miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>33934_ssc-mir-28:mirbase
Length = 86
Score = 170 bits (86), Expect = 1e-43
Identities = 86/86 (100%)
Strand = Plus / Plus
Query: 1 ggtccttgccctcaaggagctcacactctattgagttgcctttctgtcttccccactaga 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 ggtccttgccctcaaggagctcacactctattgagttgcctttctgtcttccccactaga 60
Query: 61 ttgtgagctcctggagggcaggcact 86
||||||||||||||||||||||||||
Sbjct: 61 ttgtgagctcctggagggcaggcact 86
>26968_eca-mir-28:mirbase
Length = 86
Score = 147 bits (74), Expect = 1e-36
Identities = 83/86 (96%)
Strand = Plus / Plus
Query: 1 ggtccttgccctcaaggagctcacactctattgagttgcctttctgtcttccccactaga 60
||||||||||||||||||||||||| |||||||||||||||||||| ||| |||||||||
Sbjct: 1 ggtccttgccctcaaggagctcacagtctattgagttgcctttctgactttcccactaga 60
Query: 61 ttgtgagctcctggagggcaggcact 86
||||||||||||||||||||||||||
Sbjct: 61 ttgtgagctcctggagggcaggcact 86
>26969_eca-mir-28:mirbase
Length = 86
Score = 147 bits (74), Expect = 1e-36
Identities = 83/86 (96%)
Strand = Plus / Plus
Query: 1 ggtccttgccctcaaggagctcacactctattgagttgcctttctgtcttccccactaga 60
||||||||||||||||||||||||| |||||||||||||||||||| ||| |||||||||
Sbjct: 1 ggtccttgccctcaaggagctcacagtctattgagttgcctttctgactttcccactaga 60
Query: 61 ttgtgagctcctggagggcaggcact 86
||||||||||||||||||||||||||
Sbjct: 61 ttgtgagctcctggagggcaggcact 86
>27492_age-mir-28:mirbase
Length = 86
Score = 147 bits (74), Expect = 1e-36
Identities = 83/86 (96%)
Strand = Plus / Plus
Query: 1 ggtccttgccctcaaggagctcacactctattgagttgcctttctgtcttccccactaga 60
||||||||||||||||||||||||| |||||||||||||||||||| ||| |||||||||
Sbjct: 1 ggtccttgccctcaaggagctcacagtctattgagttgcctttctgactttcccactaga 60
Query: 61 ttgtgagctcctggagggcaggcact 86
||||||||||||||||||||||||||
Sbjct: 61 ttgtgagctcctggagggcaggcact 86
>27552_lla-mir-28:mirbase
Length = 86
Score = 147 bits (74), Expect = 1e-36
Identities = 83/86 (96%)
Strand = Plus / Plus
Query: 1 ggtccttgccctcaaggagctcacactctattgagttgcctttctgtcttccccactaga 60
||||||||||||||||||||||||| |||||||||||||||||||| ||| |||||||||
Sbjct: 1 ggtccttgccctcaaggagctcacagtctattgagttgcctttctgactttcccactaga 60
Query: 61 ttgtgagctcctggagggcaggcact 86
||||||||||||||||||||||||||
Sbjct: 61 ttgtgagctcctggagggcaggcact 86
>28188_mne-mir-28:mirbase
Length = 86
Score = 139 bits (70), Expect = 4e-34
Identities = 82/86 (95%)
Strand = Plus / Plus
Query: 1 ggtccttgccctcaaggagctcacactctattgagttgcctttctgtcttccccactaga 60
||||||||||||||||||||||||| ||||||||||| |||||||| ||| |||||||||
Sbjct: 1 ggtccttgccctcaaggagctcacagtctattgagtttcctttctgactttcccactaga 60
Query: 61 ttgtgagctcctggagggcaggcact 86
||||||||||||||||||||||||||
Sbjct: 61 ttgtgagctcctggagggcaggcact 86
>28274_ggo-mir-28:mirbase
Length = 86
Score = 139 bits (70), Expect = 4e-34
Identities = 82/86 (95%)
Strand = Plus / Plus
Query: 1 ggtccttgccctcaaggagctcacactctattgagttgcctttctgtcttccccactaga 60
||||||||||||||||||||||||| ||||||||||| |||||||| ||| |||||||||
Sbjct: 1 ggtccttgccctcaaggagctcacagtctattgagttacctttctgactttcccactaga 60
Query: 61 ttgtgagctcctggagggcaggcact 86
||||||||||||||||||||||||||
Sbjct: 61 ttgtgagctcctggagggcaggcact 86
>28385_hsa-mir-28:mirbase
Length = 86
Score = 139 bits (70), Expect = 4e-34
Identities = 82/86 (95%)
Strand = Plus / Plus
Query: 1 ggtccttgccctcaaggagctcacactctattgagttgcctttctgtcttccccactaga 60
||||||||||||||||||||||||| ||||||||||| |||||||| ||| |||||||||
Sbjct: 1 ggtccttgccctcaaggagctcacagtctattgagttacctttctgactttcccactaga 60
Query: 61 ttgtgagctcctggagggcaggcact 86
||||||||||||||||||||||||||
Sbjct: 61 ttgtgagctcctggagggcaggcact 86
>28386_hsa-mir-28:mirbase
Length = 86
Score = 139 bits (70), Expect = 4e-34
Identities = 82/86 (95%)
Strand = Plus / Plus
Query: 1 ggtccttgccctcaaggagctcacactctattgagttgcctttctgtcttccccactaga 60
||||||||||||||||||||||||| ||||||||||| |||||||| ||| |||||||||
Sbjct: 1 ggtccttgccctcaaggagctcacagtctattgagttacctttctgactttcccactaga 60
Query: 61 ttgtgagctcctggagggcaggcact 86
||||||||||||||||||||||||||
Sbjct: 61 ttgtgagctcctggagggcaggcact 86
>30061_ppa-mir-28:mirbase
Length = 86
Score = 139 bits (70), Expect = 4e-34
Identities = 82/86 (95%)
Strand = Plus / Plus
Query: 1 ggtccttgccctcaaggagctcacactctattgagttgcctttctgtcttccccactaga 60
||||||||||||||||||||||||| ||||||||||| |||||||| ||| |||||||||
Sbjct: 1 ggtccttgccctcaaggagctcacagtctattgagttacctttctgactttcccactaga 60
Query: 61 ttgtgagctcctggagggcaggcact 86
||||||||||||||||||||||||||
Sbjct: 61 ttgtgagctcctggagggcaggcact 86
>30171_ptr-mir-28:mirbase
Length = 86
Score = 139 bits (70), Expect = 4e-34
Identities = 82/86 (95%)
Strand = Plus / Plus
Query: 1 ggtccttgccctcaaggagctcacactctattgagttgcctttctgtcttccccactaga 60
||||||||||||||||||||||||| ||||||||||| |||||||| ||| |||||||||
Sbjct: 1 ggtccttgccctcaaggagctcacagtctattgagttacctttctgactttcccactaga 60
Query: 61 ttgtgagctcctggagggcaggcact 86
||||||||||||||||||||||||||
Sbjct: 61 ttgtgagctcctggagggcaggcact 86
>33157_bta-mir-28:mirbase
Length = 86
Score = 139 bits (70), Expect = 4e-34
Identities = 82/86 (95%)
Strand = Plus / Plus
Query: 1 ggtccttgccctcaaggagctcacactctattgagttgcctttctgtcttccccactaga 60
||||||||||||||||||||||||| |||||||||||||||||||| ||| |||||||||
Sbjct: 1 ggtccttgccctcaaggagctcacagtctattgagttgcctttctgactttcccactaga 60
Query: 61 ttgtgagctcctggagggcaggcact 86
||| ||||||||||||||||||||||
Sbjct: 61 ttgagagctcctggagggcaggcact 86
>27600_sla-mir-28:mirbase
Length = 86
Score = 131 bits (66), Expect = 9e-32
Identities = 81/86 (94%)
Strand = Plus / Plus
Query: 1 ggtccttgccctcaaggagctcacactctattgagttgcctttctgtcttccccactaga 60
||||||||||||||||||||||||| ||||||||||||||||||| ||| |||||||||
Sbjct: 1 ggtccttgccctcaaggagctcacagtctattgagttgcctttctaactttcccactaga 60
Query: 61 ttgtgagctcctggagggcaggcact 86
|||| |||||||||||||||||||||
Sbjct: 61 ttgtaagctcctggagggcaggcact 86
>27675_mml-mir-28:mirbase
Length = 86
Score = 131 bits (66), Expect = 9e-32
Identities = 81/86 (94%)
Strand = Plus / Plus
Query: 1 ggtccttgccctcaaggagctcacactctattgagttgcctttctgtcttccccactaga 60
||||||||||||||||||||||||| ||||||||||| ||||| || ||| |||||||||
Sbjct: 1 ggtccttgccctcaaggagctcacagtctattgagtttcctttgtgactttcccactaga 60
Query: 61 ttgtgagctcctggagggcaggcact 86
||||||||||||||||||||||||||
Sbjct: 61 ttgtgagctcctggagggcaggcact 86
>30776_ppy-mir-28:mirbase
Length = 86
Score = 131 bits (66), Expect = 9e-32
Identities = 81/86 (94%)
Strand = Plus / Plus
Query: 1 ggtccttgccctcaaggagctcacactctattgagttgcctttctgtcttccccactaga 60
||||||||||||||||||||||||| ||||||||||| |||||||| || |||||||||
Sbjct: 1 ggtccttgccctcaaggagctcacagtctattgagttacctttctgattttcccactaga 60
Query: 61 ttgtgagctcctggagggcaggcact 86
||||||||||||||||||||||||||
Sbjct: 61 ttgtgagctcctggagggcaggcact 86
>31799_mmu-mir-28:mirbase
Length = 86
Score = 101 bits (51), Expect = 8e-23
Identities = 69/75 (92%)
Strand = Plus / Plus
Query: 12 tcaaggagctcacactctattgagttgcctttctgtcttccccactagattgtgagctcc 71
|||||||||||||| |||||||||||||||||||| | |||||||||||||||||| |
Sbjct: 12 tcaaggagctcacagtctattgagttgcctttctgattctcccactagattgtgagctgc 71
Query: 72 tggagggcaggcact 86
|||||||||||||||
Sbjct: 72 tggagggcaggcact 86
>26647_cfa-mir-28:mirbase
Length = 62
Score = 99.6 bits (50), Expect = 3e-22
Identities = 59/62 (95%)
Strand = Plus / Plus
Query: 14 aaggagctcacactctattgagttgcctttctgtcttccccactagattgtgagctcctg 73
|||||||||||| |||||||||||||||||||| ||| ||||||||||||||||||||||
Sbjct: 1 aaggagctcacagtctattgagttgcctttctgactttcccactagattgtgagctcctg 60
Query: 74 ga 75
||
Sbjct: 61 ga 62
>32682_rno-mir-28:mirbase
Length = 86
Score = 91.7 bits (46), Expect = 8e-20
Identities = 67/74 (90%)
Strand = Plus / Plus
Query: 13 caaggagctcacactctattgagttgcctttctgtcttccccactagattgtgagctcct 72
||||||||||||| ||||||||||| | |||||| | |||||||||||||||||||||
Sbjct: 13 caaggagctcacagtctattgagttccttttctgattctcccactagattgtgagctcct 72
Query: 73 ggagggcaggcact 86
||||||||||||||
Sbjct: 73 ggagggcaggcact 86
>27353_mdo-mir-28:mirbase
Length = 85
Score = 50.1 bits (25), Expect = 3e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 1 ggtccttgccctcaaggagctcaca 25
|||||||||||||||||||||||||
Sbjct: 39 ggtccttgccctcaaggagctcaca 63
>27055_eca-mir-151:mirbase
Length = 69
Score = 40.1 bits (20), Expect = 2e-04
Identities = 26/28 (92%)
Strand = Plus / Minus
Query: 55 actagattgtgagctcctggagggcagg 82
|||||| ||||||||||| |||||||||
Sbjct: 28 actagactgtgagctcctcgagggcagg 1
>27399_mdo-mir-151:mirbase
Length = 72
Score = 40.1 bits (20), Expect = 2e-04
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 7 tgccctcaaggagctcacactcta 30
||||||||||||||||||| ||||
Sbjct: 40 tgccctcaaggagctcacagtcta 17
>27760_mml-mir-151:mirbase
Length = 90
Score = 40.1 bits (20), Expect = 2e-04
Identities = 26/28 (92%)
Strand = Plus / Minus
Query: 55 actagattgtgagctcctggagggcagg 82
|||||| ||||||||||| |||||||||
Sbjct: 31 actagactgtgagctcctcgagggcagg 4
>27761_mml-mir-151:mirbase
Length = 90
Score = 40.1 bits (20), Expect = 2e-04
Identities = 26/28 (92%)
Strand = Plus / Minus
Query: 55 actagattgtgagctcctggagggcagg 82
|||||| ||||||||||| |||||||||
Sbjct: 31 actagactgtgagctcctcgagggcagg 4
>28475_hsa-mir-151:mirbase
Length = 90
Score = 40.1 bits (20), Expect = 2e-04
Identities = 26/28 (92%)
Strand = Plus / Minus
Query: 55 actagattgtgagctcctggagggcagg 82
|||||| ||||||||||| |||||||||
Sbjct: 31 actagactgtgagctcctcgagggcagg 4
>28476_hsa-mir-151:mirbase
Length = 90
Score = 40.1 bits (20), Expect = 2e-04
Identities = 26/28 (92%)
Strand = Plus / Minus
Query: 55 actagattgtgagctcctggagggcagg 82
|||||| ||||||||||| |||||||||
Sbjct: 31 actagactgtgagctcctcgagggcagg 4
>30246_ptr-mir-151:mirbase
Length = 89
Score = 40.1 bits (20), Expect = 2e-04
Identities = 26/28 (92%)
Strand = Plus / Minus
Query: 55 actagattgtgagctcctggagggcagg 82
|||||| ||||||||||| |||||||||
Sbjct: 31 actagactgtgagctcctcgagggcagg 4
>30859_ppy-mir-151:mirbase
Length = 89
Score = 40.1 bits (20), Expect = 2e-04
Identities = 26/28 (92%)
Strand = Plus / Minus
Query: 55 actagattgtgagctcctggagggcagg 82
|||||| ||||||||||| |||||||||
Sbjct: 31 actagactgtgagctcctcgagggcagg 4
>30860_ppy-mir-151:mirbase
Length = 89
Score = 40.1 bits (20), Expect = 2e-04
Identities = 26/28 (92%)
Strand = Plus / Minus
Query: 55 actagattgtgagctcctggagggcagg 82
|||||| ||||||||||| |||||||||
Sbjct: 31 actagactgtgagctcctcgagggcagg 4
>31886_mmu-mir-151:mirbase
Length = 68
Score = 40.1 bits (20), Expect = 2e-04
Identities = 26/28 (92%)
Strand = Plus / Minus
Query: 55 actagattgtgagctcctggagggcagg 82
|||||| ||||||||||| |||||||||
Sbjct: 28 actagactgtgagctcctcgagggcagg 1
>31887_mmu-mir-151:mirbase
Length = 68
Score = 40.1 bits (20), Expect = 2e-04
Identities = 26/28 (92%)
Strand = Plus / Minus
Query: 55 actagattgtgagctcctggagggcagg 82
|||||| ||||||||||| |||||||||
Sbjct: 28 actagactgtgagctcctcgagggcagg 1
>32758_rno-mir-151:mirbase
Length = 97
Score = 40.1 bits (20), Expect = 2e-04
Identities = 26/28 (92%)
Strand = Plus / Minus
Query: 55 actagattgtgagctcctggagggcagg 82
|||||| ||||||||||| |||||||||
Sbjct: 36 actagactgtgagctcctcgagggcagg 9
>33084_rno-mir-3586:mirbase
Length = 120
Score = 40.1 bits (20), Expect = 2e-04
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 55 actagattgtgagctcctggagggcagg 82
|||||| ||||||||||| |||||||||
Sbjct: 62 actagactgtgagctcctcgagggcagg 89
>33085_rno-mir-3586:mirbase
Length = 120
Score = 40.1 bits (20), Expect = 2e-04
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 55 actagattgtgagctcctggagggcagg 82
|||||| ||||||||||| |||||||||
Sbjct: 62 actagactgtgagctcctcgagggcagg 89
>33238_bta-mir-151:mirbase
Length = 69
Score = 40.1 bits (20), Expect = 2e-04
Identities = 26/28 (92%)
Strand = Plus / Minus
Query: 55 actagattgtgagctcctggagggcagg 82
|||||| ||||||||||| |||||||||
Sbjct: 28 actagactgtgagctcctcgagggcagg 1
>34001_ssc-mir-151:mirbase
Length = 80
Score = 40.1 bits (20), Expect = 2e-04
Identities = 26/28 (92%)
Strand = Plus / Minus
Query: 55 actagattgtgagctcctggagggcagg 82
|||||| ||||||||||| |||||||||
Sbjct: 32 actagactgtgagctcctcgagggcagg 5
>34002_ssc-mir-151:mirbase
Length = 80
Score = 40.1 bits (20), Expect = 2e-04
Identities = 26/28 (92%)
Strand = Plus / Minus
Query: 55 actagattgtgagctcctggagggcagg 82
|||||| ||||||||||| |||||||||
Sbjct: 32 actagactgtgagctcctcgagggcagg 5
>28477_hsa-mir-151b:mirbase
Length = 96
Score = 38.2 bits (19), Expect = 0.001
Identities = 25/27 (92%)
Strand = Plus / Minus
Query: 56 ctagattgtgagctcctggagggcagg 82
||||| ||||||||||| |||||||||
Sbjct: 79 ctagactgtgagctcctcgagggcagg 53
