miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>33865_oar-mir-539:mirbase
Length = 110
Score = 218 bits (110), Expect = 6e-58
Identities = 110/110 (100%)
Strand = Plus / Plus
Query: 1 cacgtcgctatctcatacttgaggagaaattatccttggtgtgttcactttatttgggat 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 cacgtcgctatctcatacttgaggagaaattatccttggtgtgttcactttatttgggat 60
Query: 61 gaatcatacaaggacaatttctttttgagtatcaaatcctgcctcggcgg 110
||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 gaatcatacaaggacaatttctttttgagtatcaaatcctgcctcggcgg 110
>33411_bta-mir-539:mirbase
Length = 78
Score = 139 bits (70), Expect = 5e-34
Identities = 76/78 (97%)
Strand = Plus / Plus
Query: 15 atacttgaggagaaattatccttggtgtgttcactttatttgggatgaatcatacaagga 74
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 1 atacttgaggagaaattatccttggtgtgttcgctttatttgggatgaatcatacaagga 60
Query: 75 caatttctttttgagtat 92
|||||||||| |||||||
Sbjct: 61 caatttctttctgagtat 78
>27225_eca-mir-539:mirbase
Length = 78
Score = 131 bits (66), Expect = 1e-31
Identities = 75/78 (96%)
Strand = Plus / Plus
Query: 15 atacttgaggagaaattatccttggtgtgttcactttatttgggatgaatcatacaagga 74
|||||||||||||||||||||||| ||||||| ||||||||| |||||||||||||||||
Sbjct: 1 atacttgaggagaaattatccttgctgtgttcgctttatttgtgatgaatcatacaagga 60
Query: 75 caatttctttttgagtat 92
||||||||||||||||||
Sbjct: 61 caatttctttttgagtat 78
>27989_mml-mir-539:mirbase
Length = 78
Score = 131 bits (66), Expect = 1e-31
Identities = 75/78 (96%)
Strand = Plus / Plus
Query: 15 atacttgaggagaaattatccttggtgtgttcactttatttgggatgaatcatacaagga 74
|||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||
Sbjct: 1 atacttgaggagaaattatccttggtgtgttcgctttatttatgatgaatcatacaagga 60
Query: 75 caatttctttttgagtat 92
||||||||||||||||||
Sbjct: 61 caatttctttttgagtat 78
>28787_hsa-mir-539:mirbase
Length = 78
Score = 131 bits (66), Expect = 1e-31
Identities = 75/78 (96%)
Strand = Plus / Plus
Query: 15 atacttgaggagaaattatccttggtgtgttcactttatttgggatgaatcatacaagga 74
|||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||
Sbjct: 1 atacttgaggagaaattatccttggtgtgttcgctttatttatgatgaatcatacaagga 60
Query: 75 caatttctttttgagtat 92
||||||||||||||||||
Sbjct: 61 caatttctttttgagtat 78
>31126_ppy-mir-539:mirbase
Length = 78
Score = 131 bits (66), Expect = 1e-31
Identities = 75/78 (96%)
Strand = Plus / Plus
Query: 15 atacttgaggagaaattatccttggtgtgttcactttatttgggatgaatcatacaagga 74
|||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||
Sbjct: 1 atacttgaggagaaattatccttggtgtgttcgctttatttatgatgaatcatacaagga 60
Query: 75 caatttctttttgagtat 92
||||||||||||||||||
Sbjct: 61 caatttctttttgagtat 78
>30466_ptr-mir-539:mirbase
Length = 77
Score = 129 bits (65), Expect = 5e-31
Identities = 74/77 (96%)
Strand = Plus / Plus
Query: 16 tacttgaggagaaattatccttggtgtgttcactttatttgggatgaatcatacaaggac 75
||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||
Sbjct: 1 tacttgaggagaaattatccttggtgtgttcgctttatttatgatgaatcatacaaggac 60
Query: 76 aatttctttttgagtat 92
|||||||||||||||||
Sbjct: 61 aatttctttttgagtat 77
>26875_cfa-mir-539:mirbase
Length = 76
Score = 111 bits (56), Expect = 1e-25
Identities = 71/76 (93%)
Strand = Plus / Plus
Query: 16 tacttgaggagaaattatccttggtgtgttcactttatttgggatgaatcatacaaggac 75
||||||||||||||||||||||||||||||| || | |||| || |||||||||||||||
Sbjct: 1 tacttgaggagaaattatccttggtgtgttcgctgtgtttgtgaggaatcatacaaggac 60
Query: 76 aatttctttttgagta 91
||||||||||||||||
Sbjct: 61 aatttctttttgagta 76
>33070_rno-mir-3576:mirbase
Length = 115
Score = 95.6 bits (48), Expect = 6e-21
Identities = 81/91 (89%), Gaps = 2/91 (2%)
Strand = Plus / Minus
Query: 13 tcatacttgaggagaaattatccttggtgtgttcactttatttgggatgaatcatacaag 72
||||||||||||||||||||||||||||||||| | | ||| ||||||||||||||||
Sbjct: 97 tcatacttgaggagaaattatccttggtgtgtttgc--tcttttggatgaatcatacaag 40
Query: 73 gacaatttctttttgagtatcaaatcctgcc 103
| |||||||||| ||||||||||| |||||
Sbjct: 39 ggtaatttcttttcgagtatcaaatactgcc 9
>32201_mmu-mir-539:mirbase
Length = 74
Score = 89.7 bits (45), Expect = 4e-19
Identities = 69/76 (90%), Gaps = 2/76 (2%)
Strand = Plus / Plus
Query: 16 tacttgaggagaaattatccttggtgtgttcactttatttgggatgaatcatacaaggac 75
|||||||||||||||||||||||||||||| | | ||| ||||||||||||||||||
Sbjct: 1 tacttgaggagaaattatccttggtgtgttggc--tcttttggatgaatcatacaaggat 58
Query: 76 aatttctttttgagta 91
||||||||||||||||
Sbjct: 59 aatttctttttgagta 74
>32202_mmu-mir-539:mirbase
Length = 74
Score = 89.7 bits (45), Expect = 4e-19
Identities = 69/76 (90%), Gaps = 2/76 (2%)
Strand = Plus / Plus
Query: 16 tacttgaggagaaattatccttggtgtgttcactttatttgggatgaatcatacaaggac 75
|||||||||||||||||||||||||||||| | | ||| ||||||||||||||||||
Sbjct: 1 tacttgaggagaaattatccttggtgtgttggc--tcttttggatgaatcatacaaggat 58
Query: 76 aatttctttttgagta 91
||||||||||||||||
Sbjct: 59 aatttctttttgagta 74
>32949_rno-mir-539:mirbase
Length = 76
Score = 77.8 bits (39), Expect = 2e-15
Identities = 69/78 (88%), Gaps = 2/78 (2%)
Strand = Plus / Plus
Query: 15 atacttgaggagaaattatccttggtgtgttcactttatttgggatgaatcatacaagga 74
||||||||||||||||||||||||||||||| | | ||| |||||||||||||||||
Sbjct: 1 atacttgaggagaaattatccttggtgtgtttgc--tcttttggatgaatcatacaaggg 58
Query: 75 caatttctttttgagtat 92
|||||||||| ||||||
Sbjct: 59 taatttcttttcgagtat 76
