miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>33873_oar-mir-654:mirbase
Length = 105
Score = 208 bits (105), Expect = 6e-55
Identities = 105/105 (100%)
Strand = Plus / Plus
Query: 1 gagcccccaacctgggttagtggaaaggtggtgggctgcggagcatttgcttccttcgcg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 gagcccccaacctgggttagtggaaaggtggtgggctgcggagcatttgcttccttcgcg 60
Query: 61 tcatatgtctgctgaccatcacccttagagccctctcgctgagga 105
|||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 tcatatgtctgctgaccatcacccttagagccctctcgctgagga 105
>33438_bta-mir-654:mirbase
Length = 81
Score = 111 bits (56), Expect = 1e-25
Identities = 71/76 (93%)
Strand = Plus / Plus
Query: 14 gggttagtggaaaggtggtgggctgcggagcatttgcttccttcgcgtcatatgtctgct 73
|||||||||||||||||||||||||| || ||| ||||||||||| ||||||||||||||
Sbjct: 1 gggttagtggaaaggtggtgggctgcagaacatgtgcttccttcgtgtcatatgtctgct 60
Query: 74 gaccatcacccttaga 89
|||||||||| |||||
Sbjct: 61 gaccatcacctttaga 76
>28086_mml-mir-654:mirbase
Length = 81
Score = 56.0 bits (28), Expect = 5e-09
Identities = 64/76 (84%)
Strand = Plus / Plus
Query: 14 gggttagtggaaaggtggtgggctgcggagcatttgcttccttcgcgtcatatgtctgct 73
|||| ||||||||| |||||||| || || ||| |||| |||| | ||||||||||||
Sbjct: 1 gggtaagtggaaagatggtgggccgcagaacatgtgctgagttcgtgccatatgtctgct 60
Query: 74 gaccatcacccttaga 89
|||||||||| |||||
Sbjct: 61 gaccatcacctttaga 76
>28087_mml-mir-654:mirbase
Length = 81
Score = 56.0 bits (28), Expect = 5e-09
Identities = 64/76 (84%)
Strand = Plus / Plus
Query: 14 gggttagtggaaaggtggtgggctgcggagcatttgcttccttcgcgtcatatgtctgct 73
|||| ||||||||| |||||||| || || ||| |||| |||| | ||||||||||||
Sbjct: 1 gggtaagtggaaagatggtgggccgcagaacatgtgctgagttcgtgccatatgtctgct 60
Query: 74 gaccatcacccttaga 89
|||||||||| |||||
Sbjct: 61 gaccatcacctttaga 76
>28972_hsa-mir-654:mirbase
Length = 81
Score = 56.0 bits (28), Expect = 5e-09
Identities = 64/76 (84%)
Strand = Plus / Plus
Query: 14 gggttagtggaaaggtggtgggctgcggagcatttgcttccttcgcgtcatatgtctgct 73
|||| ||||||||| |||||||| || || ||| |||| |||| | ||||||||||||
Sbjct: 1 gggtaagtggaaagatggtgggccgcagaacatgtgctgagttcgtgccatatgtctgct 60
Query: 74 gaccatcacccttaga 89
|||||||||| |||||
Sbjct: 61 gaccatcacctttaga 76
>28973_hsa-mir-654:mirbase
Length = 81
Score = 56.0 bits (28), Expect = 5e-09
Identities = 64/76 (84%)
Strand = Plus / Plus
Query: 14 gggttagtggaaaggtggtgggctgcggagcatttgcttccttcgcgtcatatgtctgct 73
|||| ||||||||| |||||||| || || ||| |||| |||| | ||||||||||||
Sbjct: 1 gggtaagtggaaagatggtgggccgcagaacatgtgctgagttcgtgccatatgtctgct 60
Query: 74 gaccatcacccttaga 89
|||||||||| |||||
Sbjct: 61 gaccatcacctttaga 76
>31224_ppy-mir-654:mirbase
Length = 81
Score = 56.0 bits (28), Expect = 5e-09
Identities = 64/76 (84%)
Strand = Plus / Plus
Query: 14 gggttagtggaaaggtggtgggctgcggagcatttgcttccttcgcgtcatatgtctgct 73
|||| ||||||||| |||||||| || || ||| |||| |||| | ||||||||||||
Sbjct: 1 gggtaagtggaaagatggtgggccgcagaacatgtgctgagttcgtgccatatgtctgct 60
Query: 74 gaccatcacccttaga 89
|||||||||| |||||
Sbjct: 61 gaccatcacctttaga 76
>31225_ppy-mir-654:mirbase
Length = 81
Score = 56.0 bits (28), Expect = 5e-09
Identities = 64/76 (84%)
Strand = Plus / Plus
Query: 14 gggttagtggaaaggtggtgggctgcggagcatttgcttccttcgcgtcatatgtctgct 73
|||| ||||||||| |||||||| || || ||| |||| |||| | ||||||||||||
Sbjct: 1 gggtaagtggaaagatggtgggccgcagaacatgtgctgagttcgtgccatatgtctgct 60
Query: 74 gaccatcacccttaga 89
|||||||||| |||||
Sbjct: 61 gaccatcacctttaga 76
>30575_ptr-mir-654:mirbase
Length = 80
Score = 54.0 bits (27), Expect = 2e-08
Identities = 60/71 (84%)
Strand = Plus / Plus
Query: 19 agtggaaaggtggtgggctgcggagcatttgcttccttcgcgtcatatgtctgctgacca 78
||||||||| |||||||| || || ||| |||| |||| | |||||||||||||||||
Sbjct: 5 agtggaaagatggtgggccgcagaacatgtgctgagttcgtgccatatgtctgctgacca 64
Query: 79 tcacccttaga 89
||||| |||||
Sbjct: 65 tcacctttaga 75
>32228_mmu-mir-654:mirbase
Length = 84
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 60 gtcatatgtctgctgaccatcacc 83
||||||||||||||||||||||||
Sbjct: 49 gtcatatgtctgctgaccatcacc 72
>32229_mmu-mir-654:mirbase
Length = 84
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 60 gtcatatgtctgctgaccatcacc 83
||||||||||||||||||||||||
Sbjct: 49 gtcatatgtctgctgaccatcacc 72
