miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>33863_oar-mir-496:mirbase
Length = 119
Score = 236 bits (119), Expect = 3e-63
Identities = 119/119 (100%)
Strand = Plus / Plus
Query: 1 gacacgtcagaagccagcatccgagtcgggtactcgaatggaggttgtccatggtgtgtt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 gacacgtcagaagccagcatccgagtcgggtactcgaatggaggttgtccatggtgtgtt 60
Query: 61 cattttatttatgatgagtattacatggccaatctcctttcagtactaaattcttcttg 119
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 cattttatttatgatgagtattacatggccaatctcctttcagtactaaattcttcttg 119
>27206_eca-mir-496:mirbase
Length = 103
Score = 180 bits (91), Expect = 2e-46
Identities = 91/91 (100%)
Strand = Plus / Plus
Query: 29 ggtactcgaatggaggttgtccatggtgtgttcattttatttatgatgagtattacatgg 88
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11 ggtactcgaatggaggttgtccatggtgtgttcattttatttatgatgagtattacatgg 70
Query: 89 ccaatctcctttcagtactaaattcttcttg 119
|||||||||||||||||||||||||||||||
Sbjct: 71 ccaatctcctttcagtactaaattcttcttg 101
>33401_bta-mir-496:mirbase
Length = 102
Score = 176 bits (89), Expect = 2e-45
Identities = 89/89 (100%)
Strand = Plus / Plus
Query: 28 gggtactcgaatggaggttgtccatggtgtgttcattttatttatgatgagtattacatg 87
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9 gggtactcgaatggaggttgtccatggtgtgttcattttatttatgatgagtattacatg 68
Query: 88 gccaatctcctttcagtactaaattcttc 116
|||||||||||||||||||||||||||||
Sbjct: 69 gccaatctcctttcagtactaaattcttc 97
>26865_cfa-mir-496:mirbase
Length = 98
Score = 174 bits (88), Expect = 9e-45
Identities = 94/96 (97%)
Strand = Plus / Plus
Query: 24 agtcgggtactcgaatggaggttgtccatggtgtgttcattttatttatgatgagtatta 83
|||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 agtcaggtacttgaatggaggttgtccatggtgtgttcattttatttatgatgagtatta 60
Query: 84 catggccaatctcctttcagtactaaattcttcttg 119
||||||||||||||||||||||||||||||||||||
Sbjct: 61 catggccaatctcctttcagtactaaattcttcttg 96
>27936_mml-mir-496:mirbase
Length = 102
Score = 172 bits (87), Expect = 4e-44
Identities = 96/99 (96%)
Strand = Plus / Plus
Query: 21 ccgagtcgggtactcgaatggaggttgtccatggtgtgttcattttatttatgatgagta 80
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2 ccgagtcaggtactcgaatggaggttgtccatggtgtgttcattttatttatgatgagta 61
Query: 81 ttacatggccaatctcctttcagtactaaattcttcttg 119
||||||||||||||||||||| ||||| |||||||||||
Sbjct: 62 ttacatggccaatctcctttcggtactcaattcttcttg 100
>28687_hsa-mir-496:mirbase
Length = 102
Score = 167 bits (84), Expect = 2e-42
Identities = 93/96 (96%)
Strand = Plus / Plus
Query: 24 agtcgggtactcgaatggaggttgtccatggtgtgttcattttatttatgatgagtatta 83
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5 agtcaggtactcgaatggaggttgtccatggtgtgttcattttatttatgatgagtatta 64
Query: 84 catggccaatctcctttcagtactaaattcttcttg 119
|||||||||||||||||| ||||| |||||||||||
Sbjct: 65 catggccaatctcctttcggtactcaattcttcttg 100
>30399_ptr-mir-496:mirbase
Length = 101
Score = 167 bits (84), Expect = 2e-42
Identities = 93/96 (96%)
Strand = Plus / Plus
Query: 24 agtcgggtactcgaatggaggttgtccatggtgtgttcattttatttatgatgagtatta 83
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4 agtcaggtactcgaatggaggttgtccatggtgtgttcattttatttatgatgagtatta 63
Query: 84 catggccaatctcctttcagtactaaattcttcttg 119
|||||||||||||||||| ||||| |||||||||||
Sbjct: 64 catggccaatctcctttcggtactcaattcttcttg 99
>31035_ppy-mir-496:mirbase
Length = 102
Score = 159 bits (80), Expect = 6e-40
Identities = 92/96 (95%)
Strand = Plus / Plus
Query: 24 agtcgggtactcgaatggaggttgtccatggtgtgttcattttatttatgatgagtatta 83
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5 agtcaggtactcgaatggaggttgtccatggtgtgttcattttatttatgatgagtatta 64
Query: 84 catggccaatctcctttcagtactaaattcttcttg 119
||||||||||||||||| ||||| |||||||||||
Sbjct: 65 catggccaatctccttttggtactcaattcttcttg 100
>32938_rno-mir-496:mirbase
Length = 79
Score = 135 bits (68), Expect = 8e-33
Identities = 68/68 (100%)
Strand = Plus / Plus
Query: 34 tcgaatggaggttgtccatggtgtgttcattttatttatgatgagtattacatggccaat 93
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6 tcgaatggaggttgtccatggtgtgttcattttatttatgatgagtattacatggccaat 65
Query: 94 ctcctttc 101
||||||||
Sbjct: 66 ctcctttc 73
>32185_mmu-mir-496:mirbase
Length = 79
Score = 127 bits (64), Expect = 2e-30
Identities = 67/68 (98%)
Strand = Plus / Plus
Query: 34 tcgaatggaggttgtccatggtgtgttcattttatttatgatgagtattacatggccaat 93
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6 tcgaatggaggttgcccatggtgtgttcattttatttatgatgagtattacatggccaat 65
Query: 94 ctcctttc 101
||||||||
Sbjct: 66 ctcctttc 73
