miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>33885_oar-mir-1193:mirbase
Length = 104
Score = 206 bits (104), Expect = 2e-54
Identities = 104/104 (100%)
Strand = Plus / Plus
Query: 1 gccgctctccagggtagctgaggggatggtagaccggtgacgtgcacttcatttatgatg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 gccgctctccagggtagctgaggggatggtagaccggtgacgtgcacttcatttatgatg 60
Query: 61 taggtcacccgtttgactatcaaccagcacccagtccatctgtg 104
||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 taggtcacccgtttgactatcaaccagcacccagtccatctgtg 104
>33469_bta-mir-1193:mirbase
Length = 105
Score = 178 bits (90), Expect = 5e-46
Identities = 99/102 (97%)
Strand = Plus / Plus
Query: 1 gccgctctccagggtagctgaggggatggtagaccggtgacgtgcacttcatttatgatg 60
|||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||
Sbjct: 4 gccgctctccagggtagctgaggggatggtaggccggtgacgtgcacttcatttacgatg 63
Query: 61 taggtcacccgtttgactatcaaccagcacccagtccatctg 102
||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 64 taggtcacccgtttgactatccaccagcacccagtccatctg 105
>27284_eca-mir-1193:mirbase
Length = 121
Score = 170 bits (86), Expect = 1e-43
Identities = 95/98 (96%)
Strand = Plus / Plus
Query: 5 ctctccagggtagctgaggggatggtagaccggtgacgtgcacttcatttatgatgtagg 64
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24 ctctgcagggtagctgaggggatggtagaccggtgacgtgcacttcatttatgatgtagg 83
Query: 65 tcacccgtttgactatcaaccagcacccagtccatctg 102
||||||||||||||||| | ||||||||||||||||||
Sbjct: 84 tcacccgtttgactatccatcagcacccagtccatctg 121
>29058_hsa-mir-1193:mirbase
Length = 78
Score = 133 bits (67), Expect = 3e-32
Identities = 73/75 (97%)
Strand = Plus / Plus
Query: 14 gtagctgaggggatggtagaccggtgacgtgcacttcatttatgatgtaggtcacccgtt 73
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 1 gtagctgaggggatggtagaccggtgacgtgcacttcatttacgatgtaggtcacccgtt 60
Query: 74 tgactatcaaccagc 88
|||||||| ||||||
Sbjct: 61 tgactatccaccagc 75
>32387_mmu-mir-1193:mirbase
Length = 121
Score = 117 bits (59), Expect = 2e-27
Identities = 83/91 (91%)
Strand = Plus / Plus
Query: 12 gggtagctgaggggatggtagaccggtgacgtgcacttcatttatgatgtaggtcacccg 71
||||||||| | |||||||||||||||||||| ||||||||||||| |||||||||||||
Sbjct: 31 gggtagctgtgtggatggtagaccggtgacgtacacttcatttatgctgtaggtcacccg 90
Query: 72 tttgactatcaaccagcacccagtccatctg 102
||| |||||| |||| ||||||| |||||||
Sbjct: 91 ttttactatccaccaacacccagaccatctg 121
>32388_mmu-mir-1193:mirbase
Length = 121
Score = 117 bits (59), Expect = 2e-27
Identities = 83/91 (91%)
Strand = Plus / Plus
Query: 12 gggtagctgaggggatggtagaccggtgacgtgcacttcatttatgatgtaggtcacccg 71
||||||||| | |||||||||||||||||||| ||||||||||||| |||||||||||||
Sbjct: 31 gggtagctgtgtggatggtagaccggtgacgtacacttcatttatgctgtaggtcacccg 90
Query: 72 tttgactatcaaccagcacccagtccatctg 102
||| |||||| |||| ||||||| |||||||
Sbjct: 91 ttttactatccaccaacacccagaccatctg 121
>33013_rno-mir-1193:mirbase
Length = 120
Score = 117 bits (59), Expect = 2e-27
Identities = 86/95 (90%)
Strand = Plus / Plus
Query: 10 cagggtagctgaggggatggtagaccggtgacgtgcacttcatttatgatgtaggtcacc 69
||||||||||| | |||||||| ||||||||||||||||||||||||| |||||||||||
Sbjct: 16 cagggtagctgtgaggatggtaaaccggtgacgtgcacttcatttatgctgtaggtcacc 75
Query: 70 cgtttgactatcaaccagcacccagtccatctgtg 104
||||| |||||| ||||||||||| || ||||||
Sbjct: 76 cgttttactatccgccagcacccagaccgtctgtg 110
>33014_rno-mir-1193:mirbase
Length = 120
Score = 117 bits (59), Expect = 2e-27
Identities = 86/95 (90%)
Strand = Plus / Plus
Query: 10 cagggtagctgaggggatggtagaccggtgacgtgcacttcatttatgatgtaggtcacc 69
||||||||||| | |||||||| ||||||||||||||||||||||||| |||||||||||
Sbjct: 16 cagggtagctgtgaggatggtaaaccggtgacgtgcacttcatttatgctgtaggtcacc 75
Query: 70 cgtttgactatcaaccagcacccagtccatctgtg 104
||||| |||||| ||||||||||| || ||||||
Sbjct: 76 cgttttactatccgccagcacccagaccgtctgtg 110
