miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>31802_mmu-mir-29a:mirbase
Length = 88
Score = 163 bits (82), Expect = 2e-41
Identities = 85/86 (98%)
Strand = Plus / Plus
Query: 1 ccccttagaggatgactgatttcttttggtgttcagagtcaatataattttctagcacca 60
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 2 ccccttagaggatgactgatttcttttggtgttcagagtcaatagaattttctagcacca 61
Query: 61 tctgaaatcggttataatgattgggg 86
||||||||||||||||||||||||||
Sbjct: 62 tctgaaatcggttataatgattgggg 87
>32683_rno-mir-29a:mirbase
Length = 88
Score = 163 bits (82), Expect = 2e-41
Identities = 85/86 (98%)
Strand = Plus / Plus
Query: 1 ccccttagaggatgactgatttcttttggtgttcagagtcaatataattttctagcacca 60
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 2 ccccttagaggatgactgatttcttttggtgttcagagtcaatagaattttctagcacca 61
Query: 61 tctgaaatcggttataatgattgggg 86
||||||||||||||||||||||||||
Sbjct: 62 tctgaaatcggttataatgattgggg 87
>33044_rno-mir-3556a:mirbase
Length = 118
Score = 163 bits (82), Expect = 2e-41
Identities = 85/86 (98%)
Strand = Plus / Minus
Query: 1 ccccttagaggatgactgatttcttttggtgttcagagtcaatataattttctagcacca 60
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 99 ccccttagaggatgactgatttcttttggtgttcagagtcaatagaattttctagcacca 40
Query: 61 tctgaaatcggttataatgattgggg 86
||||||||||||||||||||||||||
Sbjct: 39 tctgaaatcggttataatgattgggg 14
>31446_oan-mir-29a-1:mirbase
Length = 118
Score = 145 bits (73), Expect = 6e-36
Identities = 79/81 (97%)
Strand = Plus / Plus
Query: 6 tagaggatgactgatttcttttggtgttcagagtcaatataattttctagcaccatctga 65
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||
Sbjct: 23 tagaggatgactgatttcttttggtgttcagagtcaatatcattttctagcaccatttga 82
Query: 66 aatcggttataatgattgggg 86
|||||||||||||||||||||
Sbjct: 83 aatcggttataatgattgggg 103
>25911_gga-mir-29a:mirbase
Length = 89
Score = 131 bits (66), Expect = 9e-32
Identities = 78/82 (95%)
Strand = Plus / Plus
Query: 5 ttagaggatgactgatttcttttggtgttcagagtcaatataattttctagcaccatctg 64
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||
Sbjct: 7 ttagaggatgactgatttcttttggtgttcagagtcaataatattttctagcaccatttg 66
Query: 65 aaatcggttataatgattgggg 86
|||||||||||| |||||||||
Sbjct: 67 aaatcggttatagtgattgggg 88
>26970_eca-mir-29a:mirbase
Length = 65
Score = 129 bits (65), Expect = 3e-31
Identities = 65/65 (100%)
Strand = Plus / Plus
Query: 11 gatgactgatttcttttggtgttcagagtcaatataattttctagcaccatctgaaatcg 70
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 gatgactgatttcttttggtgttcagagtcaatataattttctagcaccatctgaaatcg 60
Query: 71 gttat 75
|||||
Sbjct: 61 gttat 65
>27493_age-mir-29a:mirbase
Length = 64
Score = 127 bits (64), Expect = 1e-30
Identities = 64/64 (100%)
Strand = Plus / Plus
Query: 12 atgactgatttcttttggtgttcagagtcaatataattttctagcaccatctgaaatcgg 71
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 atgactgatttcttttggtgttcagagtcaatataattttctagcaccatctgaaatcgg 60
Query: 72 ttat 75
||||
Sbjct: 61 ttat 64
>27553_lla-mir-29a:mirbase
Length = 64
Score = 127 bits (64), Expect = 1e-30
Identities = 64/64 (100%)
Strand = Plus / Plus
Query: 12 atgactgatttcttttggtgttcagagtcaatataattttctagcaccatctgaaatcgg 71
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 atgactgatttcttttggtgttcagagtcaatataattttctagcaccatctgaaatcgg 60
Query: 72 ttat 75
||||
Sbjct: 61 ttat 64
>27601_sla-mir-29a:mirbase
Length = 64
Score = 127 bits (64), Expect = 1e-30
Identities = 64/64 (100%)
Strand = Plus / Plus
Query: 12 atgactgatttcttttggtgttcagagtcaatataattttctagcaccatctgaaatcgg 71
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 atgactgatttcttttggtgttcagagtcaatataattttctagcaccatctgaaatcgg 60
Query: 72 ttat 75
||||
Sbjct: 61 ttat 64
>27676_mml-mir-29a:mirbase
Length = 64
Score = 127 bits (64), Expect = 1e-30
Identities = 64/64 (100%)
Strand = Plus / Plus
Query: 12 atgactgatttcttttggtgttcagagtcaatataattttctagcaccatctgaaatcgg 71
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 atgactgatttcttttggtgttcagagtcaatataattttctagcaccatctgaaatcgg 60
Query: 72 ttat 75
||||
Sbjct: 61 ttat 64
>28189_mne-mir-29a:mirbase
Length = 64
Score = 127 bits (64), Expect = 1e-30
Identities = 64/64 (100%)
Strand = Plus / Plus
Query: 12 atgactgatttcttttggtgttcagagtcaatataattttctagcaccatctgaaatcgg 71
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 atgactgatttcttttggtgttcagagtcaatataattttctagcaccatctgaaatcgg 60
Query: 72 ttat 75
||||
Sbjct: 61 ttat 64
>28275_ggo-mir-29a:mirbase
Length = 64
Score = 127 bits (64), Expect = 1e-30
Identities = 64/64 (100%)
Strand = Plus / Plus
Query: 12 atgactgatttcttttggtgttcagagtcaatataattttctagcaccatctgaaatcgg 71
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 atgactgatttcttttggtgttcagagtcaatataattttctagcaccatctgaaatcgg 60
Query: 72 ttat 75
||||
Sbjct: 61 ttat 64
>28387_hsa-mir-29a:mirbase
Length = 64
Score = 127 bits (64), Expect = 1e-30
Identities = 64/64 (100%)
Strand = Plus / Plus
Query: 12 atgactgatttcttttggtgttcagagtcaatataattttctagcaccatctgaaatcgg 71
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 atgactgatttcttttggtgttcagagtcaatataattttctagcaccatctgaaatcgg 60
Query: 72 ttat 75
||||
Sbjct: 61 ttat 64
>30062_ppa-mir-29a:mirbase
Length = 64
Score = 127 bits (64), Expect = 1e-30
Identities = 64/64 (100%)
Strand = Plus / Plus
Query: 12 atgactgatttcttttggtgttcagagtcaatataattttctagcaccatctgaaatcgg 71
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 atgactgatttcttttggtgttcagagtcaatataattttctagcaccatctgaaatcgg 60
Query: 72 ttat 75
||||
Sbjct: 61 ttat 64
>30172_ptr-mir-29a:mirbase
Length = 64
Score = 127 bits (64), Expect = 1e-30
Identities = 64/64 (100%)
Strand = Plus / Plus
Query: 12 atgactgatttcttttggtgttcagagtcaatataattttctagcaccatctgaaatcgg 71
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 atgactgatttcttttggtgttcagagtcaatataattttctagcaccatctgaaatcgg 60
Query: 72 ttat 75
||||
Sbjct: 61 ttat 64
>30777_ppy-mir-29a:mirbase
Length = 64
Score = 127 bits (64), Expect = 1e-30
Identities = 64/64 (100%)
Strand = Plus / Plus
Query: 12 atgactgatttcttttggtgttcagagtcaatataattttctagcaccatctgaaatcgg 71
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 atgactgatttcttttggtgttcagagtcaatataattttctagcaccatctgaaatcgg 60
Query: 72 ttat 75
||||
Sbjct: 61 ttat 64
>33158_bta-mir-29a:mirbase
Length = 64
Score = 127 bits (64), Expect = 1e-30
Identities = 64/64 (100%)
Strand = Plus / Plus
Query: 12 atgactgatttcttttggtgttcagagtcaatataattttctagcaccatctgaaatcgg 71
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 atgactgatttcttttggtgttcagagtcaatataattttctagcaccatctgaaatcgg 60
Query: 72 ttat 75
||||
Sbjct: 61 ttat 64
>26648_cfa-mir-29a:mirbase
Length = 60
Score = 119 bits (60), Expect = 3e-28
Identities = 60/60 (100%)
Strand = Plus / Plus
Query: 15 actgatttcttttggtgttcagagtcaatataattttctagcaccatctgaaatcggtta 74
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 actgatttcttttggtgttcagagtcaatataattttctagcaccatctgaaatcggtta 60
>27354_mdo-mir-29a:mirbase
Length = 64
Score = 111 bits (56), Expect = 8e-26
Identities = 62/64 (96%)
Strand = Plus / Plus
Query: 12 atgactgatttcttttggtgttcagagtcaatataattttctagcaccatctgaaatcgg 71
|||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||
Sbjct: 1 atgactgatttcttttggtgttcagagtcaatatcattttctagcaccatttgaaatcgg 60
Query: 72 ttat 75
||||
Sbjct: 61 ttat 64
>26417_tgu-mir-29a-1:mirbase
Length = 71
Score = 101 bits (51), Expect = 8e-23
Identities = 66/71 (92%)
Strand = Plus / Plus
Query: 13 tgactgatttcttttggtgttcagagtcaatataattttctagcaccatctgaaatcggt 72
|||||||||||||||||||||||||||||||| | ||||||||||||| ||||||||||
Sbjct: 1 tgactgatttcttttggtgttcagagtcaataataatttctagcaccatttgaaatcggt 60
Query: 73 tataatgattg 83
|||| ||||||
Sbjct: 61 tatagtgattg 71
>25727_xtr-mir-29a:mirbase
Length = 87
Score = 83.8 bits (42), Expect = 2e-17
Identities = 66/73 (90%), Gaps = 2/73 (2%)
Strand = Plus / Plus
Query: 9 aggatgactgatttcttttggtgttcagagtcaatataattttctagcaccatctgaaat 68
||||||||||||||||| |||||||||||||| | | |||||||||||||| ||||||
Sbjct: 11 aggatgactgatttcttctggtgttcagagtc--ttttgttttctagcaccatttgaaat 68
Query: 69 cggttataatgat 81
|||||||||||||
Sbjct: 69 cggttataatgat 81
>34569_fru-mir-29a-1:mirbase
Length = 71
Score = 67.9 bits (34), Expect = 1e-12
Identities = 55/62 (88%)
Strand = Plus / Plus
Query: 13 tgactgatttcttttggtgttcagagtcaatataattttctagcaccatctgaaatcggt 72
|||||||||||||||||||||||||||| | | ||||||||||||| ||||||||||
Sbjct: 5 tgactgatttcttttggtgttcagagtccaattctgtttctagcaccatttgaaatcggt 64
Query: 73 ta 74
||
Sbjct: 65 ta 66
>34716_tni-mir-29a-1:mirbase
Length = 72
Score = 60.0 bits (30), Expect = 3e-10
Identities = 54/62 (87%)
Strand = Plus / Plus
Query: 13 tgactgatttcttttggtgttcagagtcaatataattttctagcaccatctgaaatcggt 72
|||| ||||||||||||||||||||||| | | ||||||||||||| ||||||||||
Sbjct: 5 tgaccgatttcttttggtgttcagagtccaattctgtttctagcaccatttgaaatcggt 64
Query: 73 ta 74
||
Sbjct: 65 ta 66
>34242_dre-mir-29a-1:mirbase
Length = 126
Score = 56.0 bits (28), Expect = 4e-09
Identities = 34/36 (94%)
Strand = Plus / Plus
Query: 51 tctagcaccatctgaaatcggttataatgattgggg 86
||||||||||| |||||||||||||||||| |||||
Sbjct: 79 tctagcaccatttgaaatcggttataatgactgggg 114
>34243_dre-mir-29a-2:mirbase
Length = 71
Score = 54.0 bits (27), Expect = 2e-08
Identities = 57/67 (85%)
Strand = Plus / Plus
Query: 13 tgactgatttcttttggtgttcagagtcaatataattttctagcaccatctgaaatcggt 72
|||| ||||||||||||||||||||||| | ||||||||||||| ||||||||||
Sbjct: 5 tgaccgatttcttttggtgttcagagtcttttggggtttctagcaccatttgaaatcggt 64
Query: 73 tataatg 79
|| ||||
Sbjct: 65 tacaatg 71
>25729_xtr-mir-29c:mirbase
Length = 90
Score = 50.1 bits (25), Expect = 3e-07
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 51 tctagcaccatctgaaatcggttataatg 79
||||||||||| |||||||||||||||||
Sbjct: 54 tctagcaccatttgaaatcggttataatg 82
>34570_fru-mir-29a-2:mirbase
Length = 126
Score = 48.1 bits (24), Expect = 1e-06
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 50 ttctagcaccatctgaaatcggttataa 77
|||||||||||| |||||||||||||||
Sbjct: 81 ttctagcaccatttgaaatcggttataa 108
>34717_tni-mir-29a-2:mirbase
Length = 100
Score = 48.1 bits (24), Expect = 1e-06
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 50 ttctagcaccatctgaaatcggttataa 77
|||||||||||| |||||||||||||||
Sbjct: 57 ttctagcaccatttgaaatcggttataa 84
>26418_tgu-mir-29a-2:mirbase
Length = 71
Score = 46.1 bits (23), Expect = 4e-06
Identities = 53/63 (84%)
Strand = Plus / Plus
Query: 13 tgactgatttcttttggtgttcagagtcaatataattttctagcaccatctgaaatcggt 72
|||| ||||||| ||||||||||||||| | || ||||||||||| ||||||||||
Sbjct: 1 tgaccgatttctcttggtgttcagagtctcagtttttgtctagcaccatttgaaatcggt 60
Query: 73 tat 75
|||
Sbjct: 61 tat 63
>31447_oan-mir-29a-2:mirbase
Length = 113
Score = 46.1 bits (23), Expect = 4e-06
Identities = 53/63 (84%)
Strand = Plus / Plus
Query: 13 tgactgatttcttttggtgttcagagtcaatataattttctagcaccatctgaaatcggt 72
|||| ||||||| ||||||||||||||| | || ||||||||||| ||||||||||
Sbjct: 24 tgaccgatttctcttggtgttcagagtctcagttcttgtctagcaccatttgaaatcggt 83
Query: 73 tat 75
|||
Sbjct: 84 tat 86
>25451_pma-mir-29a:mirbase
Length = 83
Score = 42.1 bits (21), Expect = 6e-05
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 11 gatgactgatttcttttggtgttcagagt 39
|||||||||||||| |||||||| |||||
Sbjct: 6 gatgactgatttctcttggtgtttagagt 34
>25914_gga-mir-29c:mirbase
Length = 89
Score = 42.1 bits (21), Expect = 6e-05
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 51 tctagcaccatctgaaatcggttat 75
||||||||||| |||||||||||||
Sbjct: 53 tctagcaccatttgaaatcggttat 77
Score = 40.1 bits (20), Expect = 2e-04
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 13 tgactgatttcttttggtgttcagagtc 40
|||| ||||||| |||||||||||||||
Sbjct: 15 tgaccgatttctcttggtgttcagagtc 42
>26973_eca-mir-29c:mirbase
Length = 88
Score = 42.1 bits (21), Expect = 6e-05
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 51 tctagcaccatctgaaatcggttat 75
||||||||||| |||||||||||||
Sbjct: 52 tctagcaccatttgaaatcggttat 76
>26974_eca-mir-29c-2:mirbase
Length = 88
Score = 42.1 bits (21), Expect = 6e-05
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 51 tctagcaccatctgaaatcggttat 75
||||||||||| |||||||||||||
Sbjct: 52 tctagcaccatttgaaatcggttat 76
>27679_mml-mir-29c:mirbase
Length = 88
Score = 42.1 bits (21), Expect = 6e-05
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 51 tctagcaccatctgaaatcggttat 75
||||||||||| |||||||||||||
Sbjct: 52 tctagcaccatttgaaatcggttat 76
>28390_hsa-mir-29c:mirbase
Length = 88
Score = 42.1 bits (21), Expect = 6e-05
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 51 tctagcaccatctgaaatcggttat 75
||||||||||| |||||||||||||
Sbjct: 52 tctagcaccatttgaaatcggttat 76
>30175_ptr-mir-29c:mirbase
Length = 87
Score = 42.1 bits (21), Expect = 6e-05
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 51 tctagcaccatctgaaatcggttat 75
||||||||||| |||||||||||||
Sbjct: 52 tctagcaccatttgaaatcggttat 76
>30780_ppy-mir-29c:mirbase
Length = 88
Score = 42.1 bits (21), Expect = 6e-05
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 51 tctagcaccatctgaaatcggttat 75
||||||||||| |||||||||||||
Sbjct: 52 tctagcaccatttgaaatcggttat 76
>31805_mmu-mir-29c:mirbase
Length = 88
Score = 42.1 bits (21), Expect = 6e-05
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 51 tctagcaccatctgaaatcggttat 75
||||||||||| |||||||||||||
Sbjct: 52 tctagcaccatttgaaatcggttat 76
>32686_rno-mir-29c:mirbase
Length = 88
Score = 42.1 bits (21), Expect = 6e-05
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 51 tctagcaccatctgaaatcggttat 75
||||||||||| |||||||||||||
Sbjct: 52 tctagcaccatttgaaatcggttat 76
>33045_rno-mir-3556b:mirbase
Length = 107
Score = 42.1 bits (21), Expect = 6e-05
Identities = 24/25 (96%)
Strand = Plus / Minus
Query: 51 tctagcaccatctgaaatcggttat 75
||||||||||| |||||||||||||
Sbjct: 48 tctagcaccatttgaaatcggttat 24
>33161_bta-mir-29c:mirbase
Length = 88
Score = 42.1 bits (21), Expect = 6e-05
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 51 tctagcaccatctgaaatcggttat 75
||||||||||| |||||||||||||
Sbjct: 52 tctagcaccatttgaaatcggttat 76
>33937_ssc-mir-29c:mirbase
Length = 88
Score = 42.1 bits (21), Expect = 6e-05
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 51 tctagcaccatctgaaatcggttat 75
||||||||||| |||||||||||||
Sbjct: 52 tctagcaccatttgaaatcggttat 76
>26652_cfa-mir-29c-2:mirbase
Length = 58
Score = 40.1 bits (20), Expect = 2e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 51 tctagcaccatctgaaatcggtta 74
||||||||||| ||||||||||||
Sbjct: 35 tctagcaccatttgaaatcggtta 58
>26651_cfa-mir-29c-1:mirbase
Length = 58
Score = 40.1 bits (20), Expect = 2e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 51 tctagcaccatctgaaatcggtta 74
||||||||||| ||||||||||||
Sbjct: 35 tctagcaccatttgaaatcggtta 58
