miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>27360_mdo-mir-34a:mirbase
Length = 111
Score = 101 bits (51), Expect = 7e-23
Identities = 70/75 (93%), Gaps = 1/75 (1%)
Strand = Plus / Plus
Query: 1 tttctttggcagtgtcttagctggttgttgtgagtaatagcaaaggaagcaatcagc-ag 59
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||
Sbjct: 16 tttctttggcagtgtcttagctggttgttgtgagtaatagataaggaagcaatcagcaag 75
Query: 60 catcctgccctagaa 74
|| |||||||||||
Sbjct: 76 tatactgccctagaa 90
>31815_mmu-mir-34a:mirbase
Length = 102
Score = 99.6 bits (50), Expect = 3e-22
Identities = 69/74 (93%), Gaps = 1/74 (1%)
Strand = Plus / Plus
Query: 2 ttctttggcagtgtcttagctggttgttgtgagtaatagcaaaggaagcaatcagc-agc 60
||||||||||||||||||||||||||||||||||| |||| ||||||||||||||| ||
Sbjct: 15 ttctttggcagtgtcttagctggttgttgtgagtattagctaaggaagcaatcagcaagt 74
Query: 61 atcctgccctagaa 74
|| |||||||||||
Sbjct: 75 atactgccctagaa 88
>32697_rno-mir-34a:mirbase
Length = 102
Score = 99.6 bits (50), Expect = 3e-22
Identities = 69/74 (93%), Gaps = 1/74 (1%)
Strand = Plus / Plus
Query: 2 ttctttggcagtgtcttagctggttgttgtgagtaatagcaaaggaagcaatcagc-agc 60
||||||||||||||||||||||||||||||||||| |||| ||||||||||||||| ||
Sbjct: 15 ttctttggcagtgtcttagctggttgttgtgagtattagctaaggaagcaatcagcaagt 74
Query: 61 atcctgccctagaa 74
|| |||||||||||
Sbjct: 75 atactgccctagaa 88
>25925_gga-mir-34a:mirbase
Length = 109
Score = 93.7 bits (47), Expect = 2e-20
Identities = 69/75 (92%), Gaps = 1/75 (1%)
Strand = Plus / Plus
Query: 1 tttctttggcagtgtcttagctggttgttgtgagtaatagcaaaggaagcaatcagc-ag 59
|||||||||||||||||||||||||||||||||| ||||| ||||||||||||||| ||
Sbjct: 15 tttctttggcagtgtcttagctggttgttgtgagcaatagttaaggaagcaatcagcaag 74
Query: 60 catcctgccctagaa 74
|| |||||||||||
Sbjct: 75 tatactgccctagaa 89
>27557_lla-mir-34a:mirbase
Length = 111
Score = 93.7 bits (47), Expect = 2e-20
Identities = 69/75 (92%), Gaps = 1/75 (1%)
Strand = Plus / Plus
Query: 1 tttctttggcagtgtcttagctggttgttgtgagtaatagcaaaggaagcaatcagc-ag 59
|||||||||||||||||||||||||||||||||| ||||| ||||||||||||||| ||
Sbjct: 16 tttctttggcagtgtcttagctggttgttgtgagcaatagtgaaggaagcaatcagcaag 75
Query: 60 catcctgccctagaa 74
|| |||||||||||
Sbjct: 76 tatactgccctagaa 90
>27604_sla-mir-34a:mirbase
Length = 111
Score = 93.7 bits (47), Expect = 2e-20
Identities = 69/75 (92%), Gaps = 1/75 (1%)
Strand = Plus / Plus
Query: 1 tttctttggcagtgtcttagctggttgttgtgagtaatagcaaaggaagcaatcagc-ag 59
|||||||||||||||||||||||||||||||||| ||||| ||||||||||||||| ||
Sbjct: 16 tttctttggcagtgtcttagctggttgttgtgagcaatagtgaaggaagcaatcagcaag 75
Query: 60 catcctgccctagaa 74
|| |||||||||||
Sbjct: 76 tatactgccctagaa 90
>26432_tgu-mir-34a:mirbase
Length = 72
Score = 91.7 bits (46), Expect = 6e-20
Identities = 55/58 (94%)
Strand = Plus / Plus
Query: 1 tttctttggcagtgtcttagctggttgttgtgagtaatagcaaaggaagcaatcagca 58
|||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||
Sbjct: 5 tttctttggcagtgtcttagctggttgttgtgagcaatagtcaaggaagcaatcagca 62
>26663_cfa-mir-34a:mirbase
Length = 66
Score = 87.7 bits (44), Expect = 1e-18
Identities = 50/52 (96%)
Strand = Plus / Plus
Query: 7 tggcagtgtcttagctggttgttgtgagtaatagcaaaggaagcaatcagca 58
|||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 1 tggcagtgtcttagctggttgttgtgagtaatagtgaaggaagcaatcagca 52
>27496_age-mir-34a:mirbase
Length = 111
Score = 85.7 bits (43), Expect = 4e-18
Identities = 68/75 (90%), Gaps = 1/75 (1%)
Strand = Plus / Plus
Query: 1 tttctttggcagtgtcttagctggttgttgtgagtaatagcaaaggaagcaatcagc-ag 59
|||||||||||||||||||||||||||||||| | ||||| ||||||||||||||| ||
Sbjct: 16 tttctttggcagtgtcttagctggttgttgtgtgcaatagtgaaggaagcaatcagcaag 75
Query: 60 catcctgccctagaa 74
|| |||||||||||
Sbjct: 76 tatactgccctagaa 90
>27691_mml-mir-34a:mirbase
Length = 110
Score = 85.7 bits (43), Expect = 4e-18
Identities = 69/75 (92%), Gaps = 2/75 (2%)
Strand = Plus / Plus
Query: 1 tttctttggcagtgtcttagctggttgttgtgagtaatagcaaaggaagcaatcagc-ag 59
|||||||||||||||||||||||||||||||||| ||||| ||||||||||||||| ||
Sbjct: 16 tttctttggcagtgtcttagctggttgttgtgagcaatag-taaggaagcaatcagcaag 74
Query: 60 catcctgccctagaa 74
|| |||||||||||
Sbjct: 75 tatactgccctagaa 89
>28197_mne-mir-34a:mirbase
Length = 110
Score = 85.7 bits (43), Expect = 4e-18
Identities = 69/75 (92%), Gaps = 2/75 (2%)
Strand = Plus / Plus
Query: 1 tttctttggcagtgtcttagctggttgttgtgagtaatagcaaaggaagcaatcagc-ag 59
|||||||||||||||||||||||||||||||||| ||||| ||||||||||||||| ||
Sbjct: 16 tttctttggcagtgtcttagctggttgttgtgagcaatag-taaggaagcaatcagcaag 74
Query: 60 catcctgccctagaa 74
|| |||||||||||
Sbjct: 75 tatactgccctagaa 89
>28285_ggo-mir-34a:mirbase
Length = 110
Score = 85.7 bits (43), Expect = 4e-18
Identities = 69/75 (92%), Gaps = 2/75 (2%)
Strand = Plus / Plus
Query: 1 tttctttggcagtgtcttagctggttgttgtgagtaatagcaaaggaagcaatcagc-ag 59
|||||||||||||||||||||||||||||||||| ||||| ||||||||||||||| ||
Sbjct: 16 tttctttggcagtgtcttagctggttgttgtgagcaatag-taaggaagcaatcagcaag 74
Query: 60 catcctgccctagaa 74
|| |||||||||||
Sbjct: 75 tatactgccctagaa 89
>28401_hsa-mir-34a:mirbase
Length = 110
Score = 85.7 bits (43), Expect = 4e-18
Identities = 69/75 (92%), Gaps = 2/75 (2%)
Strand = Plus / Plus
Query: 1 tttctttggcagtgtcttagctggttgttgtgagtaatagcaaaggaagcaatcagc-ag 59
|||||||||||||||||||||||||||||||||| ||||| ||||||||||||||| ||
Sbjct: 16 tttctttggcagtgtcttagctggttgttgtgagcaatag-taaggaagcaatcagcaag 74
Query: 60 catcctgccctagaa 74
|| |||||||||||
Sbjct: 75 tatactgccctagaa 89
>30072_ppa-mir-34a:mirbase
Length = 110
Score = 85.7 bits (43), Expect = 4e-18
Identities = 69/75 (92%), Gaps = 2/75 (2%)
Strand = Plus / Plus
Query: 1 tttctttggcagtgtcttagctggttgttgtgagtaatagcaaaggaagcaatcagc-ag 59
|||||||||||||||||||||||||||||||||| ||||| ||||||||||||||| ||
Sbjct: 16 tttctttggcagtgtcttagctggttgttgtgagcaatag-taaggaagcaatcagcaag 74
Query: 60 catcctgccctagaa 74
|| |||||||||||
Sbjct: 75 tatactgccctagaa 89
>30187_ptr-mir-34a:mirbase
Length = 110
Score = 85.7 bits (43), Expect = 4e-18
Identities = 69/75 (92%), Gaps = 2/75 (2%)
Strand = Plus / Plus
Query: 1 tttctttggcagtgtcttagctggttgttgtgagtaatagcaaaggaagcaatcagc-ag 59
|||||||||||||||||||||||||||||||||| ||||| ||||||||||||||| ||
Sbjct: 16 tttctttggcagtgtcttagctggttgttgtgagcaatag-taaggaagcaatcagcaag 74
Query: 60 catcctgccctagaa 74
|| |||||||||||
Sbjct: 75 tatactgccctagaa 89
>30791_ppy-mir-34a:mirbase
Length = 110
Score = 85.7 bits (43), Expect = 4e-18
Identities = 69/75 (92%), Gaps = 2/75 (2%)
Strand = Plus / Plus
Query: 1 tttctttggcagtgtcttagctggttgttgtgagtaatagcaaaggaagcaatcagc-ag 59
|||||||||||||||||||||||||||||||||| ||||| ||||||||||||||| ||
Sbjct: 16 tttctttggcagtgtcttagctggttgttgtgagcaatag-taaggaagcaatcagcaag 74
Query: 60 catcctgccctagaa 74
|| |||||||||||
Sbjct: 75 tatactgccctagaa 89
>33175_bta-mir-34a:mirbase
Length = 107
Score = 85.7 bits (43), Expect = 4e-18
Identities = 68/75 (90%), Gaps = 1/75 (1%)
Strand = Plus / Plus
Query: 1 tttctttggcagtgtcttagctggttgttgtgagtaatagcaaaggaagcaatcagc-ag 59
||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||
Sbjct: 16 tttctttggcagtgtcttagctggttgttgtgagtaataatgcaggaagcaatcagcaag 75
Query: 60 catcctgccctagaa 74
|| |||||||||||
Sbjct: 76 tatactgccctagaa 90
>26984_eca-mir-34:mirbase
Length = 63
Score = 71.9 bits (36), Expect = 6e-14
Identities = 48/52 (92%)
Strand = Plus / Plus
Query: 7 tggcagtgtcttagctggttgttgtgagtaatagcaaaggaagcaatcagca 58
|||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 1 tggcagtgtcttagctggttgttgtgagtaatagtgcgggaagcaatcagca 52
>25742_xtr-mir-34a:mirbase
Length = 96
Score = 63.9 bits (32), Expect = 1e-11
Identities = 32/32 (100%)
Strand = Plus / Plus
Query: 1 tttctttggcagtgtcttagctggttgttgtg 32
||||||||||||||||||||||||||||||||
Sbjct: 10 tttctttggcagtgtcttagctggttgttgtg 41
>34253_dre-mir-34:mirbase
Length = 98
Score = 54.0 bits (27), Expect = 1e-08
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 2 ttctttggcagtgtcttagctggttgttgtg 32
|||| ||||||||||||||||||||||||||
Sbjct: 14 ttctctggcagtgtcttagctggttgttgtg 44
