miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>33952_ssc-mir-92b:mirbase
Length = 80
Score = 159 bits (80), Expect = 4e-40
Identities = 80/80 (100%)
Strand = Plus / Plus
Query: 1 gcgggcgggagggacgggacgcggtgcagtgttgttctttcccctgccaatattgcactc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 gcgggcgggagggacgggacgcggtgcagtgttgttctttcccctgccaatattgcactc 60
Query: 61 gtcccggcctccggcccccc 80
||||||||||||||||||||
Sbjct: 61 gtcccggcctccggcccccc 80
>33180_bta-mir-92b:mirbase
Length = 96
Score = 157 bits (79), Expect = 1e-39
Identities = 79/79 (100%)
Strand = Plus / Plus
Query: 1 gcgggcgggagggacgggacgcggtgcagtgttgttctttcccctgccaatattgcactc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11 gcgggcgggagggacgggacgcggtgcagtgttgttctttcccctgccaatattgcactc 70
Query: 61 gtcccggcctccggccccc 79
|||||||||||||||||||
Sbjct: 71 gtcccggcctccggccccc 89
>27697_mml-mir-92b:mirbase
Length = 96
Score = 151 bits (76), Expect = 9e-38
Identities = 79/80 (98%)
Strand = Plus / Plus
Query: 1 gcgggcgggagggacgggacgcggtgcagtgttgttctttcccctgccaatattgcactc 60
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 11 gcgggcgggagggacgggacgcggtgcagtgttgttctttcccccgccaatattgcactc 70
Query: 61 gtcccggcctccggcccccc 80
||||||||||||||||||||
Sbjct: 71 gtcccggcctccggcccccc 90
>31821_mmu-mir-92b:mirbase
Length = 83
Score = 145 bits (73), Expect = 5e-36
Identities = 76/77 (98%)
Strand = Plus / Plus
Query: 3 gggcgggagggacgggacgcggtgcagtgttgttctttcccctgccaatattgcactcgt 62
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 4 gggcgggagggacgggacgtggtgcagtgttgttctttcccctgccaatattgcactcgt 63
Query: 63 cccggcctccggccccc 79
|||||||||||||||||
Sbjct: 64 cccggcctccggccccc 80
>32702_rno-mir-92b:mirbase
Length = 83
Score = 145 bits (73), Expect = 5e-36
Identities = 76/77 (98%)
Strand = Plus / Plus
Query: 3 gggcgggagggacgggacgcggtgcagtgttgttctttcccctgccaatattgcactcgt 62
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4 gggcaggagggacgggacgcggtgcagtgttgttctttcccctgccaatattgcactcgt 63
Query: 63 cccggcctccggccccc 79
|||||||||||||||||
Sbjct: 64 cccggcctccggccccc 80
>28407_hsa-mir-92b:mirbase
Length = 96
Score = 143 bits (72), Expect = 2e-35
Identities = 78/80 (97%)
Strand = Plus / Plus
Query: 1 gcgggcgggagggacgggacgcggtgcagtgttgttctttcccctgccaatattgcactc 60
|||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||
Sbjct: 11 gcgggcgggagggacgggacgcggtgcagtgttgttttttcccccgccaatattgcactc 70
Query: 61 gtcccggcctccggcccccc 80
||||||||||||||||||||
Sbjct: 71 gtcccggcctccggcccccc 90
>26990_eca-mir-92b:mirbase
Length = 75
Score = 141 bits (71), Expect = 8e-35
Identities = 74/75 (98%)
Strand = Plus / Plus
Query: 3 gggcgggagggacgggacgcggtgcagtgttgttctttcccctgccaatattgcactcgt 62
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 1 gggcgggagggacgggacgcggtgcagtgttgttctttcccccgccaatattgcactcgt 60
Query: 63 cccggcctccggccc 77
|||||||||||||||
Sbjct: 61 cccggcctccggccc 75
>30797_ppy-mir-92b:mirbase
Length = 96
Score = 139 bits (70), Expect = 3e-34
Identities = 76/78 (97%)
Strand = Plus / Plus
Query: 1 gcgggcgggagggacgggacgcggtgcagtgttgttctttcccctgccaatattgcactc 60
|||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||
Sbjct: 11 gcgggcgggagggacgggacgcggtgcagtgttgttttttcccccgccaatattgcactc 70
Query: 61 gtcccggcctccggcccc 78
||||||||||||||||||
Sbjct: 71 gtcccggcctccggcccc 88
>26668_cfa-mir-92b:mirbase
Length = 63
Score = 109 bits (55), Expect = 3e-25
Identities = 61/63 (96%)
Strand = Plus / Plus
Query: 10 agggacgggacgcggtgcagtgttgttctttcccctgccaatattgcactcgtcccggcc 69
||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||
Sbjct: 1 agggacgggacgcggtgcagtgttgttctctcccccgccaatattgcactcgtcccggcc 60
Query: 70 tcc 72
|||
Sbjct: 61 tcc 63
>25749_xtr-mir-92b:mirbase
Length = 73
Score = 73.8 bits (37), Expect = 2e-14
Identities = 46/49 (93%)
Strand = Plus / Plus
Query: 24 gtgcagtgttgttctttcccctgccaatattgcactcgtcccggcctcc 72
||||| |||||| ||||| ||||||||||||||||||||||||||||||
Sbjct: 21 gtgcactgttgtcctttctcctgccaatattgcactcgtcccggcctcc 69
>34258_dre-mir-92b:mirbase
Length = 82
Score = 65.9 bits (33), Expect = 4e-12
Identities = 45/49 (91%)
Strand = Plus / Plus
Query: 24 gtgcagtgttgttctttcccctgccaatattgcactcgtcccggcctcc 72
|||||||||||||| || || |||||||||||||||||||||||||||
Sbjct: 29 gtgcagtgttgttcaatctcccgccaatattgcactcgtcccggcctcc 77
>34875_sko-mir-92c:mirbase
Length = 101
Score = 44.1 bits (22), Expect = 1e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 49 aatattgcactcgtcccggcct 70
||||||||||||||||||||||
Sbjct: 59 aatattgcactcgtcccggcct 80
>34949_xbo-mir-92a:mirbase
Length = 82
Score = 44.1 bits (22), Expect = 1e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 49 aatattgcactcgtcccggcct 70
||||||||||||||||||||||
Sbjct: 48 aatattgcactcgtcccggcct 69
>34820_spu-mir-92c:mirbase
Length = 101
Score = 42.1 bits (21), Expect = 6e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 50 atattgcactcgtcccggcct 70
|||||||||||||||||||||
Sbjct: 60 atattgcactcgtcccggcct 80
>38110_bma-mir-92:mirbase
Length = 105
Score = 42.1 bits (21), Expect = 6e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 50 atattgcactcgtcccggcct 70
|||||||||||||||||||||
Sbjct: 66 atattgcactcgtcccggcct 86
>25350_odi-mir-92a:mirbase
Length = 101
Score = 40.1 bits (20), Expect = 2e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 51 tattgcactcgtcccggcct 70
||||||||||||||||||||
Sbjct: 66 tattgcactcgtcccggcct 85
>25466_pma-mir-92a:mirbase
Length = 80
Score = 40.1 bits (20), Expect = 2e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 51 tattgcactcgtcccggcct 70
||||||||||||||||||||
Sbjct: 49 tattgcactcgtcccggcct 68
>24669_bfl-mir-92b:mirbase
Length = 101
Score = 38.2 bits (19), Expect = 9e-04
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 52 attgcactcgtcccggcct 70
|||||||||||||||||||
Sbjct: 62 attgcactcgtcccggcct 80
>34818_spu-mir-92a:mirbase
Length = 101
Score = 38.2 bits (19), Expect = 9e-04
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 48 caatattgcactcgtcccggcct 70
|||||||||||| ||||||||||
Sbjct: 58 caatattgcacttgtcccggcct 80
>35008_dpu-mir-92:mirbase
Length = 101
Score = 38.2 bits (19), Expect = 9e-04
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 52 attgcactcgtcccggcct 70
|||||||||||||||||||
Sbjct: 62 attgcactcgtcccggcct 80
>35363_ame-mir-92a:mirbase
Length = 100
Score = 38.2 bits (19), Expect = 9e-04
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 48 caatattgcactcgtcccggcct 70
|||||||||||| ||||||||||
Sbjct: 60 caatattgcacttgtcccggcct 82
>37577_ngi-mir-92a:mirbase
Length = 94
Score = 38.2 bits (19), Expect = 9e-04
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 48 caatattgcactcgtcccggcct 70
|||||||||||| ||||||||||
Sbjct: 54 caatattgcacttgtcccggcct 76
>37609_nlo-mir-92a:mirbase
Length = 93
Score = 38.2 bits (19), Expect = 9e-04
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 48 caatattgcactcgtcccggcct 70
|||||||||||| ||||||||||
Sbjct: 54 caatattgcacttgtcccggcct 76
>37647_nvi-mir-92a:mirbase
Length = 98
Score = 38.2 bits (19), Expect = 9e-04
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 48 caatattgcactcgtcccggcct 70
|||||||||||| ||||||||||
Sbjct: 59 caatattgcacttgtcccggcct 81
