miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>33144_bta-mir-23a:mirbase
Length = 73
Score = 131 bits (66), Expect = 7e-32
Identities = 69/70 (98%)
Strand = Plus / Plus
Query: 1 cggctggggttcctggggatgggatttgctgcctgtcacaaatcacattgccagggattt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4 cggctggggttcctggggatgggatttgctgcctgtcacaaatcacattgccagggattt 63
Query: 61 ccaatcgacc 70
|||| |||||
Sbjct: 64 ccaaccgacc 73
>26959_eca-mir-23a:mirbase
Length = 73
Score = 123 bits (62), Expect = 2e-29
Identities = 68/70 (97%)
Strand = Plus / Plus
Query: 1 cggctggggttcctggggatgggatttgctgcctgtcacaaatcacattgccagggattt 60
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 4 cggctggggttcctggggatgggatttgctgcttgtcacaaatcacattgccagggattt 63
Query: 61 ccaatcgacc 70
|||| |||||
Sbjct: 64 ccaaccgacc 73
>27490_age-mir-23a:mirbase
Length = 73
Score = 123 bits (62), Expect = 2e-29
Identities = 68/70 (97%)
Strand = Plus / Plus
Query: 1 cggctggggttcctggggatgggatttgctgcctgtcacaaatcacattgccagggattt 60
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 4 cggctggggttcctggggatgggatttgctgcctatcacaaatcacattgccagggattt 63
Query: 61 ccaatcgacc 70
|||| |||||
Sbjct: 64 ccaaccgacc 73
>27598_sla-mir-23a:mirbase
Length = 73
Score = 123 bits (62), Expect = 2e-29
Identities = 68/70 (97%)
Strand = Plus / Plus
Query: 1 cggctggggttcctggggatgggatttgctgcctgtcacaaatcacattgccagggattt 60
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 4 cggctggggttcctggggatgggatttgctgcctatcacaaatcacattgccagggattt 63
Query: 61 ccaatcgacc 70
|||| |||||
Sbjct: 64 ccaaccgacc 73
>27665_mml-mir-23a:mirbase
Length = 73
Score = 123 bits (62), Expect = 2e-29
Identities = 68/70 (97%)
Strand = Plus / Plus
Query: 1 cggctggggttcctggggatgggatttgctgcctgtcacaaatcacattgccagggattt 60
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 4 cggctggggttcctggggatgggatttgcttcctgtcacaaatcacattgccagggattt 63
Query: 61 ccaatcgacc 70
|||| |||||
Sbjct: 64 ccaaccgacc 73
>28182_mne-mir-23a:mirbase
Length = 73
Score = 123 bits (62), Expect = 2e-29
Identities = 68/70 (97%)
Strand = Plus / Plus
Query: 1 cggctggggttcctggggatgggatttgctgcctgtcacaaatcacattgccagggattt 60
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 4 cggctggggttcctggggatgggatttgcttcctgtcacaaatcacattgccagggattt 63
Query: 61 ccaatcgacc 70
|||| |||||
Sbjct: 64 ccaaccgacc 73
>28269_ggo-mir-23a:mirbase
Length = 73
Score = 123 bits (62), Expect = 2e-29
Identities = 68/70 (97%)
Strand = Plus / Plus
Query: 1 cggctggggttcctggggatgggatttgctgcctgtcacaaatcacattgccagggattt 60
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 4 cggctggggttcctggggatgggatttgcttcctgtcacaaatcacattgccagggattt 63
Query: 61 ccaatcgacc 70
|||| |||||
Sbjct: 64 ccaaccgacc 73
>28374_hsa-mir-23a:mirbase
Length = 73
Score = 123 bits (62), Expect = 2e-29
Identities = 68/70 (97%)
Strand = Plus / Plus
Query: 1 cggctggggttcctggggatgggatttgctgcctgtcacaaatcacattgccagggattt 60
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 4 cggctggggttcctggggatgggatttgcttcctgtcacaaatcacattgccagggattt 63
Query: 61 ccaatcgacc 70
|||| |||||
Sbjct: 64 ccaaccgacc 73
>30054_ppa-mir-23a:mirbase
Length = 73
Score = 123 bits (62), Expect = 2e-29
Identities = 68/70 (97%)
Strand = Plus / Plus
Query: 1 cggctggggttcctggggatgggatttgctgcctgtcacaaatcacattgccagggattt 60
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 4 cggctggggttcctggggatgggatttgcttcctgtcacaaatcacattgccagggattt 63
Query: 61 ccaatcgacc 70
|||| |||||
Sbjct: 64 ccaaccgacc 73
>30161_ptr-mir-23a:mirbase
Length = 73
Score = 123 bits (62), Expect = 2e-29
Identities = 68/70 (97%)
Strand = Plus / Plus
Query: 1 cggctggggttcctggggatgggatttgctgcctgtcacaaatcacattgccagggattt 60
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 4 cggctggggttcctggggatgggatttgcttcctgtcacaaatcacattgccagggattt 63
Query: 61 ccaatcgacc 70
|||| |||||
Sbjct: 64 ccaaccgacc 73
>30766_ppy-mir-23a:mirbase
Length = 73
Score = 123 bits (62), Expect = 2e-29
Identities = 68/70 (97%)
Strand = Plus / Plus
Query: 1 cggctggggttcctggggatgggatttgctgcctgtcacaaatcacattgccagggattt 60
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 4 cggctggggttcctggggatgggatttgcttcctgtcacaaatcacattgccagggattt 63
Query: 61 ccaatcgacc 70
|||| |||||
Sbjct: 64 ccaaccgacc 73
>31403_lca-mir-23a:mirbase
Length = 73
Score = 115 bits (58), Expect = 4e-27
Identities = 67/70 (95%)
Strand = Plus / Plus
Query: 1 cggctggggttcctggggatgggatttgctgcctgtcacaaatcacattgccagggattt 60
|||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||
Sbjct: 4 cggctggggttcctggggatgggatttgctacctatcacaaatcacattgccagggattt 63
Query: 61 ccaatcgacc 70
|||| |||||
Sbjct: 64 ccaaccgacc 73
>31789_mmu-mir-23a:mirbase
Length = 75
Score = 111 bits (56), Expect = 6e-26
Identities = 62/64 (96%)
Strand = Plus / Plus
Query: 1 cggctggggttcctggggatgggatttgctgcctgtcacaaatcacattgccagggattt 60
|||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||
Sbjct: 5 cggctggggttcctggggatgggatttgatgccagtcacaaatcacattgccagggattt 64
Query: 61 ccaa 64
||||
Sbjct: 65 ccaa 68
>32673_rno-mir-23a:mirbase
Length = 75
Score = 111 bits (56), Expect = 6e-26
Identities = 62/64 (96%)
Strand = Plus / Plus
Query: 1 cggctggggttcctggggatgggatttgctgcctgtcacaaatcacattgccagggattt 60
|||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||
Sbjct: 5 cggctggggttcctggggatgggatttgatgccagtcacaaatcacattgccagggattt 64
Query: 61 ccaa 64
||||
Sbjct: 65 ccaa 68
>26637_cfa-mir-23a:mirbase
Length = 52
Score = 103 bits (52), Expect = 2e-23
Identities = 52/52 (100%)
Strand = Plus / Plus
Query: 9 gttcctggggatgggatttgctgcctgtcacaaatcacattgccagggattt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 gttcctggggatgggatttgctgcctgtcacaaatcacattgccagggattt 52
>27343_mdo-mir-23a:mirbase
Length = 73
Score = 95.6 bits (48), Expect = 4e-21
Identities = 60/64 (93%)
Strand = Plus / Plus
Query: 1 cggctggggttcctggggatgggatttgctgcctgtcacaaatcacattgccagggattt 60
|||||||||||||||||||||||||||| | ||| ||||||||||||||||||||||||
Sbjct: 1 cggctggggttcctggggatgggatttgattactgccacaaatcacattgccagggattt 60
Query: 61 ccaa 64
||||
Sbjct: 61 ccaa 64
>25714_xtr-mir-23a-2:mirbase
Length = 83
Score = 54.0 bits (27), Expect = 1e-08
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 40 aaatcacattgccagggatttccaatc 66
|||||||||||||||||||||||||||
Sbjct: 50 aaatcacattgccagggatttccaatc 76
>25659_xla-mir-23a:mirbase
Length = 78
Score = 50.1 bits (25), Expect = 2e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 40 aaatcacattgccagggatttccaa 64
|||||||||||||||||||||||||
Sbjct: 49 aaatcacattgccagggatttccaa 73
>25713_xtr-mir-23a-1:mirbase
Length = 78
Score = 50.1 bits (25), Expect = 2e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 40 aaatcacattgccagggatttccaa 64
|||||||||||||||||||||||||
Sbjct: 49 aaatcacattgccagggatttccaa 73
>31440_oan-mir-23a:mirbase
Length = 84
Score = 50.1 bits (25), Expect = 2e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 40 aaatcacattgccagggatttccaa 64
|||||||||||||||||||||||||
Sbjct: 51 aaatcacattgccagggatttccaa 75
>34225_dre-mir-23a-2:mirbase
Length = 98
Score = 50.1 bits (25), Expect = 2e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 41 aatcacattgccagggatttccaat 65
|||||||||||||||||||||||||
Sbjct: 56 aatcacattgccagggatttccaat 80
>34226_dre-mir-23a-3:mirbase
Length = 78
Score = 50.1 bits (25), Expect = 2e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 40 aaatcacattgccagggatttccaa 64
|||||||||||||||||||||||||
Sbjct: 46 aaatcacattgccagggatttccaa 70
>34558_fru-mir-23a-2:mirbase
Length = 77
Score = 50.1 bits (25), Expect = 2e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 40 aaatcacattgccagggatttccaa 64
|||||||||||||||||||||||||
Sbjct: 46 aaatcacattgccagggatttccaa 70
>34559_fru-mir-23a-3:mirbase
Length = 80
Score = 50.1 bits (25), Expect = 2e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 41 aatcacattgccagggatttccaat 65
|||||||||||||||||||||||||
Sbjct: 52 aatcacattgccagggatttccaat 76
>34706_tni-mir-23a-2:mirbase
Length = 76
Score = 50.1 bits (25), Expect = 2e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 40 aaatcacattgccagggatttccaa 64
|||||||||||||||||||||||||
Sbjct: 46 aaatcacattgccagggatttccaa 70
>34707_tni-mir-23a-3:mirbase
Length = 81
Score = 50.1 bits (25), Expect = 2e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 41 aatcacattgccagggatttccaat 65
|||||||||||||||||||||||||
Sbjct: 53 aatcacattgccagggatttccaat 77
>34224_dre-mir-23a-1:mirbase
Length = 89
Score = 48.1 bits (24), Expect = 8e-07
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 40 aaatcacattgccagggatttcca 63
||||||||||||||||||||||||
Sbjct: 54 aaatcacattgccagggatttcca 77
>34557_fru-mir-23a-1:mirbase
Length = 88
Score = 48.1 bits (24), Expect = 8e-07
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 40 aaatcacattgccagggatttcca 63
||||||||||||||||||||||||
Sbjct: 54 aaatcacattgccagggatttcca 77
>34705_tni-mir-23a-1:mirbase
Length = 88
Score = 48.1 bits (24), Expect = 8e-07
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 40 aaatcacattgccagggatttcca 63
||||||||||||||||||||||||
Sbjct: 54 aaatcacattgccagggatttcca 77
>25442_pma-mir-23a:mirbase
Length = 78
Score = 40.1 bits (20), Expect = 2e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 40 aaatcacattgccagggatt 59
||||||||||||||||||||
Sbjct: 48 aaatcacattgccagggatt 67
>25443_pma-mir-23b:mirbase
Length = 84
Score = 40.1 bits (20), Expect = 2e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 40 aaatcacattgccagggatt 59
||||||||||||||||||||
Sbjct: 52 aaatcacattgccagggatt 71
>25715_xtr-mir-23b:mirbase
Length = 88
Score = 40.1 bits (20), Expect = 2e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 40 aaatcacattgccagggatt 59
||||||||||||||||||||
Sbjct: 51 aaatcacattgccagggatt 70
>25907_gga-mir-23b:mirbase
Length = 86
Score = 40.1 bits (20), Expect = 2e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 40 aaatcacattgccagggatt 59
||||||||||||||||||||
Sbjct: 50 aaatcacattgccagggatt 69
>26412_tgu-mir-23:mirbase
Length = 71
Score = 40.1 bits (20), Expect = 2e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 40 aaatcacattgccagggatt 59
||||||||||||||||||||
Sbjct: 39 aaatcacattgccagggatt 58
>26638_cfa-mir-23b:mirbase
Length = 54
Score = 40.1 bits (20), Expect = 2e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 40 aaatcacattgccagggatt 59
||||||||||||||||||||
Sbjct: 34 aaatcacattgccagggatt 53
>26960_eca-mir-23b:mirbase
Length = 74
Score = 40.1 bits (20), Expect = 2e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 40 aaatcacattgccagggatt 59
||||||||||||||||||||
Sbjct: 44 aaatcacattgccagggatt 63
>27344_mdo-mir-23b:mirbase
Length = 74
Score = 40.1 bits (20), Expect = 2e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 40 aaatcacattgccagggatt 59
||||||||||||||||||||
Sbjct: 44 aaatcacattgccagggatt 63
>27666_mml-mir-23b:mirbase
Length = 97
Score = 40.1 bits (20), Expect = 2e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 40 aaatcacattgccagggatt 59
||||||||||||||||||||
Sbjct: 56 aaatcacattgccagggatt 75
>28375_hsa-mir-23b:mirbase
Length = 97
Score = 40.1 bits (20), Expect = 2e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 40 aaatcacattgccagggatt 59
||||||||||||||||||||
Sbjct: 56 aaatcacattgccagggatt 75
>30055_ppa-mir-23b:mirbase
Length = 97
Score = 40.1 bits (20), Expect = 2e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 40 aaatcacattgccagggatt 59
||||||||||||||||||||
Sbjct: 56 aaatcacattgccagggatt 75
>30162_ptr-mir-23b:mirbase
Length = 97
Score = 40.1 bits (20), Expect = 2e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 40 aaatcacattgccagggatt 59
||||||||||||||||||||
Sbjct: 56 aaatcacattgccagggatt 75
>30767_ppy-mir-23b:mirbase
Length = 97
Score = 40.1 bits (20), Expect = 2e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 40 aaatcacattgccagggatt 59
||||||||||||||||||||
Sbjct: 56 aaatcacattgccagggatt 75
>31790_mmu-mir-23b:mirbase
Length = 74
Score = 40.1 bits (20), Expect = 2e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 40 aaatcacattgccagggatt 59
||||||||||||||||||||
Sbjct: 44 aaatcacattgccagggatt 63
>32674_rno-mir-23b:mirbase
Length = 97
Score = 40.1 bits (20), Expect = 2e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 40 aaatcacattgccagggatt 59
||||||||||||||||||||
Sbjct: 56 aaatcacattgccagggatt 75
>33145_bta-mir-23b:mirbase
Length = 60
Score = 40.1 bits (20), Expect = 2e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 40 aaatcacattgccagggatt 59
||||||||||||||||||||
Sbjct: 36 aaatcacattgccagggatt 55
>33146_bta-mir-23b:mirbase
Length = 60
Score = 40.1 bits (20), Expect = 2e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 40 aaatcacattgccagggatt 59
||||||||||||||||||||
Sbjct: 36 aaatcacattgccagggatt 55
>33927_ssc-mir-23b:mirbase
Length = 80
Score = 40.1 bits (20), Expect = 2e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 40 aaatcacattgccagggatt 59
||||||||||||||||||||
Sbjct: 48 aaatcacattgccagggatt 67
>34227_dre-mir-23b:mirbase
Length = 81
Score = 40.1 bits (20), Expect = 2e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 40 aaatcacattgccagggatt 59
||||||||||||||||||||
Sbjct: 49 aaatcacattgccagggatt 68
>34560_fru-mir-23b:mirbase
Length = 73
Score = 40.1 bits (20), Expect = 2e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 40 aaatcacattgccagggatt 59
||||||||||||||||||||
Sbjct: 43 aaatcacattgccagggatt 62
>34708_tni-mir-23b:mirbase
Length = 73
Score = 40.1 bits (20), Expect = 2e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 40 aaatcacattgccagggatt 59
||||||||||||||||||||
Sbjct: 43 aaatcacattgccagggatt 62
>31441_oan-mir-23b:mirbase
Length = 109
Score = 38.2 bits (19), Expect = 8e-04
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 40 aaatcacattgccagggat 58
|||||||||||||||||||
Sbjct: 61 aaatcacattgccagggat 79
