miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>33861_oar-mir-495:mirbase
Length = 126
Score = 250 bits (126), Expect = 2e-67
Identities = 126/126 (100%)
Strand = Plus / Plus
Query: 1 gcacatccgtgcccatcagggctgaccgctggtacctgagaagaagtcgcccatgttctt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 gcacatccgtgcccatcagggctgaccgctggtacctgagaagaagtcgcccatgttctt 60
Query: 61 ttcgcttgatttgtgtcgaaacaaacatggtgcacttctttttcggtgtcaaatctcagc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 ttcgcttgatttgtgtcgaaacaaacatggtgcacttctttttcggtgtcaaatctcagc 120
Query: 121 gcgggg 126
||||||
Sbjct: 121 gcgggg 126
>27205_eca-mir-495:mirbase
Length = 82
Score = 107 bits (54), Expect = 2e-24
Identities = 72/78 (92%)
Strand = Plus / Plus
Query: 30 tggtacctgagaagaagtcgcccatgttcttttcgcttgatttgtgtcgaaacaaacatg 89
|||| ||||| ||||||| ||||||||| |||||||||||| |||| |||||||||||||
Sbjct: 1 tggtccctgaaaagaagttgcccatgttattttcgcttgatatgtgacgaaacaaacatg 60
Query: 90 gtgcacttctttttcggt 107
||||||||||||||||||
Sbjct: 61 gtgcacttctttttcggt 78
>27935_mml-mir-495:mirbase
Length = 82
Score = 107 bits (54), Expect = 2e-24
Identities = 72/78 (92%)
Strand = Plus / Plus
Query: 30 tggtacctgagaagaagtcgcccatgttcttttcgcttgatttgtgtcgaaacaaacatg 89
|||||||||| ||||||| ||||||||| ||||||||| || |||| |||||||||||||
Sbjct: 1 tggtacctgaaaagaagttgcccatgttattttcgctttatatgtgacgaaacaaacatg 60
Query: 90 gtgcacttctttttcggt 107
||||||||||||||||||
Sbjct: 61 gtgcacttctttttcggt 78
>28686_hsa-mir-495:mirbase
Length = 82
Score = 107 bits (54), Expect = 2e-24
Identities = 72/78 (92%)
Strand = Plus / Plus
Query: 30 tggtacctgagaagaagtcgcccatgttcttttcgcttgatttgtgtcgaaacaaacatg 89
|||||||||| ||||||| ||||||||| ||||||||| || |||| |||||||||||||
Sbjct: 1 tggtacctgaaaagaagttgcccatgttattttcgctttatatgtgacgaaacaaacatg 60
Query: 90 gtgcacttctttttcggt 107
||||||||||||||||||
Sbjct: 61 gtgcacttctttttcggt 78
>30398_ptr-mir-495:mirbase
Length = 81
Score = 105 bits (53), Expect = 8e-24
Identities = 71/77 (92%)
Strand = Plus / Plus
Query: 31 ggtacctgagaagaagtcgcccatgttcttttcgcttgatttgtgtcgaaacaaacatgg 90
||||||||| ||||||| ||||||||| ||||||||| || |||| ||||||||||||||
Sbjct: 1 ggtacctgaaaagaagttgcccatgttattttcgctttatatgtgacgaaacaaacatgg 60
Query: 91 tgcacttctttttcggt 107
|||||||||||||||||
Sbjct: 61 tgcacttctttttcggt 77
>31034_ppy-mir-495:mirbase
Length = 79
Score = 101 bits (51), Expect = 1e-22
Identities = 69/75 (92%)
Strand = Plus / Plus
Query: 33 tacctgagaagaagtcgcccatgttcttttcgcttgatttgtgtcgaaacaaacatggtg 92
||||||| ||||||| ||||||||| ||||||||| || |||| ||||||||||||||||
Sbjct: 1 tacctgaaaagaagttgcccatgttattttcgctttatatgtgacgaaacaaacatggtg 60
Query: 93 cacttctttttcggt 107
|||||||||||||||
Sbjct: 61 cacttctttttcggt 75
>33400_bta-mir-495:mirbase
Length = 81
Score = 83.8 bits (42), Expect = 3e-17
Identities = 58/62 (93%), Gaps = 1/62 (1%)
Strand = Plus / Plus
Query: 41 aagaagtcgcccatgttcttttcgcttgatttgtgtcgaaacaaacatggtgcacttctt 100
||||||| |||||||||||||||||| ||| |||| ||||||||||||||||||||||||
Sbjct: 12 aagaagttgcccatgttcttttcgct-gatatgtgacgaaacaaacatggtgcacttctt 70
Query: 101 tt 102
||
Sbjct: 71 tt 72
>32937_rno-mir-495:mirbase
Length = 80
Score = 77.8 bits (39), Expect = 2e-15
Identities = 68/75 (90%), Gaps = 2/75 (2%)
Strand = Plus / Plus
Query: 33 tacctgagaagaagtcgcccatgttctttt-cgcttg-atttgtgtcgaaacaaacatgg 90
||||||| ||||||| ||||||||| |||| ||||| ||||||| ||||||||||||||
Sbjct: 1 tacctgaaaagaagttgcccatgttatttttcgcttttatttgtgacgaaacaaacatgg 60
Query: 91 tgcacttctttttcg 105
|||||||||||||||
Sbjct: 61 tgcacttctttttcg 75
>26864_cfa-mir-495:mirbase
Length = 58
Score = 67.9 bits (34), Expect = 2e-12
Identities = 52/58 (89%)
Strand = Plus / Plus
Query: 43 gaagtcgcccatgttcttttcgcttgatttgtgtcgaaacaaacatggtgcacttctt 100
||||| |||| |||| |||||||||||| ||| ||||||||||||||||||||||||
Sbjct: 1 gaagttgcccgtgttattttcgcttgatacgtgccgaaacaaacatggtgcacttctt 58
>32184_mmu-mir-495:mirbase
Length = 63
Score = 60.0 bits (30), Expect = 4e-10
Identities = 56/62 (90%), Gaps = 2/62 (3%)
Strand = Plus / Plus
Query: 41 aagaagtcgcccatgttctttt-cgcttg-atttgtgtcgaaacaaacatggtgcacttc 98
||||||| ||||||||| |||| ||||| ||||||| ||||||||||||||||||||||
Sbjct: 2 aagaagttgcccatgttatttttcgcttttatttgtgacgaaacaaacatggtgcacttc 61
Query: 99 tt 100
||
Sbjct: 62 tt 63
>27229_eca-mir-543:mirbase
Length = 72
Score = 54.0 bits (27), Expect = 3e-08
Identities = 54/63 (85%)
Strand = Plus / Plus
Query: 42 agaagtcgcccatgttcttttcgcttgatttgtgtcgaaacaaacatggtgcacttcttt 101
|||||| |||| |||| ||||||||| ||||||| ||||||| | |||||||||||||
Sbjct: 8 agaagttgcccgtgtttttttcgctttatttgtgacgaaacattcgcggtgcacttcttt 67
Query: 102 ttc 104
|||
Sbjct: 68 ttc 70
>28791_hsa-mir-543:mirbase
Length = 78
Score = 54.0 bits (27), Expect = 3e-08
Identities = 54/63 (85%)
Strand = Plus / Plus
Query: 42 agaagtcgcccatgttcttttcgcttgatttgtgtcgaaacaaacatggtgcacttcttt 101
|||||| |||| |||| ||||||||| ||||||| ||||||| | |||||||||||||
Sbjct: 10 agaagttgcccgtgtttttttcgctttatttgtgacgaaacattcgcggtgcacttcttt 69
Query: 102 ttc 104
|||
Sbjct: 70 ttc 72
>31130_ppy-mir-543:mirbase
Length = 78
Score = 54.0 bits (27), Expect = 3e-08
Identities = 54/63 (85%)
Strand = Plus / Plus
Query: 42 agaagtcgcccatgttcttttcgcttgatttgtgtcgaaacaaacatggtgcacttcttt 101
|||||| |||| |||| ||||||||| ||||||| ||||||| | |||||||||||||
Sbjct: 10 agaagttgcccgtgtttttttcgctttatttgtgacgaaacattcgcggtgcacttcttt 69
Query: 102 ttc 104
|||
Sbjct: 70 ttc 72
>27993_mml-mir-543:mirbase
Length = 80
Score = 46.1 bits (23), Expect = 6e-06
Identities = 53/63 (84%)
Strand = Plus / Plus
Query: 42 agaagtcgcccatgttcttttcgcttgatttgtgtcgaaacaaacatggtgcacttcttt 101
|||||| |||| ||| ||||||||| ||||||| ||||||| | |||||||||||||
Sbjct: 12 agaagttgcccgtgtctttttcgctttatttgtgacgaaacattcgcggtgcacttcttt 71
Query: 102 ttc 104
|||
Sbjct: 72 ttc 74
>30467_ptr-mir-543:mirbase
Length = 77
Score = 46.1 bits (23), Expect = 6e-06
Identities = 50/59 (84%)
Strand = Plus / Plus
Query: 42 agaagtcgcccatgttcttttcgcttgatttgtgtcgaaacaaacatggtgcacttctt 100
|||||| |||| |||| ||||||||| ||||||| ||||||| | ||||||||||||
Sbjct: 9 agaagttgcccgtgtttttttcgctttatttgtgacgaaacattcgcggtgcacttctt 67
>26877_cfa-mir-543:mirbase
Length = 58
Score = 44.1 bits (22), Expect = 2e-05
Identities = 49/58 (84%)
Strand = Plus / Plus
Query: 43 gaagtcgcccatgttcttttcgcttgatttgtgtcgaaacaaacatggtgcacttctt 100
||||| |||| |||| ||||||||| ||||||| ||||||| | ||||||||||||
Sbjct: 1 gaagttgcccgtgtttttttcgctttatttgtgacgaaacattcgcggtgcacttctt 58
