miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>33946_ssc-mir-30e:mirbase
Length = 80
Score = 159 bits (80), Expect = 4e-40
Identities = 80/80 (100%)
Strand = Plus / Plus
Query: 1 tttgccactgtaaacatccttgactggaagctgtgaggcgttcccaggagctttcagtcg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 tttgccactgtaaacatccttgactggaagctgtgaggcgttcccaggagctttcagtcg 60
Query: 61 gatgtttacagcggcaggct 80
||||||||||||||||||||
Sbjct: 61 gatgtttacagcggcaggct 80
>33169_bta-mir-30e:mirbase
Length = 92
Score = 127 bits (64), Expect = 1e-30
Identities = 76/80 (95%)
Strand = Plus / Plus
Query: 1 tttgccactgtaaacatccttgactggaagctgtgaggcgttcccaggagctttcagtcg 60
||||| |||||||||||||||||||||||||||| ||||||| | |||||||||||||||
Sbjct: 9 tttgctactgtaaacatccttgactggaagctgtaaggcgttgcaaggagctttcagtcg 68
Query: 61 gatgtttacagcggcaggct 80
||||||||||||||||||||
Sbjct: 69 gatgtttacagcggcaggct 88
>26979_eca-mir-30e:mirbase
Length = 92
Score = 119 bits (60), Expect = 3e-28
Identities = 75/80 (93%)
Strand = Plus / Plus
Query: 1 tttgccactgtaaacatccttgactggaagctgtgaggcgttcccaggagctttcagtcg 60
||||| |||||||||||||||||||||||||||| ||| |||| |||||||||||||||
Sbjct: 9 tttgctactgtaaacatccttgactggaagctgtaaggtgttcagaggagctttcagtcg 68
Query: 61 gatgtttacagcggcaggct 80
||||||||||||||||||||
Sbjct: 69 gatgtttacagcggcaggct 88
>28396_hsa-mir-30e:mirbase
Length = 92
Score = 119 bits (60), Expect = 3e-28
Identities = 75/80 (93%)
Strand = Plus / Plus
Query: 1 tttgccactgtaaacatccttgactggaagctgtgaggcgttcccaggagctttcagtcg 60
||||| |||||||||||||||||||||||||||| ||| |||| |||||||||||||||
Sbjct: 9 tttgctactgtaaacatccttgactggaagctgtaaggtgttcagaggagctttcagtcg 68
Query: 61 gatgtttacagcggcaggct 80
||||||||||||||||||||
Sbjct: 69 gatgtttacagcggcaggct 88
>30182_ptr-mir-30e:mirbase
Length = 91
Score = 119 bits (60), Expect = 3e-28
Identities = 75/80 (93%)
Strand = Plus / Plus
Query: 1 tttgccactgtaaacatccttgactggaagctgtgaggcgttcccaggagctttcagtcg 60
||||| |||||||||||||||||||||||||||| ||| |||| |||||||||||||||
Sbjct: 8 tttgctactgtaaacatccttgactggaagctgtaaggtgttcagaggagctttcagtcg 67
Query: 61 gatgtttacagcggcaggct 80
||||||||||||||||||||
Sbjct: 68 gatgtttacagcggcaggct 87
>30786_ppy-mir-30e:mirbase
Length = 92
Score = 119 bits (60), Expect = 3e-28
Identities = 75/80 (93%)
Strand = Plus / Plus
Query: 1 tttgccactgtaaacatccttgactggaagctgtgaggcgttcccaggagctttcagtcg 60
||||| |||||||||||||||||||||||||||| ||| |||| |||||||||||||||
Sbjct: 9 tttgctactgtaaacatccttgactggaagctgtaaggtgttcagaggagctttcagtcg 68
Query: 61 gatgtttacagcggcaggct 80
||||||||||||||||||||
Sbjct: 69 gatgtttacagcggcaggct 88
>27686_mml-mir-30e:mirbase
Length = 92
Score = 115 bits (58), Expect = 5e-27
Identities = 70/74 (94%)
Strand = Plus / Plus
Query: 7 actgtaaacatccttgactggaagctgtgaggcgttcccaggagctttcagtcggatgtt 66
|||||||||||||||||||||||||||| ||| |||| |||||||||||||||||||||
Sbjct: 15 actgtaaacatccttgactggaagctgtaaggtgttcagaggagctttcagtcggatgtt 74
Query: 67 tacagcggcaggct 80
||||||||||||||
Sbjct: 75 tacagcggcaggct 88
>31811_mmu-mir-30e:mirbase
Length = 92
Score = 111 bits (56), Expect = 7e-26
Identities = 74/80 (92%)
Strand = Plus / Plus
Query: 1 tttgccactgtaaacatccttgactggaagctgtgaggcgttcccaggagctttcagtcg 60
||||| |||||||||||||||||||||||||||| ||| ||| |||||||||||||||
Sbjct: 9 tttgctactgtaaacatccttgactggaagctgtaaggtgttgagaggagctttcagtcg 68
Query: 61 gatgtttacagcggcaggct 80
||||||||||||||||||||
Sbjct: 69 gatgtttacagcggcaggct 88
>32693_rno-mir-30e:mirbase
Length = 92
Score = 111 bits (56), Expect = 7e-26
Identities = 74/80 (92%)
Strand = Plus / Plus
Query: 1 tttgccactgtaaacatccttgactggaagctgtgaggcgttcccaggagctttcagtcg 60
||||| |||||||||||||||||||||||||||| ||| ||| |||||||||||||||
Sbjct: 9 tttgctactgtaaacatccttgactggaagctgtaaggtgttgagaggagctttcagtcg 68
Query: 61 gatgtttacagcggcaggct 80
||||||||||||||||||||
Sbjct: 69 gatgtttacagcggcaggct 88
>25921_gga-mir-30e:mirbase
Length = 96
Score = 89.7 bits (45), Expect = 3e-19
Identities = 66/73 (90%)
Strand = Plus / Plus
Query: 8 ctgtaaacatccttgactggaagctgtgaggcgttcccaggagctttcagtcggatgttt 67
||||||||||||||||||||||||||||||| || | || ||||||||||||||||||
Sbjct: 18 ctgtaaacatccttgactggaagctgtgaggtgtcagcgggggctttcagtcggatgttt 77
Query: 68 acagcggcaggct 80
||||| |||||||
Sbjct: 78 acagctgcaggct 90
>31454_oan-mir-30e:mirbase
Length = 95
Score = 87.7 bits (44), Expect = 1e-18
Identities = 72/80 (90%), Gaps = 1/80 (1%)
Strand = Plus / Plus
Query: 1 tttgccactgtaaacatccttgactggaagctgtgaggcgttcccaggagctttcagtcg 60
||||| ||||||||||||||||||||||||||| ||| | | |||||||||||||||
Sbjct: 8 tttgctactgtaaacatccttgactggaagctggaaggtgc-cgaaggagctttcagtcg 66
Query: 61 gatgtttacagcggcaggct 80
||||||||||||||||||||
Sbjct: 67 gatgtttacagcggcaggct 86
>26658_cfa-mir-30e:mirbase
Length = 64
Score = 79.8 bits (40), Expect = 3e-16
Identities = 58/64 (90%)
Strand = Plus / Plus
Query: 9 tgtaaacatccttgactggaagctgtgaggcgttcccaggagctttcagtcggatgttta 68
|||||||||||||||||||||||||| ||| | || ||| |||||||||||||||||||
Sbjct: 1 tgtaaacatccttgactggaagctgtaaggtgctcagaggggctttcagtcggatgttta 60
Query: 69 cagc 72
||||
Sbjct: 61 cagc 64
>26421_tgu-mir-30a:mirbase
Length = 92
Score = 75.8 bits (38), Expect = 4e-15
Identities = 69/78 (88%), Gaps = 1/78 (1%)
Strand = Plus / Plus
Query: 3 tgccactgtaaacatccttgactggaagctgtgaggcgttcccaggagctttcagtcgga 62
|||| |||||||||||||||||||||||||| ||| | | |||||||||||||||||
Sbjct: 14 tgcctctgtaaacatccttgactggaagctggaagg-gctggaaggagctttcagtcgga 72
Query: 63 tgtttacagcggcaggct 80
|||||||||| |||||||
Sbjct: 73 tgtttacagcagcaggct 90
>26422_tgu-mir-30a:mirbase
Length = 92
Score = 75.8 bits (38), Expect = 4e-15
Identities = 69/78 (88%), Gaps = 1/78 (1%)
Strand = Plus / Plus
Query: 3 tgccactgtaaacatccttgactggaagctgtgaggcgttcccaggagctttcagtcgga 62
|||| |||||||||||||||||||||||||| ||| | | |||||||||||||||||
Sbjct: 14 tgcctctgtaaacatccttgactggaagctggaagg-gctggaaggagctttcagtcgga 72
Query: 63 tgtttacagcggcaggct 80
|||||||||| |||||||
Sbjct: 73 tgtttacagcagcaggct 90
>25737_xtr-mir-30e:mirbase
Length = 90
Score = 58.0 bits (29), Expect = 1e-09
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 8 ctgtaaacatccttgactggaagctgtga 36
|||||||||||||||||||||||||||||
Sbjct: 16 ctgtaaacatccttgactggaagctgtga 44
>33164_bta-mir-30a:mirbase
Length = 67
Score = 56.0 bits (28), Expect = 4e-09
Identities = 31/32 (96%)
Strand = Plus / Plus
Query: 8 ctgtaaacatccttgactggaagctgtgaggc 39
||||||||||||| ||||||||||||||||||
Sbjct: 1 ctgtaaacatcctcgactggaagctgtgaggc 32
>33938_ssc-mir-30a:mirbase
Length = 107
Score = 56.0 bits (28), Expect = 4e-09
Identities = 31/32 (96%)
Strand = Plus / Plus
Query: 8 ctgtaaacatccttgactggaagctgtgaggc 39
||||||||||||| ||||||||||||||||||
Sbjct: 20 ctgtaaacatcctcgactggaagctgtgaggc 51
>33939_ssc-mir-30a:mirbase
Length = 107
Score = 56.0 bits (28), Expect = 4e-09
Identities = 31/32 (96%)
Strand = Plus / Plus
Query: 8 ctgtaaacatccttgactggaagctgtgaggc 39
||||||||||||| ||||||||||||||||||
Sbjct: 20 ctgtaaacatcctcgactggaagctgtgaggc 51
>34251_dre-mir-30e-2:mirbase
Length = 80
Score = 54.0 bits (27), Expect = 2e-08
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 7 actgtaaacatccttgactggaagctg 33
|||||||||||||||||||||||||||
Sbjct: 9 actgtaaacatccttgactggaagctg 35
Score = 44.1 bits (22), Expect = 1e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 47 ggagctttcagtcggatgtttacagc 72
||||||||||||||||||||| ||||
Sbjct: 47 ggagctttcagtcggatgtttgcagc 72
>25731_xtr-mir-30a:mirbase
Length = 71
Score = 52.0 bits (26), Expect = 6e-08
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 7 actgtaaacatccttgactggaagctgtga 36
|||||||||||||| |||||||||||||||
Sbjct: 4 actgtaaacatcctcgactggaagctgtga 33
>25732_xtr-mir-30a:mirbase
Length = 71
Score = 52.0 bits (26), Expect = 6e-08
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 7 actgtaaacatccttgactggaagctgtga 36
|||||||||||||| |||||||||||||||
Sbjct: 4 actgtaaacatcctcgactggaagctgtga 33
>25915_gga-mir-30a:mirbase
Length = 72
Score = 52.0 bits (26), Expect = 6e-08
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 7 actgtaaacatccttgactggaagctgtga 36
|||||||||||||| |||||||||||||||
Sbjct: 4 actgtaaacatcctcgactggaagctgtga 33
>25916_gga-mir-30a:mirbase
Length = 72
Score = 52.0 bits (26), Expect = 6e-08
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 7 actgtaaacatccttgactggaagctgtga 36
|||||||||||||| |||||||||||||||
Sbjct: 4 actgtaaacatcctcgactggaagctgtga 33
>26423_tgu-mir-30b:mirbase
Length = 73
Score = 52.0 bits (26), Expect = 6e-08
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 7 actgtaaacatccttgactggaagctgtga 36
|||||||||||||| |||||||||||||||
Sbjct: 9 actgtaaacatcctcgactggaagctgtga 38
>26424_tgu-mir-30b:mirbase
Length = 73
Score = 52.0 bits (26), Expect = 6e-08
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 7 actgtaaacatccttgactggaagctgtga 36
|||||||||||||| |||||||||||||||
Sbjct: 9 actgtaaacatcctcgactggaagctgtga 38
>27680_mml-mir-30a:mirbase
Length = 71
Score = 52.0 bits (26), Expect = 6e-08
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 7 actgtaaacatccttgactggaagctgtga 36
|||||||||||||| |||||||||||||||
Sbjct: 4 actgtaaacatcctcgactggaagctgtga 33
>27681_mml-mir-30a:mirbase
Length = 71
Score = 52.0 bits (26), Expect = 6e-08
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 7 actgtaaacatccttgactggaagctgtga 36
|||||||||||||| |||||||||||||||
Sbjct: 4 actgtaaacatcctcgactggaagctgtga 33
>28278_ggo-mir-30a:mirbase
Length = 71
Score = 52.0 bits (26), Expect = 6e-08
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 7 actgtaaacatccttgactggaagctgtga 36
|||||||||||||| |||||||||||||||
Sbjct: 4 actgtaaacatcctcgactggaagctgtga 33
>28279_ggo-mir-30a:mirbase
Length = 71
Score = 52.0 bits (26), Expect = 6e-08
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 7 actgtaaacatccttgactggaagctgtga 36
|||||||||||||| |||||||||||||||
Sbjct: 4 actgtaaacatcctcgactggaagctgtga 33
>28391_hsa-mir-30a:mirbase
Length = 71
Score = 52.0 bits (26), Expect = 6e-08
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 7 actgtaaacatccttgactggaagctgtga 36
|||||||||||||| |||||||||||||||
Sbjct: 4 actgtaaacatcctcgactggaagctgtga 33
>30066_ppa-mir-30a:mirbase
Length = 71
Score = 52.0 bits (26), Expect = 6e-08
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 7 actgtaaacatccttgactggaagctgtga 36
|||||||||||||| |||||||||||||||
Sbjct: 4 actgtaaacatcctcgactggaagctgtga 33
>30065_ppa-mir-30a:mirbase
Length = 71
Score = 52.0 bits (26), Expect = 6e-08
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 7 actgtaaacatccttgactggaagctgtga 36
|||||||||||||| |||||||||||||||
Sbjct: 4 actgtaaacatcctcgactggaagctgtga 33
>30176_ptr-mir-30a:mirbase
Length = 71
Score = 52.0 bits (26), Expect = 6e-08
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 7 actgtaaacatccttgactggaagctgtga 36
|||||||||||||| |||||||||||||||
Sbjct: 4 actgtaaacatcctcgactggaagctgtga 33
>30177_ptr-mir-30a:mirbase
Length = 71
Score = 52.0 bits (26), Expect = 6e-08
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 7 actgtaaacatccttgactggaagctgtga 36
|||||||||||||| |||||||||||||||
Sbjct: 4 actgtaaacatcctcgactggaagctgtga 33
>30781_ppy-mir-30a:mirbase
Length = 71
Score = 52.0 bits (26), Expect = 6e-08
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 7 actgtaaacatccttgactggaagctgtga 36
|||||||||||||| |||||||||||||||
Sbjct: 4 actgtaaacatcctcgactggaagctgtga 33
>30782_ppy-mir-30a:mirbase
Length = 71
Score = 52.0 bits (26), Expect = 6e-08
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 7 actgtaaacatccttgactggaagctgtga 36
|||||||||||||| |||||||||||||||
Sbjct: 4 actgtaaacatcctcgactggaagctgtga 33
>31450_oan-mir-30a:mirbase
Length = 137
Score = 52.0 bits (26), Expect = 6e-08
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 7 actgtaaacatccttgactggaagctgtga 36
|||||||||||||| |||||||||||||||
Sbjct: 29 actgtaaacatcctcgactggaagctgtga 58
>31806_mmu-mir-30a:mirbase
Length = 71
Score = 52.0 bits (26), Expect = 6e-08
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 7 actgtaaacatccttgactggaagctgtga 36
|||||||||||||| |||||||||||||||
Sbjct: 4 actgtaaacatcctcgactggaagctgtga 33
>32687_rno-mir-30a:mirbase
Length = 71
Score = 52.0 bits (26), Expect = 6e-08
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 7 actgtaaacatccttgactggaagctgtga 36
|||||||||||||| |||||||||||||||
Sbjct: 4 actgtaaacatcctcgactggaagctgtga 33
>27356_mdo-mir-30a:mirbase
Length = 72
Score = 50.1 bits (25), Expect = 2e-07
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 8 ctgtaaacatccttgactggaagctgtga 36
||||||||||||| |||||||||||||||
Sbjct: 5 ctgtaaacatcctcgactggaagctgtga 33
>25736_xtr-mir-30d:mirbase
Length = 81
Score = 48.1 bits (24), Expect = 9e-07
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 8 ctgtaaacatccttgactggaagctgtgaggc 39
|||||||||||| ||||||||||||||||||
Sbjct: 10 ctgtaaacatccccgactggaagctgtgaggc 41
>26653_cfa-mir-30a:mirbase
Length = 63
Score = 48.1 bits (24), Expect = 9e-07
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 9 tgtaaacatccttgactggaagctgtga 36
|||||||||||| |||||||||||||||
Sbjct: 1 tgtaaacatcctcgactggaagctgtga 28
>25456_pma-mir-30b:mirbase
Length = 95
Score = 44.1 bits (22), Expect = 1e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 8 ctgtaaacatccttgactggaagctg 33
|||||||||||| |||||||||||||
Sbjct: 16 ctgtaaacatccctgactggaagctg 41
>25457_pma-mir-30c:mirbase
Length = 89
Score = 42.1 bits (21), Expect = 6e-05
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 7 actgtaaacatccttgactggaagctgtg 35
|||||||||||||| ||||| ||||||||
Sbjct: 11 actgtaaacatcctcgactgaaagctgtg 39
>26978_eca-mir-30d:mirbase
Length = 71
Score = 42.1 bits (21), Expect = 6e-05
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 9 tgtaaacatccttgactggaagctgtgag 37
||||||||||| ||||||||||||||||
Sbjct: 7 tgtaaacatccccgactggaagctgtgag 35
>25455_pma-mir-30a:mirbase
Length = 76
Score = 40.1 bits (20), Expect = 2e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 8 ctgtaaacatccttgactggaagc 31
||||||||||||| ||||||||||
Sbjct: 8 ctgtaaacatcctcgactggaagc 31
>34250_dre-mir-30d:mirbase
Length = 128
Score = 40.1 bits (20), Expect = 2e-04
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 8 ctgtaaacatccttgactggaagctgtg 35
|||||||||||| ||||||||||||||
Sbjct: 34 ctgtaaacatccccgactggaagctgtg 61
>25920_gga-mir-30d:mirbase
Length = 64
Score = 38.2 bits (19), Expect = 9e-04
Identities = 25/27 (92%)
Strand = Plus / Plus
Query: 8 ctgtaaacatccttgactggaagctgt 34
|||||||||||| |||||||||||||
Sbjct: 5 ctgtaaacatccccgactggaagctgt 31
>26427_tgu-mir-30d:mirbase
Length = 72
Score = 38.2 bits (19), Expect = 9e-04
Identities = 25/27 (92%)
Strand = Plus / Plus
Query: 8 ctgtaaacatccttgactggaagctgt 34
|||||||||||| |||||||||||||
Sbjct: 2 ctgtaaacatccccgactggaagctgt 28
>26428_tgu-mir-30d:mirbase
Length = 72
Score = 38.2 bits (19), Expect = 9e-04
Identities = 25/27 (92%)
Strand = Plus / Plus
Query: 8 ctgtaaacatccttgactggaagctgt 34
|||||||||||| |||||||||||||
Sbjct: 2 ctgtaaacatccccgactggaagctgt 28
>31453_oan-mir-30d:mirbase
Length = 132
Score = 38.2 bits (19), Expect = 9e-04
Identities = 25/27 (92%)
Strand = Plus / Plus
Query: 8 ctgtaaacatccttgactggaagctgt 34
|||||||||||| |||||||||||||
Sbjct: 28 ctgtaaacatccccgactggaagctgt 54
>31810_mmu-mir-30d:mirbase
Length = 82
Score = 38.2 bits (19), Expect = 9e-04
Identities = 25/27 (92%)
Strand = Plus / Plus
Query: 8 ctgtaaacatccttgactggaagctgt 34
|||||||||||| |||||||||||||
Sbjct: 11 ctgtaaacatccccgactggaagctgt 37
>32692_rno-mir-30d:mirbase
Length = 82
Score = 38.2 bits (19), Expect = 9e-04
Identities = 25/27 (92%)
Strand = Plus / Plus
Query: 8 ctgtaaacatccttgactggaagctgt 34
|||||||||||| |||||||||||||
Sbjct: 11 ctgtaaacatccccgactggaagctgt 37
>34575_fru-mir-30d:mirbase
Length = 98
Score = 38.2 bits (19), Expect = 9e-04
Identities = 25/27 (92%)
Strand = Plus / Plus
Query: 8 ctgtaaacatccttgactggaagctgt 34
|||||||||||| |||||||||||||
Sbjct: 20 ctgtaaacatccccgactggaagctgt 46
>34722_tni-mir-30d:mirbase
Length = 86
Score = 38.2 bits (19), Expect = 9e-04
Identities = 25/27 (92%)
Strand = Plus / Plus
Query: 8 ctgtaaacatccttgactggaagctgt 34
|||||||||||| |||||||||||||
Sbjct: 14 ctgtaaacatccccgactggaagctgt 40
