miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>33866_oar-mir-541:mirbase
Length = 115
Score = 228 bits (115), Expect = 7e-61
Identities = 115/115 (100%)
Strand = Plus / Plus
Query: 1 tctgaacttgggccaacgtcagggaaaggattctgctgtcggtcccactccaaagttcga 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 tctgaacttgggccaacgtcagggaaaggattctgctgtcggtcccactccaaagttcga 60
Query: 61 aacatgggtggtgggcacagaatccggcctttgctgtggcacacgccgcctgctc 115
|||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 aacatgggtggtgggcacagaatccggcctttgctgtggcacacgccgcctgctc 115
>33412_bta-mir-541:mirbase
Length = 84
Score = 135 bits (68), Expect = 8e-33
Identities = 77/80 (96%)
Strand = Plus / Plus
Query: 16 acgtcagggaaaggattctgctgtcggtcccactccaaagttcgaaacatgggtggtggg 75
||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||
Sbjct: 1 acgtcagggaaaggattctgctgtcggtcccactccaaagttcaaaaaatgggtggtggg 60
Query: 76 cacagaatccggcctttgct 95
||||||||||||||| ||||
Sbjct: 61 cacagaatccggcctctgct 80
>27226_eca-mir-541:mirbase
Length = 84
Score = 115 bits (58), Expect = 7e-27
Identities = 67/70 (95%)
Strand = Plus / Plus
Query: 16 acgtcagggaaaggattctgctgtcggtcccactccaaagttcgaaacatgggtggtggg 75
||||||||||||||||||||||||||||||||||||| |||||| || ||||||||||||
Sbjct: 1 acgtcagggaaaggattctgctgtcggtcccactccagagttcgcaaaatgggtggtggg 60
Query: 76 cacagaatcc 85
||||||||||
Sbjct: 61 cacagaatcc 70
>28788_hsa-mir-541:mirbase
Length = 84
Score = 105 bits (53), Expect = 7e-24
Identities = 65/69 (94%)
Strand = Plus / Plus
Query: 16 acgtcagggaaaggattctgctgtcggtcccactccaaagttcgaaacatgggtggtggg 75
||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||
Sbjct: 1 acgtcagggaaaggattctgctgtcggtcccactccaaagttcacagaatgggtggtggg 60
Query: 76 cacagaatc 84
|||||||||
Sbjct: 61 cacagaatc 69
>27990_mml-mir-541:mirbase
Length = 84
Score = 103 bits (52), Expect = 3e-23
Identities = 67/72 (93%)
Strand = Plus / Plus
Query: 16 acgtcagggaaaggattctgctgtcggtcccactccaaagttcgaaacatgggtggtggg 75
||||||||||||||||||||||||||||||||||||||||| | | ||||||||||||
Sbjct: 1 acgtcagggaaaggattctgctgtcggtcccactccaaagtgcatagaatgggtggtggg 60
Query: 76 cacagaatccgg 87
||||||||||||
Sbjct: 61 cacagaatccgg 72
>31127_ppy-mir-541:mirbase
Length = 84
Score = 103 bits (52), Expect = 3e-23
Identities = 67/72 (93%)
Strand = Plus / Plus
Query: 16 acgtcagggaaaggattctgctgtcggtcccactccaaagttcgaaacatgggtggtggg 75
|||||||||||||||||||||||||||||||||||||||||| | ||||||||||||
Sbjct: 1 acgtcagggaaaggattctgctgtcggtcccactccaaagtttacagaatgggtggtggg 60
Query: 76 cacagaatccgg 87
||||||||||||
Sbjct: 61 cacagaatccgg 72
