miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>33167_bta-mir-30c:mirbase
Length = 105
Score = 151 bits (76), Expect = 9e-38
Identities = 79/80 (98%)
Strand = Plus / Plus
Query: 1 cgtagtgcgtgtaaacatcctacactctcagctgtgagctcgaggtggctgggagagggt 60
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 17 cgtagtgtgtgtaaacatcctacactctcagctgtgagctcgaggtggctgggagagggt 76
Query: 61 tgtttactccttctgccatg 80
||||||||||||||||||||
Sbjct: 77 tgtttactccttctgccatg 96
>26976_eca-mir-30c:mirbase
Length = 89
Score = 141 bits (71), Expect = 8e-35
Identities = 77/79 (97%)
Strand = Plus / Plus
Query: 2 gtagtgcgtgtaaacatcctacactctcagctgtgagctcgaggtggctgggagagggtt 61
|||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 9 gtagtgtgtgtaaacatcctacactctcagctgtgagctcaaggtggctgggagagggtt 68
Query: 62 gtttactccttctgccatg 80
|||||||||||||||||||
Sbjct: 69 gtttactccttctgccatg 87
>27683_mml-mir-30c-1:mirbase
Length = 89
Score = 141 bits (71), Expect = 8e-35
Identities = 77/79 (97%)
Strand = Plus / Plus
Query: 2 gtagtgcgtgtaaacatcctacactctcagctgtgagctcgaggtggctgggagagggtt 61
|||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 9 gtagtgtgtgtaaacatcctacactctcagctgtgagctcaaggtggctgggagagggtt 68
Query: 62 gtttactccttctgccatg 80
|||||||||||||||||||
Sbjct: 69 gtttactccttctgccatg 87
>28393_hsa-mir-30c-1:mirbase
Length = 89
Score = 141 bits (71), Expect = 8e-35
Identities = 77/79 (97%)
Strand = Plus / Plus
Query: 2 gtagtgcgtgtaaacatcctacactctcagctgtgagctcgaggtggctgggagagggtt 61
|||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 9 gtagtgtgtgtaaacatcctacactctcagctgtgagctcaaggtggctgggagagggtt 68
Query: 62 gtttactccttctgccatg 80
|||||||||||||||||||
Sbjct: 69 gtttactccttctgccatg 87
>30179_ptr-mir-30c-1:mirbase
Length = 88
Score = 141 bits (71), Expect = 8e-35
Identities = 77/79 (97%)
Strand = Plus / Plus
Query: 2 gtagtgcgtgtaaacatcctacactctcagctgtgagctcgaggtggctgggagagggtt 61
|||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 8 gtagtgtgtgtaaacatcctacactctcagctgtgagctcaaggtggctgggagagggtt 67
Query: 62 gtttactccttctgccatg 80
|||||||||||||||||||
Sbjct: 68 gtttactccttctgccatg 86
>30784_ppy-mir-30c-1:mirbase
Length = 89
Score = 141 bits (71), Expect = 8e-35
Identities = 77/79 (97%)
Strand = Plus / Plus
Query: 2 gtagtgcgtgtaaacatcctacactctcagctgtgagctcgaggtggctgggagagggtt 61
|||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 9 gtagtgtgtgtaaacatcctacactctcagctgtgagctcaaggtggctgggagagggtt 68
Query: 62 gtttactccttctgccatg 80
|||||||||||||||||||
Sbjct: 69 gtttactccttctgccatg 87
>31808_mmu-mir-30c-1:mirbase
Length = 89
Score = 141 bits (71), Expect = 8e-35
Identities = 77/79 (97%)
Strand = Plus / Plus
Query: 2 gtagtgcgtgtaaacatcctacactctcagctgtgagctcgaggtggctgggagagggtt 61
|||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 9 gtagtgtgtgtaaacatcctacactctcagctgtgagctcaaggtggctgggagagggtt 68
Query: 62 gtttactccttctgccatg 80
|||||||||||||||||||
Sbjct: 69 gtttactccttctgccatg 87
>32690_rno-mir-30c-1:mirbase
Length = 89
Score = 141 bits (71), Expect = 8e-35
Identities = 77/79 (97%)
Strand = Plus / Plus
Query: 2 gtagtgcgtgtaaacatcctacactctcagctgtgagctcgaggtggctgggagagggtt 61
|||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 9 gtagtgtgtgtaaacatcctacactctcagctgtgagctcaaggtggctgggagagggtt 68
Query: 62 gtttactccttctgccatg 80
|||||||||||||||||||
Sbjct: 69 gtttactccttctgccatg 87
>25918_gga-mir-30c-1:mirbase
Length = 89
Score = 121 bits (61), Expect = 8e-29
Identities = 70/73 (95%)
Strand = Plus / Plus
Query: 8 cgtgtaaacatcctacactctcagctgtgagctcgaggtggctgggagagggttgtttac 67
|||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||
Sbjct: 15 cgtgtaaacatcctacactctcagctgtgaactcgaggtggctgggagaggattgtttac 74
Query: 68 tccttctgccatg 80
||||||||||||
Sbjct: 75 gccttctgccatg 87
>26655_cfa-mir-30c-1:mirbase
Length = 61
Score = 113 bits (57), Expect = 2e-26
Identities = 60/61 (98%)
Strand = Plus / Plus
Query: 10 tgtaaacatcctacactctcagctgtgagctcgaggtggctgggagagggttgtttactc 69
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 1 tgtaaacatcctacactctcagctgtgagctcaaggtggctgggagagggttgtttactc 60
Query: 70 c 70
|
Sbjct: 61 c 61
>25734_xtr-mir-30c-1:mirbase
Length = 89
Score = 77.8 bits (39), Expect = 1e-15
Identities = 63/71 (88%)
Strand = Plus / Plus
Query: 10 tgtaaacatcctacactctcagctgtgagctcgaggtggctgggagagggttgtttactc 69
|||||||||||||||||||||||||||| | |||||||||||||| || |||||||||
Sbjct: 17 tgtaaacatcctacactctcagctgtgaacataaggtggctgggagaagggtgtttactc 76
Query: 70 cttctgccatg 80
| ||||||||
Sbjct: 77 cccctgccatg 87
>31809_mmu-mir-30c-2:mirbase
Length = 84
Score = 56.0 bits (28), Expect = 4e-09
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 10 tgtaaacatcctacactctcagctgtga 37
||||||||||||||||||||||||||||
Sbjct: 14 tgtaaacatcctacactctcagctgtga 41
>32691_rno-mir-30c-2:mirbase
Length = 84
Score = 56.0 bits (28), Expect = 4e-09
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 10 tgtaaacatcctacactctcagctgtga 37
||||||||||||||||||||||||||||
Sbjct: 14 tgtaaacatcctacactctcagctgtga 41
>25735_xtr-mir-30c-2:mirbase
Length = 78
Score = 54.0 bits (27), Expect = 2e-08
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 10 tgtaaacatcctacactctcagctgtg 36
|||||||||||||||||||||||||||
Sbjct: 14 tgtaaacatcctacactctcagctgtg 40
>25919_gga-mir-30c-2:mirbase
Length = 72
Score = 54.0 bits (27), Expect = 2e-08
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 10 tgtaaacatcctacactctcagctgtg 36
|||||||||||||||||||||||||||
Sbjct: 7 tgtaaacatcctacactctcagctgtg 33
>26425_tgu-mir-30c:mirbase
Length = 72
Score = 54.0 bits (27), Expect = 2e-08
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 10 tgtaaacatcctacactctcagctgtg 36
|||||||||||||||||||||||||||
Sbjct: 1 tgtaaacatcctacactctcagctgtg 27
>26426_tgu-mir-30c:mirbase
Length = 72
Score = 54.0 bits (27), Expect = 2e-08
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 10 tgtaaacatcctacactctcagctgtg 36
|||||||||||||||||||||||||||
Sbjct: 1 tgtaaacatcctacactctcagctgtg 27
>26656_cfa-mir-30c-2:mirbase
Length = 62
Score = 54.0 bits (27), Expect = 2e-08
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 10 tgtaaacatcctacactctcagctgtg 36
|||||||||||||||||||||||||||
Sbjct: 1 tgtaaacatcctacactctcagctgtg 27
>26977_eca-mir-30c-2:mirbase
Length = 60
Score = 54.0 bits (27), Expect = 2e-08
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 10 tgtaaacatcctacactctcagctgtg 36
|||||||||||||||||||||||||||
Sbjct: 1 tgtaaacatcctacactctcagctgtg 27
>27556_lla-mir-30c:mirbase
Length = 72
Score = 54.0 bits (27), Expect = 2e-08
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 10 tgtaaacatcctacactctcagctgtg 36
|||||||||||||||||||||||||||
Sbjct: 7 tgtaaacatcctacactctcagctgtg 33
>27684_mml-mir-30c-2:mirbase
Length = 72
Score = 54.0 bits (27), Expect = 2e-08
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 10 tgtaaacatcctacactctcagctgtg 36
|||||||||||||||||||||||||||
Sbjct: 7 tgtaaacatcctacactctcagctgtg 33
>28192_mne-mir-30c:mirbase
Length = 72
Score = 54.0 bits (27), Expect = 2e-08
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 10 tgtaaacatcctacactctcagctgtg 36
|||||||||||||||||||||||||||
Sbjct: 7 tgtaaacatcctacactctcagctgtg 33
>28394_hsa-mir-30c-2:mirbase
Length = 72
Score = 54.0 bits (27), Expect = 2e-08
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 10 tgtaaacatcctacactctcagctgtg 36
|||||||||||||||||||||||||||
Sbjct: 7 tgtaaacatcctacactctcagctgtg 33
>30180_ptr-mir-30c-2:mirbase
Length = 72
Score = 54.0 bits (27), Expect = 2e-08
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 10 tgtaaacatcctacactctcagctgtg 36
|||||||||||||||||||||||||||
Sbjct: 7 tgtaaacatcctacactctcagctgtg 33
>33943_ssc-mir-30c-2:mirbase
Length = 80
Score = 54.0 bits (27), Expect = 2e-08
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 10 tgtaaacatcctacactctcagctgtg 36
|||||||||||||||||||||||||||
Sbjct: 10 tgtaaacatcctacactctcagctgtg 36
>25462_pma-mir-30g:mirbase
Length = 83
Score = 52.0 bits (26), Expect = 6e-08
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 9 gtgtaaacatcctacactctcagctgtgag 38
||||||||||||| ||||||||||||||||
Sbjct: 11 gtgtaaacatccttcactctcagctgtgag 40
>31452_oan-mir-30c:mirbase
Length = 122
Score = 52.0 bits (26), Expect = 6e-08
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 10 tgtaaacatcctacactctcagctgt 35
||||||||||||||||||||||||||
Sbjct: 31 tgtaaacatcctacactctcagctgt 56
>34249_dre-mir-30c:mirbase
Length = 79
Score = 52.0 bits (26), Expect = 6e-08
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 9 gtgtaaacatcctacactctcagctg 34
||||||||||||||||||||||||||
Sbjct: 10 gtgtaaacatcctacactctcagctg 35
>25460_pma-mir-30f-1:mirbase
Length = 78
Score = 46.1 bits (23), Expect = 4e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 10 tgtaaacatcctacactctcagctgtg 36
|||||||| ||||||||||||||||||
Sbjct: 10 tgtaaacaccctacactctcagctgtg 36
>33170_bta-mir-30f:mirbase
Length = 84
Score = 46.1 bits (23), Expect = 4e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 10 tgtaaacatcctacactctcagctgtg 36
|||||||| ||||||||||||||||||
Sbjct: 14 tgtaaacaccctacactctcagctgtg 40
>25461_pma-mir-30f-2:mirbase
Length = 81
Score = 44.1 bits (22), Expect = 1e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 9 gtgtaaacatcctacactctcagctg 34
||||||||| ||||||||||||||||
Sbjct: 10 gtgtaaacaccctacactctcagctg 35
>34574_fru-mir-30c:mirbase
Length = 78
Score = 42.1 bits (21), Expect = 6e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 9 gtgtaaacatcctacactctc 29
|||||||||||||||||||||
Sbjct: 8 gtgtaaacatcctacactctc 28
>34721_tni-mir-30c:mirbase
Length = 79
Score = 42.1 bits (21), Expect = 6e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 9 gtgtaaacatcctacactctc 29
|||||||||||||||||||||
Sbjct: 9 gtgtaaacatcctacactctc 29
>33940_ssc-mir-30b:mirbase
Length = 76
Score = 40.1 bits (20), Expect = 2e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 8 cgtgtaaacatcctacactc 27
||||||||||||||||||||
Sbjct: 9 cgtgtaaacatcctacactc 28
>33941_ssc-mir-30b:mirbase
Length = 76
Score = 40.1 bits (20), Expect = 2e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 8 cgtgtaaacatcctacactc 27
||||||||||||||||||||
Sbjct: 9 cgtgtaaacatcctacactc 28
>34248_dre-mir-30b:mirbase
Length = 88
Score = 40.1 bits (20), Expect = 2e-04
Identities = 29/31 (93%), Gaps = 2/31 (6%)
Strand = Plus / Plus
Query: 10 tgtaaacatcctacactctcagctgtgagct 40
||||||||||||||| ||||||||||||||
Sbjct: 16 tgtaaacatcctaca--ctcagctgtgagct 44
>34573_fru-mir-30b:mirbase
Length = 90
Score = 38.2 bits (19), Expect = 9e-04
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 9 gtgtaaacatcctacactc 27
|||||||||||||||||||
Sbjct: 15 gtgtaaacatcctacactc 33
>34720_tni-mir-30b:mirbase
Length = 81
Score = 38.2 bits (19), Expect = 9e-04
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 9 gtgtaaacatcctacactc 27
|||||||||||||||||||
Sbjct: 6 gtgtaaacatcctacactc 24
