miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>33197_bta-mir-122:mirbase
Length = 85
Score = 168 bits (85), Expect = 4e-43
Identities = 85/85 (100%)
Strand = Plus / Plus
Query: 1 ccttagcagagctgtggagtgtgacaatggtgtttgtgtccaaactatcaaacgccatta 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 ccttagcagagctgtggagtgtgacaatggtgtttgtgtccaaactatcaaacgccatta 60
Query: 61 tcacactaaatagctactgttaggc 85
|||||||||||||||||||||||||
Sbjct: 61 tcacactaaatagctactgttaggc 85
>28426_hsa-mir-122:mirbase
Length = 85
Score = 153 bits (77), Expect = 2e-38
Identities = 83/85 (97%)
Strand = Plus / Plus
Query: 1 ccttagcagagctgtggagtgtgacaatggtgtttgtgtccaaactatcaaacgccatta 60
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 1 ccttagcagagctgtggagtgtgacaatggtgtttgtgtctaaactatcaaacgccatta 60
Query: 61 tcacactaaatagctactgttaggc 85
||||||||||||||||||| |||||
Sbjct: 61 tcacactaaatagctactgctaggc 85
>30814_ppy-mir-122:mirbase
Length = 85
Score = 153 bits (77), Expect = 2e-38
Identities = 83/85 (97%)
Strand = Plus / Plus
Query: 1 ccttagcagagctgtggagtgtgacaatggtgtttgtgtccaaactatcaaacgccatta 60
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 1 ccttagcagagctgtggagtgtgacaatggtgtttgtgtctaaactatcaaacgccatta 60
Query: 61 tcacactaaatagctactgttaggc 85
||||||||||||||||||| |||||
Sbjct: 61 tcacactaaatagctactgctaggc 85
>27714_mml-mir-122a:mirbase
Length = 85
Score = 147 bits (74), Expect = 1e-36
Identities = 77/78 (98%)
Strand = Plus / Plus
Query: 1 ccttagcagagctgtggagtgtgacaatggtgtttgtgtccaaactatcaaacgccatta 60
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 1 ccttagcagagctgtggagtgtgacaatggtgtttgtgtctaaactatcaaacgccatta 60
Query: 61 tcacactaaatagctact 78
||||||||||||||||||
Sbjct: 61 tcacactaaatagctact 78
>30207_ptr-mir-122:mirbase
Length = 84
Score = 143 bits (72), Expect = 2e-35
Identities = 81/84 (96%)
Strand = Plus / Plus
Query: 2 cttagcagagctgtggagtgtgacaatggtgtttgtgtccaaactatcaaacgccattat 61
||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||
Sbjct: 1 cttagcagagctgtggagtgtgacaatggtgtttgtgtctaaattatcaaacgccattat 60
Query: 62 cacactaaatagctactgttaggc 85
|||||||||||||||||| |||||
Sbjct: 61 cacactaaatagctactgctaggc 84
>25937_gga-mir-122-1:mirbase
Length = 77
Score = 137 bits (69), Expect = 1e-33
Identities = 72/73 (98%)
Strand = Plus / Plus
Query: 7 cagagctgtggagtgtgacaatggtgtttgtgtccaaactatcaaacgccattatcacac 66
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 1 cagagctgtggagtgtgacaatggtgtttgtgtccaatctatcaaacgccattatcacac 60
Query: 67 taaatagctactg 79
|||||||||||||
Sbjct: 61 taaatagctactg 73
>29379_hsa-mir-3591:mirbase
Length = 73
Score = 137 bits (69), Expect = 1e-33
Identities = 72/73 (98%)
Strand = Plus / Minus
Query: 7 cagagctgtggagtgtgacaatggtgtttgtgtccaaactatcaaacgccattatcacac 66
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 73 cagagctgtggagtgtgacaatggtgtttgtgtctaaactatcaaacgccattatcacac 14
Query: 67 taaatagctactg 79
|||||||||||||
Sbjct: 13 taaatagctactg 1
>29380_hsa-mir-3591:mirbase
Length = 73
Score = 137 bits (69), Expect = 1e-33
Identities = 72/73 (98%)
Strand = Plus / Minus
Query: 7 cagagctgtggagtgtgacaatggtgtttgtgtccaaactatcaaacgccattatcacac 66
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 73 cagagctgtggagtgtgacaatggtgtttgtgtctaaactatcaaacgccattatcacac 14
Query: 67 taaatagctactg 79
|||||||||||||
Sbjct: 13 taaatagctactg 1
>27006_eca-mir-122:mirbase
Length = 66
Score = 131 bits (66), Expect = 9e-32
Identities = 66/66 (100%)
Strand = Plus / Plus
Query: 10 agctgtggagtgtgacaatggtgtttgtgtccaaactatcaaacgccattatcacactaa 69
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 agctgtggagtgtgacaatggtgtttgtgtccaaactatcaaacgccattatcacactaa 60
Query: 70 atagct 75
||||||
Sbjct: 61 atagct 66
>31478_oan-mir-122:mirbase
Length = 111
Score = 131 bits (66), Expect = 9e-32
Identities = 72/74 (97%)
Strand = Plus / Plus
Query: 7 cagagctgtggagtgtgacaatggtgtttgtgtccaaactatcaaacgccattatcacac 66
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 21 cagagctgtggagtgtgacaatggtgtttgtgtccagtctatcaaacgccattatcacac 80
Query: 67 taaatagctactgt 80
||||||||||||||
Sbjct: 81 taaatagctactgt 94
>25938_gga-mir-122-2:mirbase
Length = 77
Score = 129 bits (65), Expect = 3e-31
Identities = 71/73 (97%)
Strand = Plus / Plus
Query: 7 cagagctgtggagtgtgacaatggtgtttgtgtccaaactatcaaacgccattatcacac 66
||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 1 cagagctatggagtgtgacaatggtgtttgtgtccaatctatcaaacgccattatcacac 60
Query: 67 taaatagctactg 79
|||||||||||||
Sbjct: 61 taaatagctactg 73
>27371_mdo-mir-122:mirbase
Length = 74
Score = 123 bits (62), Expect = 2e-29
Identities = 71/74 (95%)
Strand = Plus / Plus
Query: 7 cagagctgtggagtgtgacaatggtgtttgtgtccaaactatcaaacgccattatcacac 66
||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 1 cagagctatggagtgtgacaatggtgtttgtgtccagtctatcaaacgccattatcacac 60
Query: 67 taaatagctactgt 80
||||||||||||||
Sbjct: 61 taaatagctactgt 74
>31837_mmu-mir-122:mirbase
Length = 66
Score = 123 bits (62), Expect = 2e-29
Identities = 65/66 (98%)
Strand = Plus / Plus
Query: 10 agctgtggagtgtgacaatggtgtttgtgtccaaactatcaaacgccattatcacactaa 69
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 1 agctgtggagtgtgacaatggtgtttgtgtccaaaccatcaaacgccattatcacactaa 60
Query: 70 atagct 75
||||||
Sbjct: 61 atagct 66
>32716_rno-mir-122:mirbase
Length = 85
Score = 121 bits (61), Expect = 8e-29
Identities = 79/85 (92%)
Strand = Plus / Plus
Query: 1 ccttagcagagctgtggagtgtgacaatggtgtttgtgtccaaactatcaaacgccatta 60
||||||||||||| |||||||||||||||||||||||||||||| |||||||||||| |
Sbjct: 1 ccttagcagagctctggagtgtgacaatggtgtttgtgtccaaaacatcaaacgccatca 60
Query: 61 tcacactaaatagctactgttaggc 85
|||||||||| |||||||| |||||
Sbjct: 61 tcacactaaacagctactgctaggc 85
>33091_rno-mir-3591:mirbase
Length = 109
Score = 121 bits (61), Expect = 8e-29
Identities = 79/85 (92%)
Strand = Plus / Minus
Query: 1 ccttagcagagctgtggagtgtgacaatggtgtttgtgtccaaactatcaaacgccatta 60
||||||||||||| |||||||||||||||||||||||||||||| |||||||||||| |
Sbjct: 96 ccttagcagagctctggagtgtgacaatggtgtttgtgtccaaaacatcaaacgccatca 37
Query: 61 tcacactaaatagctactgttaggc 85
|||||||||| |||||||| |||||
Sbjct: 36 tcacactaaacagctactgctaggc 12
>26685_cfa-mir-122:mirbase
Length = 58
Score = 115 bits (58), Expect = 5e-27
Identities = 58/58 (100%)
Strand = Plus / Plus
Query: 15 tggagtgtgacaatggtgtttgtgtccaaactatcaaacgccattatcacactaaata 72
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 tggagtgtgacaatggtgtttgtgtccaaactatcaaacgccattatcacactaaata 58
>26449_tgu-mir-122:mirbase
Length = 72
Score = 109 bits (55), Expect = 3e-25
Identities = 65/67 (97%), Gaps = 1/67 (1%)
Strand = Plus / Plus
Query: 7 cagagctgtggagtgtgacaatggtgtttgtgtccaaactatcaaacgccattatcacac 66
||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||
Sbjct: 3 cagagctgtggagtgtgacaatggtgtttgtgtcc-atctatcaaacgccattatcacac 61
Query: 67 taaatag 73
|||||||
Sbjct: 62 taaatag 68
>34731_tni-mir-122:mirbase
Length = 66
Score = 99.6 bits (50), Expect = 3e-22
Identities = 62/66 (93%)
Strand = Plus / Plus
Query: 10 agctgtggagtgtgacaatggtgtttgtgtccaaactatcaaacgccattatcacactaa 69
|||||||||||||||||||||||||||||||| || ||||||||||||||||||||||
Sbjct: 1 agctgtggagtgtgacaatggtgtttgtgtcctttctttcaaacgccattatcacactaa 60
Query: 70 atagct 75
||||||
Sbjct: 61 atagct 66
>25762_xtr-mir-122:mirbase
Length = 69
Score = 89.7 bits (45), Expect = 3e-19
Identities = 57/61 (93%)
Strand = Plus / Plus
Query: 9 gagctgtggagtgtgacaatggtgtttgtgtccaaactatcaaacgccattatcacacta 68
||||| |||||||||||||||||||||||||| | ||||||||||||||||||||||||
Sbjct: 1 gagctatggagtgtgacaatggtgtttgtgtcagagctatcaaacgccattatcacacta 60
Query: 69 a 69
|
Sbjct: 61 a 61
>34584_fru-mir-122:mirbase
Length = 66
Score = 83.8 bits (42), Expect = 2e-17
Identities = 60/66 (90%)
Strand = Plus / Plus
Query: 10 agctgtggagtgtgacaatggtgtttgtgtccaaactatcaaacgccattatcacactaa 69
|||| ||||||||||||||||||||||| ||| || ||||||||||||||||||||||
Sbjct: 1 agctatggagtgtgacaatggtgtttgtttcctttctttcaaacgccattatcacactaa 60
Query: 70 atagct 75
||||||
Sbjct: 61 atagct 66
>34270_dre-mir-122:mirbase
Length = 76
Score = 67.9 bits (34), Expect = 1e-12
Identities = 63/71 (88%), Gaps = 5/71 (7%)
Strand = Plus / Plus
Query: 7 cagagctgtggagtgtgacaatggtgtttgtgtccaaact---atcaaacgccattatca 63
||||||||||||||||||||||||||||||| || | || ||||||||||||||||
Sbjct: 3 cagagctgtggagtgtgacaatggtgtttgtatc--atctgtcgtcaaacgccattatca 60
Query: 64 cactaaatagc 74
|||||||||||
Sbjct: 61 cactaaatagc 71
