miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>33886_oar-mir-1197:mirbase
Length = 129
Score = 256 bits (129), Expect = 3e-69
Identities = 129/129 (100%)
Strand = Plus / Plus
Query: 1 gaggcgaggtcggcatcccttcctggtatttgaagacgcggttgaccatggtgtgtacgc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 gaggcgaggtcggcatcccttcctggtatttgaagacgcggttgaccatggtgtgtacgc 60
Query: 61 tttatttatgacgtaggacacatggtctacttcttctcgatatcacatcttcgccttgga 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 tttatttatgacgtaggacacatggtctacttcttctcgatatcacatcttcgccttgga 120
Query: 121 agaccttcc 129
|||||||||
Sbjct: 121 agaccttcc 129
>33470_bta-mir-1197:mirbase
Length = 97
Score = 192 bits (97), Expect = 4e-50
Identities = 97/97 (100%)
Strand = Plus / Plus
Query: 19 cttcctggtatttgaagacgcggttgaccatggtgtgtacgctttatttatgacgtagga 78
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 cttcctggtatttgaagacgcggttgaccatggtgtgtacgctttatttatgacgtagga 60
Query: 79 cacatggtctacttcttctcgatatcacatcttcgcc 115
|||||||||||||||||||||||||||||||||||||
Sbjct: 61 cacatggtctacttcttctcgatatcacatcttcgcc 97
>31285_ppy-mir-1197:mirbase
Length = 88
Score = 157 bits (79), Expect = 2e-39
Identities = 85/87 (97%)
Strand = Plus / Plus
Query: 19 cttcctggtatttgaagacgcggttgaccatggtgtgtacgctttatttatgacgtagga 78
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 2 cttcctggtatttgaagatgcggttgaccatggtgtgtacgctttatttatgacgtagga 61
Query: 79 cacatggtctacttcttctcgatatca 105
|||||||||||||||||||| ||||||
Sbjct: 62 cacatggtctacttcttctcaatatca 88
>32392_mmu-mir-1197:mirbase
Length = 120
Score = 155 bits (78), Expect = 9e-39
Identities = 84/86 (97%)
Strand = Plus / Plus
Query: 25 ggtatttgaagacgcggttgaccatggtgtgtacgctttatttatgacgtaggacacatg 84
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 31 ggtatttgaagatgcggttgaccatggtgtgtacgctttatttatgacgtaggacacatg 90
Query: 85 gtctacttcttctcgatatcacatct 110
|||||||||||||| |||||||||||
Sbjct: 91 gtctacttcttctcaatatcacatct 116
>29059_hsa-mir-1197:mirbase
Length = 88
Score = 149 bits (75), Expect = 6e-37
Identities = 84/87 (96%)
Strand = Plus / Plus
Query: 19 cttcctggtatttgaagacgcggttgaccatggtgtgtacgctttatttatgacgtagga 78
|||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||
Sbjct: 2 cttcctggtatttgaagatgcggttgaccatggtgtgtacgctttatttgtgacgtagga 61
Query: 79 cacatggtctacttcttctcgatatca 105
|||||||||||||||||||| ||||||
Sbjct: 62 cacatggtctacttcttctcaatatca 88
>30638_ptr-mir-1197:mirbase
Length = 87
Score = 149 bits (75), Expect = 6e-37
Identities = 84/87 (96%)
Strand = Plus / Plus
Query: 19 cttcctggtatttgaagacgcggttgaccatggtgtgtacgctttatttatgacgtagga 78
|||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||
Sbjct: 1 cttcctggtatttgaagatgcggttgaccatggtgtgtacgctttatttgtgacgtagga 60
Query: 79 cacatggtctacttcttctcgatatca 105
|||||||||||||||||||| ||||||
Sbjct: 61 cacatggtctacttcttctcaatatca 87
>27285_eca-mir-1197:mirbase
Length = 120
Score = 143 bits (72), Expect = 4e-35
Identities = 87/92 (94%)
Strand = Plus / Plus
Query: 19 cttcctggtatttgaagacgcggttgaccatggtgtgtacgctttatttatgacgtagga 78
|||| ||||||||||||| ||||||||||||| |||||||||||||||||||||||||||
Sbjct: 25 cttcatggtatttgaagatgcggttgaccatgctgtgtacgctttatttatgacgtagga 84
Query: 79 cacatggtctacttcttctcgatatcacatct 110
|||||||||||||||| ||| |||||||||||
Sbjct: 85 cacatggtctacttctcctcaatatcacatct 116
