miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>32691_rno-mir-30c-2:mirbase
Length = 84
Score = 151 bits (76), Expect = 9e-38
Identities = 79/80 (98%)
Strand = Plus / Plus
Query: 1 gacagatactgtaaacatcctacactctcagctgtggaaagtaagaaagctgggagaagg 60
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 5 gacagatactgtaaacatcctacactctcagctgtgaaaagtaagaaagctgggagaagg 64
Query: 61 ctgtttactctctctgcctt 80
||||||||||||||||||||
Sbjct: 65 ctgtttactctctctgcctt 84
>27684_mml-mir-30c-2:mirbase
Length = 72
Score = 143 bits (72), Expect = 2e-35
Identities = 72/72 (100%)
Strand = Plus / Plus
Query: 4 agatactgtaaacatcctacactctcagctgtggaaagtaagaaagctgggagaaggctg 63
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 agatactgtaaacatcctacactctcagctgtggaaagtaagaaagctgggagaaggctg 60
Query: 64 tttactctctct 75
||||||||||||
Sbjct: 61 tttactctctct 72
>31809_mmu-mir-30c-2:mirbase
Length = 84
Score = 143 bits (72), Expect = 2e-35
Identities = 78/80 (97%)
Strand = Plus / Plus
Query: 1 gacagatactgtaaacatcctacactctcagctgtggaaagtaagaaagctgggagaagg 60
|||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 5 gacagatattgtaaacatcctacactctcagctgtgaaaagtaagaaagctgggagaagg 64
Query: 61 ctgtttactctctctgcctt 80
||||||||||||||||||||
Sbjct: 65 ctgtttactctctctgcctt 84
>27556_lla-mir-30c:mirbase
Length = 72
Score = 135 bits (68), Expect = 5e-33
Identities = 68/68 (100%)
Strand = Plus / Plus
Query: 4 agatactgtaaacatcctacactctcagctgtggaaagtaagaaagctgggagaaggctg 63
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 agatactgtaaacatcctacactctcagctgtggaaagtaagaaagctgggagaaggctg 60
Query: 64 tttactct 71
||||||||
Sbjct: 61 tttactct 68
>28192_mne-mir-30c:mirbase
Length = 72
Score = 135 bits (68), Expect = 5e-33
Identities = 68/68 (100%)
Strand = Plus / Plus
Query: 4 agatactgtaaacatcctacactctcagctgtggaaagtaagaaagctgggagaaggctg 63
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 agatactgtaaacatcctacactctcagctgtggaaagtaagaaagctgggagaaggctg 60
Query: 64 tttactct 71
||||||||
Sbjct: 61 tttactct 68
>28394_hsa-mir-30c-2:mirbase
Length = 72
Score = 135 bits (68), Expect = 5e-33
Identities = 68/68 (100%)
Strand = Plus / Plus
Query: 4 agatactgtaaacatcctacactctcagctgtggaaagtaagaaagctgggagaaggctg 63
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 agatactgtaaacatcctacactctcagctgtggaaagtaagaaagctgggagaaggctg 60
Query: 64 tttactct 71
||||||||
Sbjct: 61 tttactct 68
>30180_ptr-mir-30c-2:mirbase
Length = 72
Score = 135 bits (68), Expect = 5e-33
Identities = 68/68 (100%)
Strand = Plus / Plus
Query: 4 agatactgtaaacatcctacactctcagctgtggaaagtaagaaagctgggagaaggctg 63
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 agatactgtaaacatcctacactctcagctgtggaaagtaagaaagctgggagaaggctg 60
Query: 64 tttactct 71
||||||||
Sbjct: 61 tttactct 68
>26425_tgu-mir-30c:mirbase
Length = 72
Score = 133 bits (67), Expect = 2e-32
Identities = 70/71 (98%)
Strand = Plus / Plus
Query: 10 tgtaaacatcctacactctcagctgtggaaagtaagaaagctgggagaaggctgtttact 69
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 1 tgtaaacatcctacactctcagctgtggaaactaagaaagctgggagaaggctgtttact 60
Query: 70 ctctctgcctt 80
|||||||||||
Sbjct: 61 ctctctgcctt 71
>26426_tgu-mir-30c:mirbase
Length = 72
Score = 133 bits (67), Expect = 2e-32
Identities = 70/71 (98%)
Strand = Plus / Plus
Query: 10 tgtaaacatcctacactctcagctgtggaaagtaagaaagctgggagaaggctgtttact 69
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 1 tgtaaacatcctacactctcagctgtggaaactaagaaagctgggagaaggctgtttact 60
Query: 70 ctctctgcctt 80
|||||||||||
Sbjct: 61 ctctctgcctt 71
>25919_gga-mir-30c-2:mirbase
Length = 72
Score = 123 bits (62), Expect = 2e-29
Identities = 65/66 (98%)
Strand = Plus / Plus
Query: 7 tactgtaaacatcctacactctcagctgtggaaagtaagaaagctgggagaaggctgttt 66
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 4 tactgtaaacatcctacactctcagctgtggaaactaagaaagctgggagaaggctgttt 63
Query: 67 actctc 72
||||||
Sbjct: 64 actctc 69
>26656_cfa-mir-30c-2:mirbase
Length = 62
Score = 123 bits (62), Expect = 2e-29
Identities = 62/62 (100%)
Strand = Plus / Plus
Query: 10 tgtaaacatcctacactctcagctgtggaaagtaagaaagctgggagaaggctgtttact 69
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 tgtaaacatcctacactctcagctgtggaaagtaagaaagctgggagaaggctgtttact 60
Query: 70 ct 71
||
Sbjct: 61 ct 62
>33170_bta-mir-30f:mirbase
Length = 84
Score = 123 bits (62), Expect = 2e-29
Identities = 74/78 (94%)
Strand = Plus / Plus
Query: 3 cagatactgtaaacatcctacactctcagctgtggaaagtaagaaagctgggagaaggct 62
||||||||||||||| |||||||||||||||||| | ||| |||||||||||||||||||
Sbjct: 7 cagatactgtaaacaccctacactctcagctgtgcacagtgagaaagctgggagaaggct 66
Query: 63 gtttactctctctgcctt 80
||||||||||||||||||
Sbjct: 67 gtttactctctctgcctt 84
>26977_eca-mir-30c-2:mirbase
Length = 60
Score = 111 bits (56), Expect = 7e-26
Identities = 59/60 (98%)
Strand = Plus / Plus
Query: 10 tgtaaacatcctacactctcagctgtggaaagtaagaaagctgggagaaggctgtttact 69
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 1 tgtaaacatcctacactctcagctgtggaaagtgagaaagctgggagaaggctgtttact 60
>31452_oan-mir-30c:mirbase
Length = 122
Score = 111 bits (56), Expect = 7e-26
Identities = 75/80 (93%), Gaps = 1/80 (1%)
Strand = Plus / Plus
Query: 1 gacagatactgtaaacatcctacactctcagctgtggaaagtaagaaagctgggagaagg 60
||||| ||||||||||||||||||||||||||||| || || |||||||||||||||||
Sbjct: 22 gacaggtactgtaaacatcctacactctcagctgtagat-gtgagaaagctgggagaagg 80
Query: 61 ctgtttactctctctgcctt 80
||||||||||||||||||||
Sbjct: 81 ctgtttactctctctgcctt 100
>25735_xtr-mir-30c-2:mirbase
Length = 78
Score = 105 bits (53), Expect = 5e-24
Identities = 71/76 (93%), Gaps = 2/76 (2%)
Strand = Plus / Plus
Query: 1 gacagatactgtaaacatcctacactctcagctgtggaaagtaagaaagctgggagaagg 60
|||||||||||||||||||||||||||||||||||||||| | ||||||||| |||||
Sbjct: 5 gacagatactgtaaacatcctacactctcagctgtggaaa--tacaaagctgggggaagg 62
Query: 61 ctgtttactctctctg 76
||||||||||||||||
Sbjct: 63 ctgtttactctctctg 78
>25734_xtr-mir-30c-1:mirbase
Length = 89
Score = 58.0 bits (29), Expect = 1e-09
Identities = 54/61 (88%), Gaps = 1/61 (1%)
Strand = Plus / Plus
Query: 10 tgtaaacatcctacactctcagctgtggaaagtaagaaagctgggagaaggctgtttact 69
||||||||||||||||||||||||||| | | |||| |||||||||||| ||||||||
Sbjct: 17 tgtaaacatcctacactctcagctgtgaaca-taaggtggctgggagaagggtgtttact 75
Query: 70 c 70
|
Sbjct: 76 c 76
>25918_gga-mir-30c-1:mirbase
Length = 89
Score = 54.0 bits (27), Expect = 2e-08
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 10 tgtaaacatcctacactctcagctgtg 36
|||||||||||||||||||||||||||
Sbjct: 17 tgtaaacatcctacactctcagctgtg 43
>26655_cfa-mir-30c-1:mirbase
Length = 61
Score = 54.0 bits (27), Expect = 2e-08
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 10 tgtaaacatcctacactctcagctgtg 36
|||||||||||||||||||||||||||
Sbjct: 1 tgtaaacatcctacactctcagctgtg 27
>26976_eca-mir-30c:mirbase
Length = 89
Score = 54.0 bits (27), Expect = 2e-08
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 10 tgtaaacatcctacactctcagctgtg 36
|||||||||||||||||||||||||||
Sbjct: 17 tgtaaacatcctacactctcagctgtg 43
>27683_mml-mir-30c-1:mirbase
Length = 89
Score = 54.0 bits (27), Expect = 2e-08
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 10 tgtaaacatcctacactctcagctgtg 36
|||||||||||||||||||||||||||
Sbjct: 17 tgtaaacatcctacactctcagctgtg 43
>28393_hsa-mir-30c-1:mirbase
Length = 89
Score = 54.0 bits (27), Expect = 2e-08
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 10 tgtaaacatcctacactctcagctgtg 36
|||||||||||||||||||||||||||
Sbjct: 17 tgtaaacatcctacactctcagctgtg 43
>30179_ptr-mir-30c-1:mirbase
Length = 88
Score = 54.0 bits (27), Expect = 2e-08
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 10 tgtaaacatcctacactctcagctgtg 36
|||||||||||||||||||||||||||
Sbjct: 16 tgtaaacatcctacactctcagctgtg 42
>30784_ppy-mir-30c-1:mirbase
Length = 89
Score = 54.0 bits (27), Expect = 2e-08
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 10 tgtaaacatcctacactctcagctgtg 36
|||||||||||||||||||||||||||
Sbjct: 17 tgtaaacatcctacactctcagctgtg 43
>31808_mmu-mir-30c-1:mirbase
Length = 89
Score = 54.0 bits (27), Expect = 2e-08
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 10 tgtaaacatcctacactctcagctgtg 36
|||||||||||||||||||||||||||
Sbjct: 17 tgtaaacatcctacactctcagctgtg 43
>32690_rno-mir-30c-1:mirbase
Length = 89
Score = 54.0 bits (27), Expect = 2e-08
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 10 tgtaaacatcctacactctcagctgtg 36
|||||||||||||||||||||||||||
Sbjct: 17 tgtaaacatcctacactctcagctgtg 43
>33167_bta-mir-30c:mirbase
Length = 105
Score = 54.0 bits (27), Expect = 2e-08
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 10 tgtaaacatcctacactctcagctgtg 36
|||||||||||||||||||||||||||
Sbjct: 26 tgtaaacatcctacactctcagctgtg 52
>33942_ssc-mir-30c-1:mirbase
Length = 80
Score = 54.0 bits (27), Expect = 2e-08
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 10 tgtaaacatcctacactctcagctgtg 36
|||||||||||||||||||||||||||
Sbjct: 10 tgtaaacatcctacactctcagctgtg 36
>34249_dre-mir-30c:mirbase
Length = 79
Score = 50.1 bits (25), Expect = 2e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 10 tgtaaacatcctacactctcagctg 34
|||||||||||||||||||||||||
Sbjct: 11 tgtaaacatcctacactctcagctg 35
>25460_pma-mir-30f-1:mirbase
Length = 78
Score = 46.1 bits (23), Expect = 4e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 10 tgtaaacatcctacactctcagctgtg 36
|||||||| ||||||||||||||||||
Sbjct: 10 tgtaaacaccctacactctcagctgtg 36
>25462_pma-mir-30g:mirbase
Length = 83
Score = 46.1 bits (23), Expect = 4e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 10 tgtaaacatcctacactctcagctgtg 36
|||||||||||| ||||||||||||||
Sbjct: 12 tgtaaacatccttcactctcagctgtg 38
>25461_pma-mir-30f-2:mirbase
Length = 81
Score = 42.1 bits (21), Expect = 6e-05
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 10 tgtaaacatcctacactctcagctg 34
|||||||| ||||||||||||||||
Sbjct: 11 tgtaaacaccctacactctcagctg 35
>34574_fru-mir-30c:mirbase
Length = 78
Score = 40.1 bits (20), Expect = 2e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 10 tgtaaacatcctacactctc 29
||||||||||||||||||||
Sbjct: 9 tgtaaacatcctacactctc 28
>34721_tni-mir-30c:mirbase
Length = 79
Score = 40.1 bits (20), Expect = 2e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 10 tgtaaacatcctacactctc 29
||||||||||||||||||||
Sbjct: 10 tgtaaacatcctacactctc 29
>25917_gga-mir-30b:mirbase
Length = 87
Score = 38.2 bits (19), Expect = 9e-04
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 9 ctgtaaacatcctacactc 27
|||||||||||||||||||
Sbjct: 15 ctgtaaacatcctacactc 33
>34248_dre-mir-30b:mirbase
Length = 88
Score = 38.2 bits (19), Expect = 9e-04
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 9 ctgtaaacatcctacactc 27
|||||||||||||||||||
Sbjct: 15 ctgtaaacatcctacactc 33
