga 60
Query: 61 atcgtacagggtcatccacttttcagtatcaagagcgcagaccgta 106
||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 atcgtacagggtcatccacttttcagtatcaagagcgcagaccgta 106
>33393_bta-mir-487b:mirbase
Length = 84
Score = 151 bits (76), Expect = 1e-37
Identities = 83/84 (98%), Gaps = 1/84 (1%)
Strand = Plus / Plus
Query: 10 ttggtacttggagagtggttatccctgtcctgttcgttttactcatgtcgaatcgtacag 69
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 ttggtacttggagagtggttatccctgtcctgttcgttttactcatgtcgaatcgtacag 60
Query: 70 ggtcatccac-ttttcagtatcaa 92
|||||||||| |||||||||||||
Sbjct: 61 ggtcatccactttttcagtatcaa 84
>28676_hsa-mir-487b:mirbase
Length = 84
Score = 143 bits (72), Expect = 3e-35
Identities = 82/84 (97%), Gaps = 1/84 (1%)
Strand = Plus / Plus
Query: 10 ttggtacttggagagtggttatccctgtcctgttcgttttactcatgtcgaatcgtacag 69
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 1 ttggtacttggagagtggttatccctgtcctgttcgttttgctcatgtcgaatcgtacag 60
Query: 70 ggtcatccac-ttttcagtatcaa 92
|||||||||| |||||||||||||
Sbjct: 61 ggtcatccactttttcagtatcaa 84
>31024_ppy-mir-487b:mirbase
Length = 84
Score = 143 bits (72), Expect = 3e-35
Identities = 82/84 (97%), Gaps = 1/84 (1%)
Strand = Plus / Plus
Query: 10 ttggtacttggagagtggttatccctgtcctgttcgttttactcatgtcgaatcgtacag 69
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 1 ttggtacttggagagtggttatccctgtcctgttcgttttgctcatgtcgaatcgtacag 60
Query: 70 ggtcatccac-ttttcagtatcaa 92
|||||||||| |||||||||||||
Sbjct: 61 ggtcatccactttttcagtatcaa 84
>30391_ptr-mir-487b:mirbase
Length = 83
Score = 141 bits (71), Expect = 1e-34
Identities = 81/83 (97%), Gaps = 1/83 (1%)
Strand = Plus / Plus
Query: 11 tggtacttggagagtggttatccctgtcctgttcgttttactcatgtcgaatcgtacagg 70
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 1 tggtacttggagagtggttatccctgtcctgttcgttttgctcatgtcgaatcgtacagg 60
Query: 71 gtcatccac-ttttcagtatcaa 92
||||||||| |||||||||||||
Sbjct: 61 gtcatccactttttcagtatcaa 83
>34107_ssc-mir-487b:mirbase
Length = 78
Score = 139 bits (70), Expect = 5e-34
Identities = 70/70 (100%)
Strand = Plus / Plus
Query: 14 tacttggagagtggttatccctgtcctgttcgttttactcatgtcgaatcgtacagggtc 73
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 tacttggagagtggttatccctgtcctgttcgttttactcatgtcgaatcgtacagggtc 60
Query: 74 atccactttt 83
||||||||||
Sbjct: 61 atccactttt 70
>27925_mml-mir-487b:mirbase
Length = 84
Score = 135 bits (68), Expect = 7e-33
Identities = 81/84 (96%), Gaps = 1/84 (1%)
Strand = Plus / Plus
Query: 10 ttggtacttggagagtggttatccctgtcctgttcgttttactcatgtcgaatcgtacag 69
|||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||
Sbjct: 1 ttggtacttggagagtggttatccctgtcctgttcgttttgctcgtgtcgaatcgtacag 60
Query: 70 ggtcatccac-ttttcagtatcaa 92
|||||||||| |||||||||||||
Sbjct: 61 ggtcatccactttttcagtatcaa 84
>27193_eca-mir-487b:mirbase
Length = 84
Score = 127 bits (64), Expect = 2e-30
Identities = 80/84 (95%), Gaps = 1/84 (1%)
Strand = Plus / Plus
Query: 10 ttggtacttggagagtggttatccctgtcctgttcgttttactcatgtcgaatcgtacag 69
||||||||||||||||||||||||||||||||||||||||| | | ||||||||||||||
Sbjct: 1 ttggtacttggagagtggttatccctgtcctgttcgttttaattacgtcgaatcgtacag 60
Query: 70 ggtcatccac-ttttcagtatcaa 92
|||||||||| |||||||||||||
Sbjct: 61 ggtcatccactttttcagtatcaa 84
>26857_cfa-mir-487b:mirbase
Length = 58
Score = 115 bits (58), Expect = 7e-27
Identities = 58/58 (100%)
Strand = Plus / Plus
Query: 24 gtggttatccctgtcctgttcgttttactcatgtcgaatcgtacagggtcatccactt 81
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 gtggttatccctgtcctgttcgttttactcatgtcgaatcgtacagggtcatccactt 58
>32176_mmu-mir-487b:mirbase
Length = 82
Score = 115 bits (58), Expect = 7e-27
Identities = 77/82 (93%), Gaps = 1/82 (1%)
Strand = Plus / Plus
Query: 11 tggtacttggagagtggttatccctgtcctgttcgttttactcatgtcgaatcgtacagg 70
|||||||||||||||||||||||||||||| |||| || ||||||| |||||||||||||
Sbjct: 1 tggtacttggagagtggttatccctgtcctcttcgcttcactcatgccgaatcgtacagg 60
Query: 71 gtcatccac-ttttcagtatca 91
||||||||| ||||||||||||
Sbjct: 61 gtcatccactttttcagtatca 82
>32931_rno-mir-487b:mirbase
Length = 82
Score = 107 bits (54), Expect = 2e-24
Identities = 76/82 (92%), Gaps = 1/82 (1%)
Strand = Plus / Plus
Query: 11 tggtacttggagagtggttatccctgtcctgttcgttttactcatgtcgaatcgtacagg 70
|||||||||||||||||||||||||||||| |||| || ||| ||| |||||||||||||
Sbjct: 1 tggtacttggagagtggttatccctgtcctcttcgcttcacttatgccgaatcgtacagg 60
Query: 71 gtcatccac-ttttcagtatca 91
||||||||| ||||||||||||
Sbjct: 61 gtcatccactttttcagtatca 82
>33852_oar-mir-487a:mirbase
Length = 103
Score = 54.0 bits (27), Expect = 2e-08
Identities = 73/87 (83%), Gaps = 1/87 (1%)
Strand = Plus / Plus
Query: 7 cctttggtacttggagagtggttatccctgtcctgttcgttttactcatgtcgaatcgta 66
||||||||||||| ||||||| |||||||| |||||| | || | ||| |||||| ||
Sbjct: 6 cctttggtacttgaagagtggctatccctgctgtgttcgctgtatttatgacgaatcata 65
Query: 67 cagggtcatcca-cttttcagtatcaa 92
||||| |||||| |||||||||||||
Sbjct: 66 cagggacatccagtttttcagtatcaa 92
>33853_oar-mir-487a:mirbase
Length = 103
Score = 54.0 bits (27), Expect = 2e-08
Identities = 73/87 (83%), Gaps = 1/87 (1%)
Strand = Plus / Plus
Query: 7 cctttggtacttggagagtggttatccctgtcctgttcgttttactcatgtcgaatcgta 66
||||||||||||| ||||||| |||||||| |||||| | || | ||| |||||| ||
Sbjct: 6 cctttggtacttgaagagtggctatccctgctgtgttcgctgtatttatgacgaatcata 65
Query: 67 cagggtcatcca-cttttcagtatcaa 92
||||| |||||| |||||||||||||
Sbjct: 66 cagggacatccagtttttcagtatcaa 92
>26856_cfa-mir-487a:mirbase
Length = 80
Score = 48.1 bits (24), Expect = 1e-06
Identities = 60/72 (83%)
Strand = Plus / Plus
Query: 12 ggtacttggagagtggttatccctgtcctgttcgttttactcatgtcgaatcgtacaggg 71
|||||||| |||||||||||||||| |||||| | || | ||| |||||| |||||||
Sbjct: 1 ggtacttgaagagtggttatccctgctgtgttcgctgtatttatgacgaatcatacaggg 60
Query: 72 tcatccactttt 83
|||||| ||||
Sbjct: 61 acatccagtttt 72
>27192_eca-mir-487a:mirbase
Length = 80
Score = 48.1 bits (24), Expect = 1e-06
Identities = 60/72 (83%)
Strand = Plus / Plus
Query: 12 ggtacttggagagtggttatccctgtcctgttcgttttactcatgtcgaatcgtacaggg 71
|||||||| |||||||||||||||| |||||| | || | ||| |||||| |||||||
Sbjct: 1 ggtacttgaagagtggttatccctgctgtgttcgctgtatttatgacgaatcatacaggg 60
Query: 72 tcatccactttt 83
|||||| ||||
Sbjct: 61 acatccagtttt 72
>27924_mml-mir-487a:mirbase
Length = 80
Score = 48.1 bits (24), Expect = 1e-06
Identities = 60/72 (83%)
Strand = Plus / Plus
Query: 12 ggtacttggagagtggttatccctgtcctgttcgttttactcatgtcgaatcgtacaggg 71
||||||||||||||||| ||||||| |||||| ||| | ||| |||||| |||||||
Sbjct: 1 ggtacttggagagtggtcatccctgctgtgttcgctttgtttatgacgaatcatacaggg 60
Query: 72 tcatccactttt 83
|||||| ||||
Sbjct: 61 acatccagtttt 72
>28675_hsa-mir-487a:mirbase
Length = 80
Score = 48.1 bits (24), Expect = 1e-06
Identities = 60/72 (83%)
Strand = Plus / Plus
Query: 12 ggtacttggagagtggttatccctgtcctgttcgttttactcatgtcgaatcgtacaggg 71
|||||||| |||||||||||||||| |||||| || | | ||| |||||| |||||||
Sbjct: 1 ggtacttgaagagtggttatccctgctgtgttcgcttaatttatgacgaatcatacaggg 60
Query: 72 tcatccactttt 83
|||||| ||||
Sbjct: 61 acatccagtttt 72
>31023_ppy-mir-487a:mirbase
Length = 80
Score = 48.1 bits (24), Expect = 1e-06
Identities = 60/72 (83%)
Strand = Plus / Plus
Query: 12 ggtacttggagagtggttatccctgtcctgttcgttttactcatgtcgaatcgtacaggg 71
|||||||| |||||||||||||||| |||||| || | | ||| |||||| |||||||
Sbjct: 1 ggtacttgaagagtggttatccctgctgtgttcgcttaatttatgacgaatcatacaggg 60
Query: 72 tcatccactttt 83
|||||| ||||
Sbjct: 61 acatccagtttt 72
>33392_bta-mir-487a:mirbase
Length = 80
Score = 48.1 bits (24), Expect = 1e-06
Identities = 60/72 (83%)
Strand = Plus / Plus
Query: 12 ggtacttggagagtggttatccctgtcctgttcgttttactcatgtcgaatcgtacaggg 71
|||||||| |||||||||||||||| |||||| | || | ||| |||||| |||||||
Sbjct: 1 ggtacttgaagagtggttatccctgctgtgttcgctgtatttatgacgaatcatacaggg 60
Query: 72 tcatccactttt 83
|||||| ||||
Sbjct: 61 acatccagtttt 72
>30390_ptr-mir-487a:mirbase
Length = 79
Score = 40.1 bits (20), Expect = 3e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 13 gtacttggagagtggttatccctg 36
||||||| ||||||||||||||||
Sbjct: 1 gtacttgaagagtggttatccctg 24
