miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>33156_bta-mir-27b:mirbase
Length = 97
Score = 159 bits (80), Expect = 4e-40
Identities = 80/80 (100%)
Strand = Plus / Plus
Query: 1 acgaggtgcagagcttagctgattggtgaacagtgactggtttccgctttgttcacagtg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10 acgaggtgcagagcttagctgattggtgaacagtgactggtttccgctttgttcacagtg 69
Query: 61 gctaagttctgcacctgaag 80
||||||||||||||||||||
Sbjct: 70 gctaagttctgcacctgaag 89
>26967_eca-mir-27b:mirbase
Length = 73
Score = 145 bits (73), Expect = 5e-36
Identities = 73/73 (100%)
Strand = Plus / Plus
Query: 4 aggtgcagagcttagctgattggtgaacagtgactggtttccgctttgttcacagtggct 63
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 aggtgcagagcttagctgattggtgaacagtgactggtttccgctttgttcacagtggct 60
Query: 64 aagttctgcacct 76
|||||||||||||
Sbjct: 61 aagttctgcacct 73
>27674_mml-mir-27b:mirbase
Length = 97
Score = 145 bits (73), Expect = 5e-36
Identities = 76/77 (98%)
Strand = Plus / Plus
Query: 4 aggtgcagagcttagctgattggtgaacagtgactggtttccgctttgttcacagtggct 63
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 13 aggtgcagagcttagctgattggtgaacagtgattggtttccgctttgttcacagtggct 72
Query: 64 aagttctgcacctgaag 80
|||||||||||||||||
Sbjct: 73 aagttctgcacctgaag 89
>28384_hsa-mir-27b:mirbase
Length = 97
Score = 145 bits (73), Expect = 5e-36
Identities = 76/77 (98%)
Strand = Plus / Plus
Query: 4 aggtgcagagcttagctgattggtgaacagtgactggtttccgctttgttcacagtggct 63
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 13 aggtgcagagcttagctgattggtgaacagtgattggtttccgctttgttcacagtggct 72
Query: 64 aagttctgcacctgaag 80
|||||||||||||||||
Sbjct: 73 aagttctgcacctgaag 89
>30170_ptr-mir-27b:mirbase
Length = 96
Score = 145 bits (73), Expect = 5e-36
Identities = 76/77 (98%)
Strand = Plus / Plus
Query: 4 aggtgcagagcttagctgattggtgaacagtgactggtttccgctttgttcacagtggct 63
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 12 aggtgcagagcttagctgattggtgaacagtgattggtttccgctttgttcacagtggct 71
Query: 64 aagttctgcacctgaag 80
|||||||||||||||||
Sbjct: 72 aagttctgcacctgaag 88
>30775_ppy-mir-27b:mirbase
Length = 97
Score = 145 bits (73), Expect = 5e-36
Identities = 76/77 (98%)
Strand = Plus / Plus
Query: 4 aggtgcagagcttagctgattggtgaacagtgactggtttccgctttgttcacagtggct 63
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 13 aggtgcagagcttagctgattggtgaacagtgattggtttccgctttgttcacagtggct 72
Query: 64 aagttctgcacctgaag 80
|||||||||||||||||
Sbjct: 73 aagttctgcacctgaag 89
>32681_rno-mir-27b:mirbase
Length = 97
Score = 145 bits (73), Expect = 5e-36
Identities = 76/77 (98%)
Strand = Plus / Plus
Query: 4 aggtgcagagcttagctgattggtgaacagtgactggtttccgctttgttcacagtggct 63
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 13 aggtgcagagcttagctgattggtgaacagtgattggtttccgctttgttcacagtggct 72
Query: 64 aagttctgcacctgaag 80
|||||||||||||||||
Sbjct: 73 aagttctgcacctgaag 89
>31798_mmu-mir-27b:mirbase
Length = 73
Score = 137 bits (69), Expect = 1e-33
Identities = 72/73 (98%)
Strand = Plus / Plus
Query: 4 aggtgcagagcttagctgattggtgaacagtgactggtttccgctttgttcacagtggct 63
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 1 aggtgcagagcttagctgattggtgaacagtgattggtttccgctttgttcacagtggct 60
Query: 64 aagttctgcacct 76
|||||||||||||
Sbjct: 61 aagttctgcacct 73
>26416_tgu-mir-27:mirbase
Length = 91
Score = 133 bits (67), Expect = 2e-32
Identities = 76/79 (96%)
Strand = Plus / Plus
Query: 2 cgaggtgcagagcttagctgattggtgaacagtgactggtttccgctttgttcacagtgg 61
||||||||||||||||||||||||||||||||||| || ||||| |||||||||||||||
Sbjct: 11 cgaggtgcagagcttagctgattggtgaacagtgattgttttcctctttgttcacagtgg 70
Query: 62 ctaagttctgcacctgaag 80
|||||||||||||||||||
Sbjct: 71 ctaagttctgcacctgaag 89
>26646_cfa-mir-27b:mirbase
Length = 63
Score = 125 bits (63), Expect = 5e-30
Identities = 63/63 (100%)
Strand = Plus / Plus
Query: 10 agagcttagctgattggtgaacagtgactggtttccgctttgttcacagtggctaagttc 69
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 agagcttagctgattggtgaacagtgactggtttccgctttgttcacagtggctaagttc 60
Query: 70 tgc 72
|||
Sbjct: 61 tgc 63
>25910_gga-mir-27b:mirbase
Length = 97
Score = 123 bits (62), Expect = 2e-29
Identities = 74/78 (94%)
Strand = Plus / Plus
Query: 3 gaggtgcagagcttagctgattggtgaacagtgactggtttccgctttgttcacagtggc 62
|||||||||||||||||||||||||||||||||| || || || ||||||||||||||||
Sbjct: 12 gaggtgcagagcttagctgattggtgaacagtgattgtttccctctttgttcacagtggc 71
Query: 63 taagttctgcacctgaag 80
||||||||||||||||||
Sbjct: 72 taagttctgcacctgaag 89
>25724_xtr-mir-27b:mirbase
Length = 96
Score = 121 bits (61), Expect = 8e-29
Identities = 73/77 (94%)
Strand = Plus / Plus
Query: 4 aggtgcagagcttagctgattggtgaacagtgactggtttccgctttgttcacagtggct 63
||||||||||||||||||||||||||||||||| || || || |||||||||||||||||
Sbjct: 13 aggtgcagagcttagctgattggtgaacagtgattgattccctctttgttcacagtggct 72
Query: 64 aagttctgcacctgaag 80
|||||||||||||||||
Sbjct: 73 aagttctgcacctgaag 89
>27352_mdo-mir-27b:mirbase
Length = 97
Score = 121 bits (61), Expect = 8e-29
Identities = 73/77 (94%)
Strand = Plus / Plus
Query: 4 aggtgcagagcttagctgattggtgaacagtgactggtttccgctttgttcacagtggct 63
|||||||||||||||| |||||||||||||| |||| ||||| |||||||||||||||||
Sbjct: 13 aggtgcagagcttagccgattggtgaacagtcactgatttcctctttgttcacagtggct 72
Query: 64 aagttctgcacctgaag 80
|||||||||||||||||
Sbjct: 73 aagttctgcacctgaag 89
>34566_fru-mir-27b:mirbase
Length = 74
Score = 113 bits (57), Expect = 2e-26
Identities = 66/69 (95%)
Strand = Plus / Plus
Query: 9 cagagcttagctgattggtgaacagtgactggtttccgctttgttcacagtggctaagtt 68
|||||||||||||||||||||||||||| || ||||| ||||||||||||||||||||||
Sbjct: 6 cagagcttagctgattggtgaacagtgattgatttcctctttgttcacagtggctaagtt 65
Query: 69 ctgcacctg 77
|||||||||
Sbjct: 66 ctgcacctg 74
>34713_tni-mir-27b:mirbase
Length = 74
Score = 113 bits (57), Expect = 2e-26
Identities = 66/69 (95%)
Strand = Plus / Plus
Query: 9 cagagcttagctgattggtgaacagtgactggtttccgctttgttcacagtggctaagtt 68
|||||||||||||||||||||||||||| || ||||| ||||||||||||||||||||||
Sbjct: 6 cagagcttagctgattggtgaacagtgattgatttcctctttgttcacagtggctaagtt 65
Query: 69 ctgcacctg 77
|||||||||
Sbjct: 66 ctgcacctg 74
>31445_oan-mir-27b:mirbase
Length = 117
Score = 81.8 bits (41), Expect = 7e-17
Identities = 59/65 (90%)
Strand = Plus / Plus
Query: 8 gcagagcttagctgattggtgaacagtgactggtttccgctttgttcacagtggctaagt 67
||||||||||||||||||||||||||||| || | | |||||||||||||||||||||
Sbjct: 28 gcagagcttagctgattggtgaacagtgattgctggactctttgttcacagtggctaagt 87
Query: 68 tctgc 72
|||||
Sbjct: 88 tctgc 92
>34238_dre-mir-27b:mirbase
Length = 91
Score = 81.8 bits (41), Expect = 7e-17
Identities = 67/75 (89%), Gaps = 3/75 (4%)
Strand = Plus / Plus
Query: 4 aggtgcagagcttagctgattggtgaacagtgactggtttccgctttgttcacagtggct 63
||||||||||||||||||||||||||||||||| || | |||||||||||||||||
Sbjct: 12 aggtgcagagcttagctgattggtgaacagtgattg---aactctttgttcacagtggct 68
Query: 64 aagttctgcacctga 78
|||||||||| ||||
Sbjct: 69 aagttctgcatctga 83
>25450_pma-mir-27b:mirbase
Length = 75
Score = 48.1 bits (24), Expect = 9e-07
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 50 tgttcacagtggctaagttctgca 73
||||||||||||||||||||||||
Sbjct: 47 tgttcacagtggctaagttctgca 70
>34240_dre-mir-27d:mirbase
Length = 89
Score = 48.1 bits (24), Expect = 9e-07
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 48 tttgttcacagtggctaagttctgcacc 75
||||||||||||||||||||||| ||||
Sbjct: 53 tttgttcacagtggctaagttcttcacc 80
>25449_pma-mir-27a:mirbase
Length = 75
Score = 42.1 bits (21), Expect = 6e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 49 ttgttcacagtggctaagttc 69
|||||||||||||||||||||
Sbjct: 47 ttgttcacagtggctaagttc 67
>34568_fru-mir-27e:mirbase
Length = 100
Score = 42.1 bits (21), Expect = 6e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 49 ttgttcacagtggctaagttc 69
|||||||||||||||||||||
Sbjct: 57 ttgttcacagtggctaagttc 77
>34715_tni-mir-27e:mirbase
Length = 83
Score = 42.1 bits (21), Expect = 6e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 49 ttgttcacagtggctaagttc 69
|||||||||||||||||||||
Sbjct: 57 ttgttcacagtggctaagttc 77
>25723_xtr-mir-27a:mirbase
Length = 76
Score = 40.1 bits (20), Expect = 2e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 50 tgttcacagtggctaagttc 69
||||||||||||||||||||
Sbjct: 49 tgttcacagtggctaagttc 68
>25725_xtr-mir-27c-1:mirbase
Length = 82
Score = 40.1 bits (20), Expect = 2e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 50 tgttcacagtggctaagttc 69
||||||||||||||||||||
Sbjct: 52 tgttcacagtggctaagttc 71
>25726_xtr-mir-27c-2:mirbase
Length = 82
Score = 40.1 bits (20), Expect = 2e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 50 tgttcacagtggctaagttc 69
||||||||||||||||||||
Sbjct: 52 tgttcacagtggctaagttc 71
>26645_cfa-mir-27a:mirbase
Length = 60
Score = 40.1 bits (20), Expect = 2e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 50 tgttcacagtggctaagttc 69
||||||||||||||||||||
Sbjct: 39 tgttcacagtggctaagttc 58
>26966_eca-mir-27a:mirbase
Length = 77
Score = 40.1 bits (20), Expect = 2e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 50 tgttcacagtggctaagttc 69
||||||||||||||||||||
Sbjct: 49 tgttcacagtggctaagttc 68
>27351_mdo-mir-27a:mirbase
Length = 86
Score = 40.1 bits (20), Expect = 2e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 50 tgttcacagtggctaagttc 69
||||||||||||||||||||
Sbjct: 54 tgttcacagtggctaagttc 73
>27491_age-mir-27a:mirbase
Length = 78
Score = 40.1 bits (20), Expect = 2e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 50 tgttcacagtggctaagttc 69
||||||||||||||||||||
Sbjct: 49 tgttcacagtggctaagttc 68
>27599_sla-mir-27a:mirbase
Length = 78
Score = 40.1 bits (20), Expect = 2e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 50 tgttcacagtggctaagttc 69
||||||||||||||||||||
Sbjct: 49 tgttcacagtggctaagttc 68
>27673_mml-mir-27a:mirbase
Length = 78
Score = 40.1 bits (20), Expect = 2e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 50 tgttcacagtggctaagttc 69
||||||||||||||||||||
Sbjct: 49 tgttcacagtggctaagttc 68
>28187_mne-mir-27a:mirbase
Length = 79
Score = 40.1 bits (20), Expect = 2e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 50 tgttcacagtggctaagttc 69
||||||||||||||||||||
Sbjct: 49 tgttcacagtggctaagttc 68
>28273_ggo-mir-27a:mirbase
Length = 78
Score = 40.1 bits (20), Expect = 2e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 50 tgttcacagtggctaagttc 69
||||||||||||||||||||
Sbjct: 49 tgttcacagtggctaagttc 68
>28383_hsa-mir-27a:mirbase
Length = 78
Score = 40.1 bits (20), Expect = 2e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 50 tgttcacagtggctaagttc 69
||||||||||||||||||||
Sbjct: 49 tgttcacagtggctaagttc 68
>30060_ppa-mir-27a:mirbase
Length = 78
Score = 40.1 bits (20), Expect = 2e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 50 tgttcacagtggctaagttc 69
||||||||||||||||||||
Sbjct: 49 tgttcacagtggctaagttc 68
>30169_ptr-mir-27a:mirbase
Length = 78
Score = 40.1 bits (20), Expect = 2e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 50 tgttcacagtggctaagttc 69
||||||||||||||||||||
Sbjct: 49 tgttcacagtggctaagttc 68
>30774_ppy-mir-27a:mirbase
Length = 78
Score = 40.1 bits (20), Expect = 2e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 50 tgttcacagtggctaagttc 69
||||||||||||||||||||
Sbjct: 49 tgttcacagtggctaagttc 68
>31404_lca-mir-27a:mirbase
Length = 78
Score = 40.1 bits (20), Expect = 2e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 50 tgttcacagtggctaagttc 69
||||||||||||||||||||
Sbjct: 49 tgttcacagtggctaagttc 68
>31444_oan-mir-27a:mirbase
Length = 85
Score = 40.1 bits (20), Expect = 2e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 50 tgttcacagtggctaagttc 69
||||||||||||||||||||
Sbjct: 51 tgttcacagtggctaagttc 70
>31797_mmu-mir-27a:mirbase
Length = 87
Score = 40.1 bits (20), Expect = 2e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 50 tgttcacagtggctaagttc 69
||||||||||||||||||||
Sbjct: 54 tgttcacagtggctaagttc 73
>32680_rno-mir-27a:mirbase
Length = 87
Score = 40.1 bits (20), Expect = 2e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 50 tgttcacagtggctaagttc 69
||||||||||||||||||||
Sbjct: 54 tgttcacagtggctaagttc 73
>33154_bta-mir-27a:mirbase
Length = 78
Score = 40.1 bits (20), Expect = 2e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 50 tgttcacagtggctaagttc 69
||||||||||||||||||||
Sbjct: 52 tgttcacagtggctaagttc 71
>33155_bta-mir-27a:mirbase
Length = 78
Score = 40.1 bits (20), Expect = 2e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 50 tgttcacagtggctaagttc 69
||||||||||||||||||||
Sbjct: 52 tgttcacagtggctaagttc 71
>33931_ssc-mir-27a:mirbase
Length = 82
Score = 40.1 bits (20), Expect = 2e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 50 tgttcacagtggctaagttc 69
||||||||||||||||||||
Sbjct: 52 tgttcacagtggctaagttc 71
>34237_dre-mir-27a:mirbase
Length = 131
Score = 40.1 bits (20), Expect = 2e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 50 tgttcacagtggctaagttc 69
||||||||||||||||||||
Sbjct: 77 tgttcacagtggctaagttc 96
>34241_dre-mir-27e:mirbase
Length = 106
Score = 40.1 bits (20), Expect = 2e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 50 tgttcacagtggctaagttc 69
||||||||||||||||||||
Sbjct: 63 tgttcacagtggctaagttc 82
>34239_dre-mir-27c:mirbase
Length = 88
Score = 38.2 bits (19), Expect = 9e-04
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 50 tgttcacagtggctaagttctgc 72
|||||||||||| ||||||||||
Sbjct: 54 tgttcacagtggttaagttctgc 76
>34567_fru-mir-27c:mirbase
Length = 78
Score = 38.2 bits (19), Expect = 9e-04
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 50 tgttcacagtggctaagttctgc 72
|||||||||||| ||||||||||
Sbjct: 52 tgttcacagtggttaagttctgc 74
>34714_tni-mir-27c:mirbase
Length = 76
Score = 38.2 bits (19), Expect = 9e-04
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 50 tgttcacagtggctaagttctgc 72
|||||||||||| ||||||||||
Sbjct: 50 tgttcacagtggttaagttctgc 72
