miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>33871_oar-mir-544:mirbase
Length = 101
Score = 200 bits (101), Expect = 1e-52
Identities = 101/101 (100%)
Strand = Plus / Plus
Query: 1 tcagatttacatcacctagggatcttgttaaaaggcagattctgattcagggaccaagat 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 tcagatttacatcacctagggatcttgttaaaaggcagattctgattcagggaccaagat 60
Query: 61 tctgcatttttagcaagttcccaagtcatgctaatgcttct 101
|||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 tctgcatttttagcaagttcccaagtcatgctaatgcttct 101
>33415_bta-mir-544a:mirbase
Length = 91
Score = 165 bits (83), Expect = 8e-42
Identities = 89/91 (97%)
Strand = Plus / Plus
Query: 5 atttacatcacctagggatcttgttaaaaggcagattctgattcagggaccaagattctg 64
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 attttcatcacctagggatcttgttaaaaggcagattctgattcagggaccaagattctg 60
Query: 65 catttttagcaagttcccaagtcatgctaat 95
|||||||||||||||||||||| ||||||||
Sbjct: 61 catttttagcaagttcccaagtgatgctaat 91
>27230_eca-mir-544-2:mirbase
Length = 90
Score = 163 bits (82), Expect = 3e-41
Identities = 88/90 (97%)
Strand = Plus / Plus
Query: 5 atttacatcacctagggatcttgttaaaaggcagattctgattcagggaccaagattctg 64
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 attttcatcacctagggatcttgttaaaaggcagattctgattcagggaccaagattctg 60
Query: 65 catttttagcaagttcccaagtcatgctaa 94
|||||||||||||||||||||| |||||||
Sbjct: 61 catttttagcaagttcccaagtgatgctaa 90
>26878_cfa-mir-544:mirbase
Length = 89
Score = 153 bits (77), Expect = 3e-38
Identities = 86/89 (96%)
Strand = Plus / Plus
Query: 5 atttacatcacctagggatcttgttaaaaggcagattctgattcagggaccaagattctg 64
|||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 1 attttcatcacctagggatcttgttaaaaggcagattctgatttagggaccaagattctg 60
Query: 65 catttttagcaagttcccaagtcatgcta 93
|||||||||||||||||||||| ||||||
Sbjct: 61 catttttagcaagttcccaagtgatgcta 89
>27994_mml-mir-544:mirbase
Length = 91
Score = 149 bits (75), Expect = 5e-37
Identities = 87/91 (95%)
Strand = Plus / Plus
Query: 5 atttacatcacctagggatcttgttaaaaggcagattctgattcagggaccaagattctg 64
|||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 1 attttcatcacctagggatcttgttaaaaagcagattctgattcagggaccaagattctg 60
Query: 65 catttttagcaagttcccaagtcatgctaat 95
|||||||||||||||| ||||| ||||||||
Sbjct: 61 catttttagcaagttctcaagtgatgctaat 91
>28792_hsa-mir-544:mirbase
Length = 91
Score = 149 bits (75), Expect = 5e-37
Identities = 87/91 (95%)
Strand = Plus / Plus
Query: 5 atttacatcacctagggatcttgttaaaaggcagattctgattcagggaccaagattctg 64
|||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 1 attttcatcacctagggatcttgttaaaaagcagattctgattcagggaccaagattctg 60
Query: 65 catttttagcaagttcccaagtcatgctaat 95
|||||||||||||||| ||||| ||||||||
Sbjct: 61 catttttagcaagttctcaagtgatgctaat 91
>31131_ppy-mir-544:mirbase
Length = 91
Score = 149 bits (75), Expect = 5e-37
Identities = 87/91 (95%)
Strand = Plus / Plus
Query: 5 atttacatcacctagggatcttgttaaaaggcagattctgattcagggaccaagattctg 64
|||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 1 attttcatcacctagggatcttgttaaaaagcagattctgattcagggaccaagattctg 60
Query: 65 catttttagcaagttcccaagtcatgctaat 95
|||||||||||||||| ||||| ||||||||
Sbjct: 61 catttttagcaagttctcaagtgatgctaat 91
>30468_ptr-mir-544:mirbase
Length = 90
Score = 147 bits (74), Expect = 2e-36
Identities = 83/86 (96%)
Strand = Plus / Plus
Query: 10 catcacctagggatcttgttaaaaggcagattctgattcagggaccaagattctgcattt 69
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 5 catcacctagggatcttgttaaaaagcagattctgattcagggaccaagattctgcattt 64
Query: 70 ttagcaagttcccaagtcatgctaat 95
||||||||||| ||||| ||||||||
Sbjct: 65 ttagcaagttctcaagtgatgctaat 90
>32955_rno-mir-544:mirbase
Length = 78
Score = 115 bits (58), Expect = 6e-27
Identities = 70/74 (94%)
Strand = Plus / Plus
Query: 13 cacctagggatcttgttaaaaggcagattctgattcagggaccaagattctgcattttta 72
||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||
Sbjct: 1 cacctagggatcttgttaaaaagcagattctgattgagggaccaagattctgcattttta 60
Query: 73 gcaagttcccaagt 86
||||| || |||||
Sbjct: 61 gcaagctctcaagt 74
>32209_mmu-mir-544:mirbase
Length = 78
Score = 99.6 bits (50), Expect = 4e-22
Identities = 68/74 (91%)
Strand = Plus / Plus
Query: 13 cacctagggatcttgttaaaaggcagattctgattcagggaccaagattctgcattttta 72
||||||||||||||||||||| ||||| ||||||| |||| |||||||||||||||||||
Sbjct: 1 cacctagggatcttgttaaaaagcagagtctgattgaggggccaagattctgcattttta 60
Query: 73 gcaagttcccaagt 86
||||| || |||||
Sbjct: 61 gcaagctctcaagt 74
>32210_mmu-mir-544:mirbase
Length = 78
Score = 99.6 bits (50), Expect = 4e-22
Identities = 68/74 (91%)
Strand = Plus / Plus
Query: 13 cacctagggatcttgttaaaaggcagattctgattcagggaccaagattctgcattttta 72
||||||||||||||||||||| ||||| ||||||| |||| |||||||||||||||||||
Sbjct: 1 cacctagggatcttgttaaaaagcagagtctgattgaggggccaagattctgcattttta 60
Query: 73 gcaagttcccaagt 86
||||| || |||||
Sbjct: 61 gcaagctctcaagt 74
>27231_eca-mir-544b:mirbase
Length = 76
Score = 46.1 bits (23), Expect = 5e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 54 ccaagattctgcatttttagcaagttc 80
||||||||||||||||||| |||||||
Sbjct: 50 ccaagattctgcatttttaacaagttc 76
