miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>33858_oar-mir-494:mirbase
Length = 98
Score = 194 bits (98), Expect = 8e-51
Identities = 98/98 (100%)
Strand = Plus / Plus
Query: 1 tatcttcgatacttgaaggagaggttatccgtgttgtattctctttatttatgatgaaac 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 tatcttcgatacttgaaggagaggttatccgtgttgtattctctttatttatgatgaaac 60
Query: 61 atacacgggaaacctcttttttagtatcaaatcccacc 98
||||||||||||||||||||||||||||||||||||||
Sbjct: 61 atacacgggaaacctcttttttagtatcaaatcccacc 98
>33399_bta-mir-494:mirbase
Length = 85
Score = 161 bits (81), Expect = 1e-40
Identities = 84/85 (98%)
Strand = Plus / Plus
Query: 6 tcgatacttgaaggagaggttatccgtgttgtattctctttatttatgatgaaacataca 65
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 1 tcgatacttgaaggagaggttatccgtgttgtcttctctttatttatgatgaaacataca 60
Query: 66 cgggaaacctcttttttagtatcaa 90
|||||||||||||||||||||||||
Sbjct: 61 cgggaaacctcttttttagtatcaa 85
>32183_mmu-mir-494:mirbase
Length = 85
Score = 149 bits (75), Expect = 4e-37
Identities = 81/83 (97%)
Strand = Plus / Plus
Query: 8 gatacttgaaggagaggttatccgtgttgtattctctttatttatgatgaaacatacacg 67
||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||
Sbjct: 3 gatacttgaaggagaggttgtccgtgttgtcttctctttatttatgatgaaacatacacg 62
Query: 68 ggaaacctcttttttagtatcaa 90
|||||||||||||||||||||||
Sbjct: 63 ggaaacctcttttttagtatcaa 85
>32936_rno-mir-494:mirbase
Length = 83
Score = 147 bits (74), Expect = 2e-36
Identities = 80/82 (97%)
Strand = Plus / Plus
Query: 8 gatacttgaaggagaggttatccgtgttgtattctctttatttatgatgaaacatacacg 67
||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||
Sbjct: 2 gatacttgaaggagaggttgtccgtgttgtcttctctttatttatgatgaaacatacacg 61
Query: 68 ggaaacctcttttttagtatca 89
||||||||||||||||||||||
Sbjct: 62 ggaaacctcttttttagtatca 83
>26863_cfa-mir-494:mirbase
Length = 81
Score = 137 bits (69), Expect = 2e-33
Identities = 78/81 (96%)
Strand = Plus / Plus
Query: 8 gatacttgaaggagaggttatccgtgttgtattctctttatttatgatgaaacatacacg 67
|||||| |||||||||||| |||||||||| |||||||||||||||||||||||||||||
Sbjct: 1 gatactcgaaggagaggttgtccgtgttgtcttctctttatttatgatgaaacatacacg 60
Query: 68 ggaaacctcttttttagtatc 88
|||||||||||||||||||||
Sbjct: 61 ggaaacctcttttttagtatc 81
>27204_eca-mir-494:mirbase
Length = 81
Score = 137 bits (69), Expect = 2e-33
Identities = 78/81 (96%)
Strand = Plus / Plus
Query: 8 gatacttgaaggagaggttatccgtgttgtattctctttatttatgatgaaacatacacg 67
|||||| |||||||||||| |||||||||| |||||||||||||||||||||||||||||
Sbjct: 1 gatactcgaaggagaggttgtccgtgttgtcttctctttatttatgatgaaacatacacg 60
Query: 68 ggaaacctcttttttagtatc 88
|||||||||||||||||||||
Sbjct: 61 ggaaacctcttttttagtatc 81
>28685_hsa-mir-494:mirbase
Length = 81
Score = 137 bits (69), Expect = 2e-33
Identities = 78/81 (96%)
Strand = Plus / Plus
Query: 8 gatacttgaaggagaggttatccgtgttgtattctctttatttatgatgaaacatacacg 67
|||||| |||||||||||| |||||||||| |||||||||||||||||||||||||||||
Sbjct: 1 gatactcgaaggagaggttgtccgtgttgtcttctctttatttatgatgaaacatacacg 60
Query: 68 ggaaacctcttttttagtatc 88
|||||||||||||||||||||
Sbjct: 61 ggaaacctcttttttagtatc 81
>31033_ppy-mir-494:mirbase
Length = 81
Score = 137 bits (69), Expect = 2e-33
Identities = 78/81 (96%)
Strand = Plus / Plus
Query: 8 gatacttgaaggagaggttatccgtgttgtattctctttatttatgatgaaacatacacg 67
|||||| |||||||||||| |||||||||| |||||||||||||||||||||||||||||
Sbjct: 1 gatactcgaaggagaggttgtccgtgttgtcttctctttatttatgatgaaacatacacg 60
Query: 68 ggaaacctcttttttagtatc 88
|||||||||||||||||||||
Sbjct: 61 ggaaacctcttttttagtatc 81
>30397_ptr-mir-494:mirbase
Length = 80
Score = 135 bits (68), Expect = 7e-33
Identities = 77/80 (96%)
Strand = Plus / Plus
Query: 9 atacttgaaggagaggttatccgtgttgtattctctttatttatgatgaaacatacacgg 68
||||| |||||||||||| |||||||||| ||||||||||||||||||||||||||||||
Sbjct: 1 atactcgaaggagaggttgtccgtgttgtcttctctttatttatgatgaaacatacacgg 60
Query: 69 gaaacctcttttttagtatc 88
||||||||||||||||||||
Sbjct: 61 gaaacctcttttttagtatc 80
>27934_mml-mir-494:mirbase
Length = 81
Score = 129 bits (65), Expect = 4e-31
Identities = 77/81 (95%)
Strand = Plus / Plus
Query: 8 gatacttgaaggagaggttatccgtgttgtattctctttatttatgatgaaacatacacg 67
|||||| |||||||||||| |||||||||| |||||||||||||||||||||||||||||
Sbjct: 1 gatactcgaaggagaggttgtccgtgttgtcttctctttatttatgatgaaacatacacg 60
Query: 68 ggaaacctcttttttagtatc 88
||||||||||| |||||||||
Sbjct: 61 ggaaacctcttctttagtatc 81
>34110_ssc-mir-494:mirbase
Length = 75
Score = 91.7 bits (46), Expect = 9e-20
Identities = 62/66 (93%), Gaps = 1/66 (1%)
Strand = Plus / Plus
Query: 15 gaaggagaggttatccgtgttgtattctctttatttatgatgaaacatacacgggaaacc 74
|||||||||||| || ||||||| ||||||||| ||||||||||||||||||||||||||
Sbjct: 4 gaaggagaggttgtc-gtgttgtcttctctttacttatgatgaaacatacacgggaaacc 62
Query: 75 tctttt 80
||||||
Sbjct: 63 tctttt 68
>27765_mml-mir-154:mirbase
Length = 84
Score = 46.1 bits (23), Expect = 5e-06
Identities = 41/47 (87%)
Strand = Plus / Plus
Query: 22 aggttatccgtgttgtattctctttatttatgatgaaacatacacgg 68
||||||||||||||| ||| |||||||| ||| ||| |||||||||
Sbjct: 16 aggttatccgtgttgccttcgctttatttgtgacgaatcatacacgg 62
>28220_mne-mir-154:mirbase
Length = 84
Score = 46.1 bits (23), Expect = 5e-06
Identities = 41/47 (87%)
Strand = Plus / Plus
Query: 22 aggttatccgtgttgtattctctttatttatgatgaaacatacacgg 68
||||||||||||||| ||| |||||||| ||| ||| |||||||||
Sbjct: 16 aggttatccgtgttgccttcgctttatttgtgacgaatcatacacgg 62
>28312_ggo-mir-154:mirbase
Length = 84
Score = 46.1 bits (23), Expect = 5e-06
Identities = 41/47 (87%)
Strand = Plus / Plus
Query: 22 aggttatccgtgttgtattctctttatttatgatgaaacatacacgg 68
||||||||||||||| ||| |||||||| ||| ||| |||||||||
Sbjct: 16 aggttatccgtgttgccttcgctttatttgtgacgaatcatacacgg 62
>28481_hsa-mir-154:mirbase
Length = 84
Score = 46.1 bits (23), Expect = 5e-06
Identities = 41/47 (87%)
Strand = Plus / Plus
Query: 22 aggttatccgtgttgtattctctttatttatgatgaaacatacacgg 68
||||||||||||||| ||| |||||||| ||| ||| |||||||||
Sbjct: 16 aggttatccgtgttgccttcgctttatttgtgacgaatcatacacgg 62
>30101_ppa-mir-154:mirbase
Length = 84
Score = 46.1 bits (23), Expect = 5e-06
Identities = 41/47 (87%)
Strand = Plus / Plus
Query: 22 aggttatccgtgttgtattctctttatttatgatgaaacatacacgg 68
||||||||||||||| ||| |||||||| ||| ||| |||||||||
Sbjct: 16 aggttatccgtgttgccttcgctttatttgtgacgaatcatacacgg 62
>30249_ptr-mir-154:mirbase
Length = 84
Score = 46.1 bits (23), Expect = 5e-06
Identities = 41/47 (87%)
Strand = Plus / Plus
Query: 22 aggttatccgtgttgtattctctttatttatgatgaaacatacacgg 68
||||||||||||||| ||| |||||||| ||| ||| |||||||||
Sbjct: 16 aggttatccgtgttgccttcgctttatttgtgacgaatcatacacgg 62
>30863_ppy-mir-154:mirbase
Length = 84
Score = 46.1 bits (23), Expect = 5e-06
Identities = 41/47 (87%)
Strand = Plus / Plus
Query: 22 aggttatccgtgttgtattctctttatttatgatgaaacatacacgg 68
||||||||||||||| ||| |||||||| ||| ||| |||||||||
Sbjct: 16 aggttatccgtgttgccttcgctttatttgtgacgaatcatacacgg 62
>33799_oar-mir-154a:mirbase
Length = 105
Score = 44.1 bits (22), Expect = 2e-05
Identities = 61/74 (82%)
Strand = Plus / Plus
Query: 22 aggttatccgtgttgtattctctttatttatgatgaaacatacacgggaaacctcttttt 81
||||||||||||| | ||| ||||| || ||| ||| ||||||||| |||| |||||
Sbjct: 25 aggttatccgtgtagccttcgctttacttgtgacgaatcatacacggttcacctattttt 84
Query: 82 tagtatcaaatccc 95
||||| ||||||||
Sbjct: 85 tagtaccaaatccc 98
>33800_oar-mir-154a:mirbase
Length = 105
Score = 44.1 bits (22), Expect = 2e-05
Identities = 61/74 (82%)
Strand = Plus / Plus
Query: 22 aggttatccgtgttgtattctctttatttatgatgaaacatacacgggaaacctcttttt 81
||||||||||||| | ||| ||||| || ||| ||| ||||||||| |||| |||||
Sbjct: 25 aggttatccgtgtagccttcgctttacttgtgacgaatcatacacggttcacctattttt 84
Query: 82 tagtatcaaatccc 95
||||| ||||||||
Sbjct: 85 tagtaccaaatccc 98
>27248_eca-mir-655:mirbase
Length = 97
Score = 42.1 bits (21), Expect = 7e-05
Identities = 54/65 (83%)
Strand = Plus / Plus
Query: 17 aggagaggttatccgtgttgtattctctttatttatgatgaaacatacacgggaaacctc 76
||||||||||||||||||| | ||| ||| ||| || ||||| ||||| || ||||||
Sbjct: 20 aggagaggttatccgtgttatgttcgcttcattcatcatgaataatacatggttaacctc 79
Query: 77 ttttt 81
|||||
Sbjct: 80 ttttt 84
>27989_mml-mir-539:mirbase
Length = 78
Score = 42.1 bits (21), Expect = 7e-05
Identities = 36/41 (87%)
Strand = Plus / Plus
Query: 25 ttatccgtgttgtattctctttatttatgatgaaacataca 65
|||||| || ||| ||| |||||||||||||||| ||||||
Sbjct: 16 ttatccttggtgtgttcgctttatttatgatgaatcataca 56
>28787_hsa-mir-539:mirbase
Length = 78
Score = 42.1 bits (21), Expect = 7e-05
Identities = 36/41 (87%)
Strand = Plus / Plus
Query: 25 ttatccgtgttgtattctctttatttatgatgaaacataca 65
|||||| || ||| ||| |||||||||||||||| ||||||
Sbjct: 16 ttatccttggtgtgttcgctttatttatgatgaatcataca 56
>28974_hsa-mir-655:mirbase
Length = 97
Score = 42.1 bits (21), Expect = 7e-05
Identities = 54/65 (83%)
Strand = Plus / Plus
Query: 17 aggagaggttatccgtgttgtattctctttatttatgatgaaacatacacgggaaacctc 76
||||||||||||||||||| | ||| ||| ||| || ||||| ||||| || ||||||
Sbjct: 20 aggagaggttatccgtgttatgttcgcttcattcatcatgaataatacatggttaacctc 79
Query: 77 ttttt 81
|||||
Sbjct: 80 ttttt 84
>30466_ptr-mir-539:mirbase
Length = 77
Score = 42.1 bits (21), Expect = 7e-05
Identities = 36/41 (87%)
Strand = Plus / Plus
Query: 25 ttatccgtgttgtattctctttatttatgatgaaacataca 65
|||||| || ||| ||| |||||||||||||||| ||||||
Sbjct: 15 ttatccttggtgtgttcgctttatttatgatgaatcataca 55
>31126_ppy-mir-539:mirbase
Length = 78
Score = 42.1 bits (21), Expect = 7e-05
Identities = 36/41 (87%)
Strand = Plus / Plus
Query: 25 ttatccgtgttgtattctctttatttatgatgaaacataca 65
|||||| || ||| ||| |||||||||||||||| ||||||
Sbjct: 16 ttatccttggtgtgttcgctttatttatgatgaatcataca 56
>31226_ppy-mir-655:mirbase
Length = 97
Score = 42.1 bits (21), Expect = 7e-05
Identities = 54/65 (83%)
Strand = Plus / Plus
Query: 17 aggagaggttatccgtgttgtattctctttatttatgatgaaacatacacgggaaacctc 76
||||||||||||||||||| | ||| ||| ||| || ||||| ||||| || ||||||
Sbjct: 20 aggagaggttatccgtgttatgttcgcttcattcatcatgaataatacatggttaacctc 79
Query: 77 ttttt 81
|||||
Sbjct: 80 ttttt 84
