miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>26622_cfa-mir-10b:mirbase
Length = 101
Score = 159 bits (80), Expect = 4e-40
Identities = 80/80 (100%)
Strand = Plus / Plus
Query: 1 gtctatatataccctgtagaaccgaatttgtgtggtatccacatagtcacagattcgatt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9 gtctatatataccctgtagaaccgaatttgtgtggtatccacatagtcacagattcgatt 68
Query: 61 ctaggggaatatatggtcga 80
||||||||||||||||||||
Sbjct: 69 ctaggggaatatatggtcga 88
>27649_mml-mir-10b:mirbase
Length = 110
Score = 151 bits (76), Expect = 9e-38
Identities = 79/80 (98%)
Strand = Plus / Plus
Query: 1 gtctatatataccctgtagaaccgaatttgtgtggtatccacatagtcacagattcgatt 60
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 18 gtctatatataccctgtagaaccgaatttgtgtggtatccatatagtcacagattcgatt 77
Query: 61 ctaggggaatatatggtcga 80
||||||||||||||||||||
Sbjct: 78 ctaggggaatatatggtcga 97
>28169_mne-mir-10b:mirbase
Length = 109
Score = 151 bits (76), Expect = 9e-38
Identities = 79/80 (98%)
Strand = Plus / Plus
Query: 1 gtctatatataccctgtagaaccgaatttgtgtggtatccacatagtcacagattcgatt 60
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 17 gtctatatataccctgtagaaccgaatttgtgtggtatccatatagtcacagattcgatt 76
Query: 61 ctaggggaatatatggtcga 80
||||||||||||||||||||
Sbjct: 77 ctaggggaatatatggtcga 96
>28257_ggo-mir-10b:mirbase
Length = 110
Score = 151 bits (76), Expect = 9e-38
Identities = 79/80 (98%)
Strand = Plus / Plus
Query: 1 gtctatatataccctgtagaaccgaatttgtgtggtatccacatagtcacagattcgatt 60
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 18 gtctatatataccctgtagaaccgaatttgtgtggtatccatatagtcacagattcgatt 77
Query: 61 ctaggggaatatatggtcga 80
||||||||||||||||||||
Sbjct: 78 ctaggggaatatatggtcga 97
>30750_ppy-mir-10b:mirbase
Length = 110
Score = 151 bits (76), Expect = 9e-38
Identities = 79/80 (98%)
Strand = Plus / Plus
Query: 1 gtctatatataccctgtagaaccgaatttgtgtggtatccacatagtcacagattcgatt 60
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 18 gtctatatataccctgtagaaccgaatttgtgtggtatccatatagtcacagattcgatt 77
Query: 61 ctaggggaatatatggtcga 80
||||||||||||||||||||
Sbjct: 78 ctaggggaatatatggtcga 97
>31424_oan-mir-10b:mirbase
Length = 107
Score = 151 bits (76), Expect = 9e-38
Identities = 79/80 (98%)
Strand = Plus / Plus
Query: 1 gtctatatataccctgtagaaccgaatttgtgtggtatccacatagtcacagattcgatt 60
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 16 gtctatatataccctgtagaaccgaatttgtgtggtattcacatagtcacagattcgatt 75
Query: 61 ctaggggaatatatggtcga 80
||||||||||||||||||||
Sbjct: 76 ctaggggaatatatggtcga 95
>32657_rno-mir-10b:mirbase
Length = 109
Score = 151 bits (76), Expect = 9e-38
Identities = 79/80 (98%)
Strand = Plus / Plus
Query: 1 gtctatatataccctgtagaaccgaatttgtgtggtatccacatagtcacagattcgatt 60
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 17 gtctatatataccctgtagaaccgaatttgtgtggtacccacatagtcacagattcgatt 76
Query: 61 ctaggggaatatatggtcga 80
||||||||||||||||||||
Sbjct: 77 ctaggggaatatatggtcga 96
>27332_mdo-mir-10b:mirbase
Length = 111
Score = 143 bits (72), Expect = 2e-35
Identities = 78/80 (97%)
Strand = Plus / Plus
Query: 1 gtctatatataccctgtagaaccgaatttgtgtggtatccacatagtcacagattcgatt 60
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 18 gtctatatataccctgtagaaccgaatttgtgtggtatttacatagtcacagattcgatt 77
Query: 61 ctaggggaatatatggtcga 80
||||||||||||||||||||
Sbjct: 78 ctaggggaatatatggtcga 97
>28359_hsa-mir-10b:mirbase
Length = 110
Score = 143 bits (72), Expect = 2e-35
Identities = 78/80 (97%)
Strand = Plus / Plus
Query: 1 gtctatatataccctgtagaaccgaatttgtgtggtatccacatagtcacagattcgatt 60
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 18 gtctatatataccctgtagaaccgaatttgtgtggtatccgtatagtcacagattcgatt 77
Query: 61 ctaggggaatatatggtcga 80
||||||||||||||||||||
Sbjct: 78 ctaggggaatatatggtcga 97
>30041_ppa-mir-10b:mirbase
Length = 110
Score = 143 bits (72), Expect = 2e-35
Identities = 78/80 (97%)
Strand = Plus / Plus
Query: 1 gtctatatataccctgtagaaccgaatttgtgtggtatccacatagtcacagattcgatt 60
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 18 gtctatatataccctgtagaaccgaatttgtgtggtatccgtatagtcacagattcgatt 77
Query: 61 ctaggggaatatatggtcga 80
||||||||||||||||||||
Sbjct: 78 ctaggggaatatatggtcga 97
>30145_ptr-mir-10b:mirbase
Length = 109
Score = 143 bits (72), Expect = 2e-35
Identities = 78/80 (97%)
Strand = Plus / Plus
Query: 1 gtctatatataccctgtagaaccgaatttgtgtggtatccacatagtcacagattcgatt 60
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 17 gtctatatataccctgtagaaccgaatttgtgtggtatccgtatagtcacagattcgatt 76
Query: 61 ctaggggaatatatggtcga 80
||||||||||||||||||||
Sbjct: 77 ctaggggaatatatggtcga 96
>33127_bta-mir-10b:mirbase
Length = 99
Score = 143 bits (72), Expect = 2e-35
Identities = 78/80 (97%)
Strand = Plus / Plus
Query: 1 gtctatatataccctgtagaaccgaatttgtgtggtatccacatagtcacagattcgatt 60
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 11 gtctatatataccctgtagaaccgaatttgtgtggtatccatgtagtcacagattcgatt 70
Query: 61 ctaggggaatatatggtcga 80
||||||||||||||||||||
Sbjct: 71 ctaggggaatatatggtcga 90
>25890_gga-mir-10b:mirbase
Length = 110
Score = 135 bits (68), Expect = 5e-33
Identities = 77/80 (96%)
Strand = Plus / Plus
Query: 1 gtctatatataccctgtagaaccgaatttgtgtggtatccacatagtcacagattcgatt 60
|||||||||||||||||||||||||||||||||| ||| || ||||||||||||||||||
Sbjct: 18 gtctatatataccctgtagaaccgaatttgtgtgatattcatatagtcacagattcgatt 77
Query: 61 ctaggggaatatatggtcga 80
||||||||||||||||||||
Sbjct: 78 ctaggggaatatatggtcga 97
>26944_eca-mir-10b:mirbase
Length = 68
Score = 135 bits (68), Expect = 5e-33
Identities = 68/68 (100%)
Strand = Plus / Plus
Query: 6 tatataccctgtagaaccgaatttgtgtggtatccacatagtcacagattcgattctagg 65
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 tatataccctgtagaaccgaatttgtgtggtatccacatagtcacagattcgattctagg 60
Query: 66 ggaatata 73
||||||||
Sbjct: 61 ggaatata 68
>31774_mmu-mir-10b:mirbase
Length = 68
Score = 127 bits (64), Expect = 1e-30
Identities = 67/68 (98%)
Strand = Plus / Plus
Query: 6 tatataccctgtagaaccgaatttgtgtggtatccacatagtcacagattcgattctagg 65
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 1 tatataccctgtagaaccgaatttgtgtggtacccacatagtcacagattcgattctagg 60
Query: 66 ggaatata 73
||||||||
Sbjct: 61 ggaatata 68
>25695_xtr-mir-10b:mirbase
Length = 88
Score = 89.7 bits (45), Expect = 3e-19
Identities = 72/80 (90%), Gaps = 2/80 (2%)
Strand = Plus / Plus
Query: 1 gtctatatataccctgtagaaccgaatttgtgtggtatccacatagtcacagattcgatt 60
|||||||| |||||||||||||||||||||||||| | | | ||||||||||||||||
Sbjct: 7 gtctatatgtaccctgtagaaccgaatttgtgtgg--ttcgtacagtcacagattcgatt 64
Query: 61 ctaggggaatatatggtcga 80
||||||| ||||||||||||
Sbjct: 65 ctagggggatatatggtcga 84
>34541_fru-mir-10b-1:mirbase
Length = 70
Score = 83.8 bits (42), Expect = 2e-17
Identities = 63/70 (90%)
Strand = Plus / Plus
Query: 5 atatataccctgtagaaccgaatttgtgtggtatccacatagtcacagattcgattctag 64
|||||||||||||||||||||||||||||| | | || ||||||||||||||||||||
Sbjct: 1 atatataccctgtagaaccgaatttgtgtgatggcgtcaaagtcacagattcgattctag 60
Query: 65 gggaatatat 74
|||| |||||
Sbjct: 61 gggagtatat 70
>34198_dre-mir-10b-1:mirbase
Length = 78
Score = 75.8 bits (38), Expect = 4e-15
Identities = 68/78 (87%)
Strand = Plus / Plus
Query: 1 gtctatatataccctgtagaaccgaatttgtgtggtatccacatagtcacagattcgatt 60
|||||||||||||||||||||||||||||||||| | | | ||||||||||||||
Sbjct: 1 gtctatatataccctgtagaaccgaatttgtgtgaaaaaataacattcacagattcgatt 60
Query: 61 ctaggggaatatatggtc 78
|||||||| |||||||||
Sbjct: 61 ctaggggagtatatggtc 78
>34690_tni-mir-10b-2:mirbase
Length = 70
Score = 75.8 bits (38), Expect = 4e-15
Identities = 62/70 (88%)
Strand = Plus / Plus
Query: 5 atatataccctgtagaaccgaatttgtgtggtatccacatagtcacagattcgattctag 64
|||||||||||||||||||||||||||||| | || ||||||||||||||||||||
Sbjct: 1 atatataccctgtagaaccgaatttgtgtgatcaagtcacagtcacagattcgattctag 60
Query: 65 gggaatatat 74
|||| |||||
Sbjct: 61 gggagtatat 70
>34542_fru-mir-10b-2:mirbase
Length = 84
Score = 60.0 bits (30), Expect = 2e-10
Identities = 33/34 (97%)
Strand = Plus / Plus
Query: 1 gtctatatataccctgtagaaccgaatttgtgtg 34
|||||||| |||||||||||||||||||||||||
Sbjct: 4 gtctatatgtaccctgtagaaccgaatttgtgtg 37
>34689_tni-mir-10b-1:mirbase
Length = 83
Score = 60.0 bits (30), Expect = 2e-10
Identities = 33/34 (97%)
Strand = Plus / Plus
Query: 1 gtctatatataccctgtagaaccgaatttgtgtg 34
|||||||| |||||||||||||||||||||||||
Sbjct: 4 gtctatatgtaccctgtagaaccgaatttgtgtg 37
>34197_dre-mir-10a:mirbase
Length = 99
Score = 58.0 bits (29), Expect = 1e-09
Identities = 32/33 (96%)
Strand = Plus / Plus
Query: 2 tctatatataccctgtagaaccgaatttgtgtg 34
||||||||||||||||||| |||||||||||||
Sbjct: 10 tctatatataccctgtagatccgaatttgtgtg 42
>34199_dre-mir-10b-2:mirbase
Length = 92
Score = 58.0 bits (29), Expect = 1e-09
Identities = 32/33 (96%)
Strand = Plus / Plus
Query: 1 gtctatatataccctgtagaaccgaatttgtgt 33
|||||||| ||||||||||||||||||||||||
Sbjct: 7 gtctatatgtaccctgtagaaccgaatttgtgt 39
>34201_dre-mir-10d:mirbase
Length = 118
Score = 58.0 bits (29), Expect = 1e-09
Identities = 32/33 (96%)
Strand = Plus / Plus
Query: 1 gtctatatataccctgtagaaccgaatttgtgt 33
||||||||||||||||||||||||||| |||||
Sbjct: 19 gtctatatataccctgtagaaccgaatgtgtgt 51
>34544_fru-mir-10d:mirbase
Length = 112
Score = 52.0 bits (26), Expect = 6e-08
Identities = 32/34 (94%)
Strand = Plus / Plus
Query: 1 gtctatatataccctgtagaaccgaatttgtgtg 34
||||||| ||||||||||||||||||| ||||||
Sbjct: 19 gtctataaataccctgtagaaccgaatgtgtgtg 52
>34692_tni-mir-10d:mirbase
Length = 120
Score = 52.0 bits (26), Expect = 6e-08
Identities = 32/34 (94%)
Strand = Plus / Plus
Query: 1 gtctatatataccctgtagaaccgaatttgtgtg 34
||||||| ||||||||||||||||||| ||||||
Sbjct: 19 gtctatacataccctgtagaaccgaatgtgtgtg 52
>24650_bfl-mir-10a:mirbase
Length = 76
Score = 48.1 bits (24), Expect = 9e-07
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 3 ctatatataccctgtagaaccgaatttgtgtg 34
|||||| ||||||||||| |||||||||||||
Sbjct: 1 ctatatgtaccctgtagatccgaatttgtgtg 32
>26943_eca-mir-10a:mirbase
Length = 110
Score = 48.1 bits (24), Expect = 9e-07
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 6 tatataccctgtagaaccgaatttgtgt 33
||||||||||||||| ||||||||||||
Sbjct: 18 tatataccctgtagatccgaatttgtgt 45
>27331_mdo-mir-10a:mirbase
Length = 90
Score = 48.1 bits (24), Expect = 9e-07
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 6 tatataccctgtagaaccgaatttgtgt 33
||||||||||||||| ||||||||||||
Sbjct: 11 tatataccctgtagatccgaatttgtgt 38
>27477_age-mir-10a:mirbase
Length = 110
Score = 48.1 bits (24), Expect = 9e-07
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 6 tatataccctgtagaaccgaatttgtgt 33
||||||||||||||| ||||||||||||
Sbjct: 18 tatataccctgtagatccgaatttgtgt 45
>27587_sla-mir-10a:mirbase
Length = 110
Score = 48.1 bits (24), Expect = 9e-07
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 6 tatataccctgtagaaccgaatttgtgt 33
||||||||||||||| ||||||||||||
Sbjct: 18 tatataccctgtagatccgaatttgtgt 45
>27648_mml-mir-10a:mirbase
Length = 109
Score = 48.1 bits (24), Expect = 9e-07
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 6 tatataccctgtagaaccgaatttgtgt 33
||||||||||||||| ||||||||||||
Sbjct: 18 tatataccctgtagatccgaatttgtgt 45
>28256_ggo-mir-10a:mirbase
Length = 110
Score = 48.1 bits (24), Expect = 9e-07
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 6 tatataccctgtagaaccgaatttgtgt 33
||||||||||||||| ||||||||||||
Sbjct: 18 tatataccctgtagatccgaatttgtgt 45
>28358_hsa-mir-10a:mirbase
Length = 110
Score = 48.1 bits (24), Expect = 9e-07
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 6 tatataccctgtagaaccgaatttgtgt 33
||||||||||||||| ||||||||||||
Sbjct: 18 tatataccctgtagatccgaatttgtgt 45
>30040_ppa-mir-10a:mirbase
Length = 110
Score = 48.1 bits (24), Expect = 9e-07
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 6 tatataccctgtagaaccgaatttgtgt 33
||||||||||||||| ||||||||||||
Sbjct: 18 tatataccctgtagatccgaatttgtgt 45
>30144_ptr-mir-10a:mirbase
Length = 109
Score = 48.1 bits (24), Expect = 9e-07
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 6 tatataccctgtagaaccgaatttgtgt 33
||||||||||||||| ||||||||||||
Sbjct: 17 tatataccctgtagatccgaatttgtgt 44
>31423_oan-mir-10a:mirbase
Length = 122
Score = 48.1 bits (24), Expect = 9e-07
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 6 tatataccctgtagaaccgaatttgtgt 33
||||||||||||||| ||||||||||||
Sbjct: 24 tatataccctgtagatccgaatttgtgt 51
>31773_mmu-mir-10a:mirbase
Length = 110
Score = 48.1 bits (24), Expect = 9e-07
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 6 tatataccctgtagaaccgaatttgtgt 33
||||||||||||||| ||||||||||||
Sbjct: 18 tatataccctgtagatccgaatttgtgt 45
>32655_rno-mir-10a:mirbase
Length = 110
Score = 48.1 bits (24), Expect = 9e-07
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 6 tatataccctgtagaaccgaatttgtgt 33
||||||||||||||| ||||||||||||
Sbjct: 18 tatataccctgtagatccgaatttgtgt 45
>32656_rno-mir-10a:mirbase
Length = 110
Score = 48.1 bits (24), Expect = 9e-07
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 6 tatataccctgtagaaccgaatttgtgt 33
||||||||||||||| ||||||||||||
Sbjct: 18 tatataccctgtagatccgaatttgtgt 45
>33126_bta-mir-10a:mirbase
Length = 109
Score = 48.1 bits (24), Expect = 9e-07
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 6 tatataccctgtagaaccgaatttgtgt 33
||||||||||||||| ||||||||||||
Sbjct: 18 tatataccctgtagatccgaatttgtgt 45
>33909_ssc-mir-10a:mirbase
Length = 80
Score = 48.1 bits (24), Expect = 9e-07
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 6 tatataccctgtagaaccgaatttgtgt 33
||||||||||||||| ||||||||||||
Sbjct: 5 tatataccctgtagatccgaatttgtgt 32
>34200_dre-mir-10c:mirbase
Length = 95
Score = 48.1 bits (24), Expect = 9e-07
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 2 tctatatataccctgtagaaccgaatttgtgt 33
||||||||||||||||||| ||| ||||||||
Sbjct: 8 tctatatataccctgtagatccggatttgtgt 39
>25889_gga-mir-10a:mirbase
Length = 74
Score = 46.1 bits (23), Expect = 4e-06
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 3 ctatatataccctgtagaaccgaatttgtgt 33
|||||| ||||||||||| ||||||||||||
Sbjct: 1 ctatatgtaccctgtagatccgaatttgtgt 31
>25694_xtr-mir-10a:mirbase
Length = 100
Score = 42.1 bits (21), Expect = 6e-05
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 10 taccctgtagaaccgaatttgtgtg 34
||||||||||| |||||||||||||
Sbjct: 22 taccctgtagatccgaatttgtgtg 46
>38853_lgi-mir-10:mirbase
Length = 101
Score = 40.1 bits (20), Expect = 2e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 10 taccctgtagaaccgaatttgtgt 33
||||||||||| ||||||||||||
Sbjct: 21 taccctgtagatccgaatttgtgt 44
>25696_xtr-mir-10c:mirbase
Length = 71
Score = 40.1 bits (20), Expect = 2e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 11 accctgtagaaccgaatttgtgtg 34
||||||||||| ||||||||||||
Sbjct: 8 accctgtagaatcgaatttgtgtg 31
>26621_cfa-mir-10:mirbase
Length = 63
Score = 40.1 bits (20), Expect = 2e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 10 taccctgtagaaccgaatttgtgt 33
||||||||||| ||||||||||||
Sbjct: 1 taccctgtagatccgaatttgtgt 24
>30749_ppy-mir-10a:mirbase
Length = 110
Score = 40.1 bits (20), Expect = 2e-04
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 6 tatataccctgtagaaccgaatttgtgt 33
||||||||| ||||| ||||||||||||
Sbjct: 18 tatataccccgtagatccgaatttgtgt 45
>34543_fru-mir-10c:mirbase
Length = 102
Score = 40.1 bits (20), Expect = 2e-04
Identities = 29/32 (90%)
Strand = Plus / Plus
Query: 2 tctatatataccctgtagaaccgaatttgtgt 33
||||||| ||||||||||| ||| ||||||||
Sbjct: 7 tctatatctaccctgtagatccggatttgtgt 38
>34691_tni-mir-10c:mirbase
Length = 108
Score = 40.1 bits (20), Expect = 2e-04
Identities = 29/32 (90%)
Strand = Plus / Plus
Query: 2 tctatatataccctgtagaaccgaatttgtgt 33
||||||| ||||||||||| ||| ||||||||
Sbjct: 13 tctatatctaccctgtagatccggatttgtgt 44
>34809_spu-mir-10:mirbase
Length = 110
Score = 38.2 bits (19), Expect = 9e-04
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 11 accctgtagaaccgaatttgtgt 33
|||||||||| ||||||||||||
Sbjct: 27 accctgtagatccgaatttgtgt 49
>34866_sko-mir-10:mirbase
Length = 101
Score = 38.2 bits (19), Expect = 9e-04
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 10 taccctgtagaaccgaatttgtg 32
||||||||||| |||||||||||
Sbjct: 20 taccctgtagatccgaatttgtg 42
