miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>26947_eca-mir-16:mirbase
Length = 81
Score = 145 bits (73), Expect = 5e-36
Identities = 76/77 (98%)
Strand = Plus / Plus
Query: 1 tccgctctagcagcacgtaaatattggcgtagtaaaataaatattaaacaccaatattat 60
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 3 tccgctctagcagcacgtaaatattggcgtagtgaaataaatattaaacaccaatattat 62
Query: 61 tgtgctgctttagcgtg 77
|||||||||||||||||
Sbjct: 63 tgtgctgctttagcgtg 79
>33131_bta-mir-16b:mirbase
Length = 93
Score = 145 bits (73), Expect = 5e-36
Identities = 76/77 (98%)
Strand = Plus / Plus
Query: 1 tccgctctagcagcacgtaaatattggcgtagtaaaataaatattaaacaccaatattat 60
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10 tccgctgtagcagcacgtaaatattggcgtagtaaaataaatattaaacaccaatattat 69
Query: 61 tgtgctgctttagcgtg 77
|||||||||||||||||
Sbjct: 70 tgtgctgctttagcgtg 86
>32659_rno-mir-16:mirbase
Length = 95
Score = 137 bits (69), Expect = 1e-33
Identities = 72/73 (98%)
Strand = Plus / Plus
Query: 1 tccgctctagcagcacgtaaatattggcgtagtaaaataaatattaaacaccaatattat 60
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 10 tccgctctagcagcacgtaaatattggcgtagtgaaataaatattaaacaccaatattat 69
Query: 61 tgtgctgctttag 73
|||||||||||||
Sbjct: 70 tgtgctgctttag 82
>31778_mmu-mir-16-2:mirbase
Length = 95
Score = 129 bits (65), Expect = 3e-31
Identities = 68/69 (98%)
Strand = Plus / Plus
Query: 5 ctctagcagcacgtaaatattggcgtagtaaaataaatattaaacaccaatattattgtg 64
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 14 ctctagcagcacgtaaatattggcgtagtgaaataaatattaaacaccaatattattgtg 73
Query: 65 ctgctttag 73
|||||||||
Sbjct: 74 ctgctttag 82
>26626_cfa-mir-16-2:mirbase
Length = 65
Score = 113 bits (57), Expect = 2e-26
Identities = 63/65 (96%)
Strand = Plus / Plus
Query: 8 tagcagcacgtaaatattggcgtagtaaaataaatattaaacaccaatattattgtgctg 67
|||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||
Sbjct: 1 tagcagcacgtaaatattggcgtagtgaaataaaaattaaacaccaatattattgtgctg 60
Query: 68 cttta 72
|||||
Sbjct: 61 cttta 65
>28363_hsa-mir-16-2:mirbase
Length = 81
Score = 113 bits (57), Expect = 2e-26
Identities = 66/69 (95%)
Strand = Plus / Plus
Query: 5 ctctagcagcacgtaaatattggcgtagtaaaataaatattaaacaccaatattattgtg 64
||||||||||||||||||||||||||||| ||||| ||||||||||||||||||| ||||
Sbjct: 7 ctctagcagcacgtaaatattggcgtagtgaaatatatattaaacaccaatattactgtg 66
Query: 65 ctgctttag 73
|||||||||
Sbjct: 67 ctgctttag 75
>25895_gga-mir-16-2:mirbase
Length = 94
Score = 105 bits (53), Expect = 4e-24
Identities = 71/77 (92%)
Strand = Plus / Plus
Query: 1 tccgctctagcagcacgtaaatattggcgtagtaaaataaatattaaacaccaatattat 60
||||| ||||||||||||||||||||| ||||||||||||| |||||| ||||||||||
Sbjct: 10 tccgccctagcagcacgtaaatattggtgtagtaaaataaaccttaaaccccaatattat 69
Query: 61 tgtgctgctttagcgtg 77
|||||||||| ||||||
Sbjct: 70 tgtgctgcttaagcgtg 86
>30149_ptr-mir-16-2:mirbase
Length = 80
Score = 105 bits (53), Expect = 4e-24
Identities = 65/69 (94%)
Strand = Plus / Plus
Query: 5 ctctagcagcacgtaaatattggcgtagtaaaataaatattaaacaccaatattattgtg 64
||||||||||||||||||||||||||||| ||||| || |||||||||||||||| ||||
Sbjct: 6 ctctagcagcacgtaaatattggcgtagtgaaatatatgttaaacaccaatattactgtg 65
Query: 65 ctgctttag 73
|||||||||
Sbjct: 66 ctgctttag 74
>27653_mml-mir-16-2:mirbase
Length = 81
Score = 99.6 bits (50), Expect = 3e-22
Identities = 62/66 (93%)
Strand = Plus / Plus
Query: 5 ctctagcagcacgtaaatattggcgtagtaaaataaatattaaacaccaatattattgtg 64
||||||||||||||||||||||||||||| ||||| |||||||||||||||||| ||||
Sbjct: 7 ctctagcagcacgtaaatattggcgtagtgaaatatgtattaaacaccaatattactgtg 66
Query: 65 ctgctt 70
||||||
Sbjct: 67 ctgctt 72
>30754_ppy-mir-16-2:mirbase
Length = 82
Score = 99.6 bits (50), Expect = 3e-22
Identities = 66/70 (94%), Gaps = 1/70 (1%)
Strand = Plus / Plus
Query: 5 ctctagcagcacgtaaatattgg-cgtagtaaaataaatattaaacaccaatattattgt 63
||||||||||||||||||||||| |||||| ||||| ||||||||||||||||||| |||
Sbjct: 7 ctctagcagcacgtaaatattgggcgtagtgaaatatatattaaacaccaatattactgt 66
Query: 64 gctgctttag 73
||||||||||
Sbjct: 67 gctgctttag 76
>31429_oan-mir-16b:mirbase
Length = 101
Score = 75.8 bits (38), Expect = 4e-15
Identities = 66/75 (88%), Gaps = 4/75 (5%)
Strand = Plus / Plus
Query: 3 cgctctagcagcacgtaaatattggcgtagtaaaataaatattaaacaccaatattattg 62
||||||||||||||||||||||||| ||||| || | |||||| ||||||||||||
Sbjct: 16 cgctctagcagcacgtaaatattggtgtagtgaagtc----ttaaaccccaatattattg 71
Query: 63 tgctgctttagcgtg 77
|||||||||||||||
Sbjct: 72 tgctgctttagcgtg 86
>26400_tgu-mir-16b:mirbase
Length = 72
Score = 60.0 bits (30), Expect = 2e-10
Identities = 61/70 (87%), Gaps = 1/70 (1%)
Strand = Plus / Plus
Query: 1 tccgctctagcagcacgtaaatattggcgtagtaaaataaatattaaacaccaatattat 60
||||| ||||||||||||||||||||| || || ||| ||| || ||| ||||||||||
Sbjct: 4 tccgccctagcagcacgtaaatattggagt-gtcaaagaaaccttcaaccccaatattat 62
Query: 61 tgtgctgctt 70
||||||||||
Sbjct: 63 tgtgctgctt 72
>25894_gga-mir-16-1:mirbase
Length = 84
Score = 46.1 bits (23), Expect = 3e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 5 ctctagcagcacgtaaatattgg 27
|||||||||||||||||||||||
Sbjct: 11 ctctagcagcacgtaaatattgg 33
>26625_cfa-mir-16-1:mirbase
Length = 65
Score = 46.1 bits (23), Expect = 3e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 8 tagcagcacgtaaatattggcgt 30
|||||||||||||||||||||||
Sbjct: 1 tagcagcacgtaaatattggcgt 23
>26948_eca-mir-16-2:mirbase
Length = 63
Score = 46.1 bits (23), Expect = 3e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 8 tagcagcacgtaaatattggcgt 30
|||||||||||||||||||||||
Sbjct: 1 tagcagcacgtaaatattggcgt 23
>27334_mdo-mir-16:mirbase
Length = 90
Score = 46.1 bits (23), Expect = 3e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 8 tagcagcacgtaaatattggcgt 30
|||||||||||||||||||||||
Sbjct: 14 tagcagcacgtaaatattggcgt 36
>27480_age-mir-16:mirbase
Length = 89
Score = 46.1 bits (23), Expect = 3e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 8 tagcagcacgtaaatattggcgt 30
|||||||||||||||||||||||
Sbjct: 14 tagcagcacgtaaatattggcgt 36
>27589_sla-mir-16:mirbase
Length = 89
Score = 46.1 bits (23), Expect = 3e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 8 tagcagcacgtaaatattggcgt 30
|||||||||||||||||||||||
Sbjct: 14 tagcagcacgtaaatattggcgt 36
>27652_mml-mir-16-1:mirbase
Length = 89
Score = 46.1 bits (23), Expect = 3e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 8 tagcagcacgtaaatattggcgt 30
|||||||||||||||||||||||
Sbjct: 14 tagcagcacgtaaatattggcgt 36
>28172_mne-mir-16:mirbase
Length = 89
Score = 46.1 bits (23), Expect = 3e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 8 tagcagcacgtaaatattggcgt 30
|||||||||||||||||||||||
Sbjct: 14 tagcagcacgtaaatattggcgt 36
>28260_ggo-mir-16:mirbase
Length = 89
Score = 46.1 bits (23), Expect = 3e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 8 tagcagcacgtaaatattggcgt 30
|||||||||||||||||||||||
Sbjct: 14 tagcagcacgtaaatattggcgt 36
>28362_hsa-mir-16-1:mirbase
Length = 89
Score = 46.1 bits (23), Expect = 3e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 8 tagcagcacgtaaatattggcgt 30
|||||||||||||||||||||||
Sbjct: 14 tagcagcacgtaaatattggcgt 36
>30044_ppa-mir-16:mirbase
Length = 89
Score = 46.1 bits (23), Expect = 3e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 8 tagcagcacgtaaatattggcgt 30
|||||||||||||||||||||||
Sbjct: 14 tagcagcacgtaaatattggcgt 36
>30148_ptr-mir-16-1:mirbase
Length = 89
Score = 46.1 bits (23), Expect = 3e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 8 tagcagcacgtaaatattggcgt 30
|||||||||||||||||||||||
Sbjct: 14 tagcagcacgtaaatattggcgt 36
>30753_ppy-mir-16:mirbase
Length = 89
Score = 46.1 bits (23), Expect = 3e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 8 tagcagcacgtaaatattggcgt 30
|||||||||||||||||||||||
Sbjct: 14 tagcagcacgtaaatattggcgt 36
>31428_oan-mir-16a:mirbase
Length = 132
Score = 46.1 bits (23), Expect = 3e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 8 tagcagcacgtaaatattggcgt 30
|||||||||||||||||||||||
Sbjct: 29 tagcagcacgtaaatattggcgt 51
>31777_mmu-mir-16-1:mirbase
Length = 93
Score = 46.1 bits (23), Expect = 3e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 8 tagcagcacgtaaatattggcgt 30
|||||||||||||||||||||||
Sbjct: 16 tagcagcacgtaaatattggcgt 38
>33914_ssc-mir-16-2:mirbase
Length = 79
Score = 46.1 bits (23), Expect = 3e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 8 tagcagcacgtaaatattggcgt 30
|||||||||||||||||||||||
Sbjct: 9 tagcagcacgtaaatattggcgt 31
>27541_lla-mir-16:mirbase
Length = 89
Score = 44.1 bits (22), Expect = 1e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 8 tagcagcacgtaaatattggcg 29
||||||||||||||||||||||
Sbjct: 14 tagcagcacgtaaatattggcg 35
>34206_dre-mir-16a:mirbase
Length = 87
Score = 42.1 bits (21), Expect = 5e-05
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 3 cgctctagcagcacgtaaatattgg 27
|||| ||||||||||||||||||||
Sbjct: 8 cgctttagcagcacgtaaatattgg 32
>25429_pma-mir-16:mirbase
Length = 75
Score = 40.1 bits (20), Expect = 2e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 8 tagcagcacgtaaatattgg 27
||||||||||||||||||||
Sbjct: 10 tagcagcacgtaaatattgg 29
>25700_xtr-mir-16a:mirbase
Length = 82
Score = 40.1 bits (20), Expect = 2e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 8 tagcagcacgtaaatattgg 27
||||||||||||||||||||
Sbjct: 14 tagcagcacgtaaatattgg 33
>25701_xtr-mir-16b:mirbase
Length = 84
Score = 40.1 bits (20), Expect = 2e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 8 tagcagcacgtaaatattgg 27
||||||||||||||||||||
Sbjct: 14 tagcagcacgtaaatattgg 33
>25896_gga-mir-16c:mirbase
Length = 71
Score = 40.1 bits (20), Expect = 2e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 4 gctctagcagcacgtaaata 23
||||||||||||||||||||
Sbjct: 1 gctctagcagcacgtaaata 20
>26399_tgu-mir-16a:mirbase
Length = 92
Score = 40.1 bits (20), Expect = 2e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 8 tagcagcacgtaaatattgg 27
||||||||||||||||||||
Sbjct: 11 tagcagcacgtaaatattgg 30
>26401_tgu-mir-16c:mirbase
Length = 72
Score = 40.1 bits (20), Expect = 2e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 4 gctctagcagcacgtaaata 23
||||||||||||||||||||
Sbjct: 7 gctctagcagcacgtaaata 26
>31394_lca-mir-16:mirbase
Length = 74
Score = 40.1 bits (20), Expect = 2e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 8 tagcagcacgtaaatattgg 27
||||||||||||||||||||
Sbjct: 14 tagcagcacgtaaatattgg 33
>33130_bta-mir-16a:mirbase
Length = 89
Score = 40.1 bits (20), Expect = 2e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 8 tagcagcacgtaaatattgg 27
||||||||||||||||||||
Sbjct: 14 tagcagcacgtaaatattgg 33
>34207_dre-mir-16b:mirbase
Length = 140
Score = 40.1 bits (20), Expect = 2e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 8 tagcagcacgtaaatattgg 27
||||||||||||||||||||
Sbjct: 39 tagcagcacgtaaatattgg 58
>34547_fru-mir-16:mirbase
Length = 89
Score = 40.1 bits (20), Expect = 2e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 8 tagcagcacgtaaatattgg 27
||||||||||||||||||||
Sbjct: 13 tagcagcacgtaaatattgg 32
>34695_tni-mir-16:mirbase
Length = 72
Score = 40.1 bits (20), Expect = 2e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 8 tagcagcacgtaaatattgg 27
||||||||||||||||||||
Sbjct: 1 tagcagcacgtaaatattgg 20
