miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>33941_ssc-mir-30b:mirbase
Length = 76
Score = 151 bits (76), Expect = 8e-38
Identities = 76/76 (100%)
Strand = Plus / Plus
Query: 1 tttcagttcgtgtaaacatcctacactcagctgtaatacatggattggctgggaggtgga 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 tttcagttcgtgtaaacatcctacactcagctgtaatacatggattggctgggaggtgga 60
Query: 61 tgtttacttcagctga 76
||||||||||||||||
Sbjct: 61 tgtttacttcagctga 76
>27682_mml-mir-30b:mirbase
Length = 88
Score = 143 bits (72), Expect = 2e-35
Identities = 75/76 (98%)
Strand = Plus / Plus
Query: 1 tttcagttcgtgtaaacatcctacactcagctgtaatacatggattggctgggaggtgga 60
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7 tttcagttcatgtaaacatcctacactcagctgtaatacatggattggctgggaggtgga 66
Query: 61 tgtttacttcagctga 76
||||||||||||||||
Sbjct: 67 tgtttacttcagctga 82
>28191_mne-mir-30b:mirbase
Length = 88
Score = 143 bits (72), Expect = 2e-35
Identities = 75/76 (98%)
Strand = Plus / Plus
Query: 1 tttcagttcgtgtaaacatcctacactcagctgtaatacatggattggctgggaggtgga 60
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7 tttcagttcatgtaaacatcctacactcagctgtaatacatggattggctgggaggtgga 66
Query: 61 tgtttacttcagctga 76
||||||||||||||||
Sbjct: 67 tgtttacttcagctga 82
>28392_hsa-mir-30b:mirbase
Length = 88
Score = 143 bits (72), Expect = 2e-35
Identities = 75/76 (98%)
Strand = Plus / Plus
Query: 1 tttcagttcgtgtaaacatcctacactcagctgtaatacatggattggctgggaggtgga 60
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7 tttcagttcatgtaaacatcctacactcagctgtaatacatggattggctgggaggtgga 66
Query: 61 tgtttacttcagctga 76
||||||||||||||||
Sbjct: 67 tgtttacttcagctga 82
>30067_ppa-mir-30b:mirbase
Length = 88
Score = 143 bits (72), Expect = 2e-35
Identities = 75/76 (98%)
Strand = Plus / Plus
Query: 1 tttcagttcgtgtaaacatcctacactcagctgtaatacatggattggctgggaggtgga 60
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7 tttcagttcatgtaaacatcctacactcagctgtaatacatggattggctgggaggtgga 66
Query: 61 tgtttacttcagctga 76
||||||||||||||||
Sbjct: 67 tgtttacttcagctga 82
>30178_ptr-mir-30b:mirbase
Length = 88
Score = 143 bits (72), Expect = 2e-35
Identities = 75/76 (98%)
Strand = Plus / Plus
Query: 1 tttcagttcgtgtaaacatcctacactcagctgtaatacatggattggctgggaggtgga 60
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7 tttcagttcatgtaaacatcctacactcagctgtaatacatggattggctgggaggtgga 66
Query: 61 tgtttacttcagctga 76
||||||||||||||||
Sbjct: 67 tgtttacttcagctga 82
>30783_ppy-mir-30b:mirbase
Length = 88
Score = 143 bits (72), Expect = 2e-35
Identities = 75/76 (98%)
Strand = Plus / Plus
Query: 1 tttcagttcgtgtaaacatcctacactcagctgtaatacatggattggctgggaggtgga 60
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7 tttcagttcatgtaaacatcctacactcagctgtaatacatggattggctgggaggtgga 66
Query: 61 tgtttacttcagctga 76
||||||||||||||||
Sbjct: 67 tgtttacttcagctga 82
>28280_ggo-mir-30b:mirbase
Length = 88
Score = 137 bits (69), Expect = 1e-33
Identities = 72/73 (98%)
Strand = Plus / Plus
Query: 4 cagttcgtgtaaacatcctacactcagctgtaatacatggattggctgggaggtggatgt 63
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10 cagttcatgtaaacatcctacactcagctgtaatacatggattggctgggaggtggatgt 69
Query: 64 ttacttcagctga 76
|||||||||||||
Sbjct: 70 ttacttcagctga 82
>27495_age-mir-30b:mirbase
Length = 88
Score = 135 bits (68), Expect = 5e-33
Identities = 74/76 (97%)
Strand = Plus / Plus
Query: 1 tttcagttcgtgtaaacatcctacactcagctgtaatacatggattggctgggaggtgga 60
||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 7 tttcagttcatgtaaacatcctacactcagctgtaatacatggattggctgagaggtgga 66
Query: 61 tgtttacttcagctga 76
||||||||||||||||
Sbjct: 67 tgtttacttcagctga 82
>27555_lla-mir-30b:mirbase
Length = 88
Score = 135 bits (68), Expect = 5e-33
Identities = 74/76 (97%)
Strand = Plus / Plus
Query: 1 tttcagttcgtgtaaacatcctacactcagctgtaatacatggattggctgggaggtgga 60
||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 7 tttcagttcatgtaaacatcctacactcagctgtaatacatggattggctgagaggtgga 66
Query: 61 tgtttacttcagctga 76
||||||||||||||||
Sbjct: 67 tgtttacttcagctga 82
>26654_cfa-mir-30b:mirbase
Length = 60
Score = 111 bits (56), Expect = 7e-26
Identities = 59/60 (98%)
Strand = Plus / Plus
Query: 11 tgtaaacatcctacactcagctgtaatacatggattggctgggaggtggatgtttacttc 70
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 1 tgtaaacatcctacactcagctgtagtacatggattggctgggaggtggatgtttacttc 60
>26975_eca-mir-30b:mirbase
Length = 58
Score = 107 bits (54), Expect = 1e-24
Identities = 57/58 (98%)
Strand = Plus / Plus
Query: 11 tgtaaacatcctacactcagctgtaatacatggattggctgggaggtggatgtttact 68
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 1 tgtaaacatcctacactcagctgtactacatggattggctgggaggtggatgtttact 58
>33165_bta-mir-30b:mirbase
Length = 88
Score = 103 bits (52), Expect = 2e-23
Identities = 70/76 (92%)
Strand = Plus / Plus
Query: 1 tttcagttcgtgtaaacatcctacactcagctgtaatacatggattggctgggaggtgga 60
||||||||| |||||||||||||||||||||||||| ||| | | ||||||||||||||
Sbjct: 7 tttcagttcatgtaaacatcctacactcagctgtaacacacgagtcggctgggaggtgga 66
Query: 61 tgtttacttcagctga 76
||||||||||||||||
Sbjct: 67 tgtttacttcagctga 82
>33166_bta-mir-30b:mirbase
Length = 88
Score = 103 bits (52), Expect = 2e-23
Identities = 70/76 (92%)
Strand = Plus / Plus
Query: 1 tttcagttcgtgtaaacatcctacactcagctgtaatacatggattggctgggaggtgga 60
||||||||| |||||||||||||||||||||||||| ||| | | ||||||||||||||
Sbjct: 7 tttcagttcatgtaaacatcctacactcagctgtaacacacgagtcggctgggaggtgga 66
Query: 61 tgtttacttcagctga 76
||||||||||||||||
Sbjct: 67 tgtttacttcagctga 82
>31807_mmu-mir-30b:mirbase
Length = 96
Score = 101 bits (51), Expect = 7e-23
Identities = 69/75 (92%)
Strand = Plus / Plus
Query: 1 tttcagttcgtgtaaacatcctacactcagctgtaatacatggattggctgggaggtgga 60
||||||||| |||||||||||||||||||||||| ||||||| |||||||||| |||||
Sbjct: 11 tttcagttcatgtaaacatcctacactcagctgtcatacatgcgttggctgggatgtgga 70
Query: 61 tgtttacttcagctg 75
||||||| |||||||
Sbjct: 71 tgtttacgtcagctg 85
>32688_rno-mir-30b:mirbase
Length = 87
Score = 101 bits (51), Expect = 7e-23
Identities = 69/75 (92%)
Strand = Plus / Plus
Query: 1 tttcagttcgtgtaaacatcctacactcagctgtaatacatggattggctgggaggtgga 60
||||||||| |||||||||||||||||||||||| ||||||| |||||||||| |||||
Sbjct: 6 tttcagttcatgtaaacatcctacactcagctgtcatacatgagttggctgggatgtgga 65
Query: 61 tgtttacttcagctg 75
||||||| |||||||
Sbjct: 66 tgtttacgtcagctg 80
>32689_rno-mir-30b:mirbase
Length = 87
Score = 101 bits (51), Expect = 7e-23
Identities = 69/75 (92%)
Strand = Plus / Plus
Query: 1 tttcagttcgtgtaaacatcctacactcagctgtaatacatggattggctgggaggtgga 60
||||||||| |||||||||||||||||||||||| ||||||| |||||||||| |||||
Sbjct: 6 tttcagttcatgtaaacatcctacactcagctgtcatacatgagttggctgggatgtgga 65
Query: 61 tgtttacttcagctg 75
||||||| |||||||
Sbjct: 66 tgtttacgtcagctg 80
>25917_gga-mir-30b:mirbase
Length = 87
Score = 63.9 bits (32), Expect = 1e-11
Identities = 62/72 (86%)
Strand = Plus / Plus
Query: 5 agttcgtgtaaacatcctacactcagctgtaatacatggattggctgggaggtggatgtt 64
||||| |||||||||||||||||||||| ||| | ||| ||||||| ||||||||||
Sbjct: 10 agttcctgtaaacatcctacactcagctataacaagtggtagggctggggggtggatgtt 69
Query: 65 tacttcagctga 76
||||||| ||||
Sbjct: 70 tacttcaactga 81
>34573_fru-mir-30b:mirbase
Length = 90
Score = 56.0 bits (28), Expect = 4e-09
Identities = 31/32 (96%)
Strand = Plus / Plus
Query: 3 tcagttcgtgtaaacatcctacactcagctgt 34
|||||| |||||||||||||||||||||||||
Sbjct: 8 tcagttggtgtaaacatcctacactcagctgt 39
>31451_oan-mir-30b:mirbase
Length = 111
Score = 52.0 bits (26), Expect = 6e-08
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 5 agttcgtgtaaacatcctacactcagctgt 34
||||| ||||||||||||||||||||||||
Sbjct: 23 agttcatgtaaacatcctacactcagctgt 52
>34720_tni-mir-30b:mirbase
Length = 81
Score = 50.1 bits (25), Expect = 2e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 10 gtgtaaacatcctacactcagctgt 34
|||||||||||||||||||||||||
Sbjct: 6 gtgtaaacatcctacactcagctgt 30
>34248_dre-mir-30b:mirbase
Length = 88
Score = 48.1 bits (24), Expect = 9e-07
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 11 tgtaaacatcctacactcagctgt 34
||||||||||||||||||||||||
Sbjct: 16 tgtaaacatcctacactcagctgt 39
>25733_xtr-mir-30b:mirbase
Length = 80
Score = 44.1 bits (22), Expect = 1e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 11 tgtaaacatcctacactcagct 32
||||||||||||||||||||||
Sbjct: 12 tgtaaacatcctacactcagct 33
>25918_gga-mir-30c-1:mirbase
Length = 89
Score = 40.1 bits (20), Expect = 2e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 9 cgtgtaaacatcctacactc 28
||||||||||||||||||||
Sbjct: 15 cgtgtaaacatcctacactc 34
>33942_ssc-mir-30c-1:mirbase
Length = 80
Score = 40.1 bits (20), Expect = 2e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 9 cgtgtaaacatcctacactc 28
||||||||||||||||||||
Sbjct: 8 cgtgtaaacatcctacactc 27
>26976_eca-mir-30c:mirbase
Length = 89
Score = 38.2 bits (19), Expect = 8e-04
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 10 gtgtaaacatcctacactc 28
|||||||||||||||||||
Sbjct: 16 gtgtaaacatcctacactc 34
>27683_mml-mir-30c-1:mirbase
Length = 89
Score = 38.2 bits (19), Expect = 8e-04
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 10 gtgtaaacatcctacactc 28
|||||||||||||||||||
Sbjct: 16 gtgtaaacatcctacactc 34
>28393_hsa-mir-30c-1:mirbase
Length = 89
Score = 38.2 bits (19), Expect = 8e-04
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 10 gtgtaaacatcctacactc 28
|||||||||||||||||||
Sbjct: 16 gtgtaaacatcctacactc 34
>30179_ptr-mir-30c-1:mirbase
Length = 88
Score = 38.2 bits (19), Expect = 8e-04
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 10 gtgtaaacatcctacactc 28
|||||||||||||||||||
Sbjct: 15 gtgtaaacatcctacactc 33
>30784_ppy-mir-30c-1:mirbase
Length = 89
Score = 38.2 bits (19), Expect = 8e-04
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 10 gtgtaaacatcctacactc 28
|||||||||||||||||||
Sbjct: 16 gtgtaaacatcctacactc 34
>31808_mmu-mir-30c-1:mirbase
Length = 89
Score = 38.2 bits (19), Expect = 8e-04
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 10 gtgtaaacatcctacactc 28
|||||||||||||||||||
Sbjct: 16 gtgtaaacatcctacactc 34
>32690_rno-mir-30c-1:mirbase
Length = 89
Score = 38.2 bits (19), Expect = 8e-04
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 10 gtgtaaacatcctacactc 28
|||||||||||||||||||
Sbjct: 16 gtgtaaacatcctacactc 34
>33167_bta-mir-30c:mirbase
Length = 105
Score = 38.2 bits (19), Expect = 8e-04
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 10 gtgtaaacatcctacactc 28
|||||||||||||||||||
Sbjct: 25 gtgtaaacatcctacactc 43
>34249_dre-mir-30c:mirbase
Length = 79
Score = 38.2 bits (19), Expect = 8e-04
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 10 gtgtaaacatcctacactc 28
|||||||||||||||||||
Sbjct: 10 gtgtaaacatcctacactc 28
>34574_fru-mir-30c:mirbase
Length = 78
Score = 38.2 bits (19), Expect = 8e-04
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 10 gtgtaaacatcctacactc 28
|||||||||||||||||||
Sbjct: 8 gtgtaaacatcctacactc 26
>34721_tni-mir-30c:mirbase
Length = 79
Score = 38.2 bits (19), Expect = 8e-04
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 10 gtgtaaacatcctacactc 28
|||||||||||||||||||
Sbjct: 9 gtgtaaacatcctacactc 27
