miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>33201_bta-mir-125a:mirbase
Length = 86
Score = 143 bits (72), Expect = 2e-35
Identities = 78/80 (97%)
Strand = Plus / Plus
Query: 1 ggcctctgagtccctgagaccctttaacctgtgaggacatccagggtcacaggtgaggtt 60
|||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 5 ggcctctgcgtccctgagaccctttaacctgtgaggacgtccagggtcacaggtgaggtt 64
Query: 61 cttgggagcctggcgtccgg 80
||||||||||||||||||||
Sbjct: 65 cttgggagcctggcgtccgg 84
>27717_mml-mir-125a:mirbase
Length = 86
Score = 139 bits (70), Expect = 3e-34
Identities = 73/74 (98%)
Strand = Plus / Plus
Query: 4 ctctgagtccctgagaccctttaacctgtgaggacatccagggtcacaggtgaggttctt 63
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8 ctctgggtccctgagaccctttaacctgtgaggacatccagggtcacaggtgaggttctt 67
Query: 64 gggagcctggcgtc 77
||||||||||||||
Sbjct: 68 gggagcctggcgtc 81
>27718_mml-mir-125a:mirbase
Length = 86
Score = 139 bits (70), Expect = 3e-34
Identities = 73/74 (98%)
Strand = Plus / Plus
Query: 4 ctctgagtccctgagaccctttaacctgtgaggacatccagggtcacaggtgaggttctt 63
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8 ctctgggtccctgagaccctttaacctgtgaggacatccagggtcacaggtgaggttctt 67
Query: 64 gggagcctggcgtc 77
||||||||||||||
Sbjct: 68 gggagcctggcgtc 81
>28430_hsa-mir-125a:mirbase
Length = 86
Score = 135 bits (68), Expect = 5e-33
Identities = 68/68 (100%)
Strand = Plus / Plus
Query: 10 gtccctgagaccctttaacctgtgaggacatccagggtcacaggtgaggttcttgggagc 69
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14 gtccctgagaccctttaacctgtgaggacatccagggtcacaggtgaggttcttgggagc 73
Query: 70 ctggcgtc 77
||||||||
Sbjct: 74 ctggcgtc 81
>28431_hsa-mir-125a:mirbase
Length = 86
Score = 135 bits (68), Expect = 5e-33
Identities = 68/68 (100%)
Strand = Plus / Plus
Query: 10 gtccctgagaccctttaacctgtgaggacatccagggtcacaggtgaggttcttgggagc 69
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14 gtccctgagaccctttaacctgtgaggacatccagggtcacaggtgaggttcttgggagc 73
Query: 70 ctggcgtc 77
||||||||
Sbjct: 74 ctggcgtc 81
>30817_ppy-mir-125a:mirbase
Length = 86
Score = 135 bits (68), Expect = 5e-33
Identities = 68/68 (100%)
Strand = Plus / Plus
Query: 10 gtccctgagaccctttaacctgtgaggacatccagggtcacaggtgaggttcttgggagc 69
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14 gtccctgagaccctttaacctgtgaggacatccagggtcacaggtgaggttcttgggagc 73
Query: 70 ctggcgtc 77
||||||||
Sbjct: 74 ctggcgtc 81
>30818_ppy-mir-125a:mirbase
Length = 86
Score = 135 bits (68), Expect = 5e-33
Identities = 68/68 (100%)
Strand = Plus / Plus
Query: 10 gtccctgagaccctttaacctgtgaggacatccagggtcacaggtgaggttcttgggagc 69
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14 gtccctgagaccctttaacctgtgaggacatccagggtcacaggtgaggttcttgggagc 73
Query: 70 ctggcgtc 77
||||||||
Sbjct: 74 ctggcgtc 81
>32720_rno-mir-125a:mirbase
Length = 85
Score = 133 bits (67), Expect = 2e-32
Identities = 73/75 (97%)
Strand = Plus / Plus
Query: 1 ggcctctgagtccctgagaccctttaacctgtgaggacatccagggtcacaggtgaggtt 60
|||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 5 ggcctctgggtccctgagaccctttaacctgtgaggacgtccagggtcacaggtgaggtt 64
Query: 61 cttgggagcctggcg 75
|||||||||||||||
Sbjct: 65 cttgggagcctggcg 79
>32721_rno-mir-125a:mirbase
Length = 85
Score = 133 bits (67), Expect = 2e-32
Identities = 73/75 (97%)
Strand = Plus / Plus
Query: 1 ggcctctgagtccctgagaccctttaacctgtgaggacatccagggtcacaggtgaggtt 60
|||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 5 ggcctctgggtccctgagaccctttaacctgtgaggacgtccagggtcacaggtgaggtt 64
Query: 61 cttgggagcctggcg 75
|||||||||||||||
Sbjct: 65 cttgggagcctggcg 79
>27009_eca-mir-125a:mirbase
Length = 68
Score = 127 bits (64), Expect = 1e-30
Identities = 64/64 (100%)
Strand = Plus / Plus
Query: 10 gtccctgagaccctttaacctgtgaggacatccagggtcacaggtgaggttcttgggagc 69
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5 gtccctgagaccctttaacctgtgaggacatccagggtcacaggtgaggttcttgggagc 64
Query: 70 ctgg 73
||||
Sbjct: 65 ctgg 68
>27010_eca-mir-125a:mirbase
Length = 68
Score = 127 bits (64), Expect = 1e-30
Identities = 64/64 (100%)
Strand = Plus / Plus
Query: 10 gtccctgagaccctttaacctgtgaggacatccagggtcacaggtgaggttcttgggagc 69
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5 gtccctgagaccctttaacctgtgaggacatccagggtcacaggtgaggttcttgggagc 64
Query: 70 ctgg 73
||||
Sbjct: 65 ctgg 68
>30209_ptr-mir-125a:mirbase
Length = 85
Score = 127 bits (64), Expect = 1e-30
Identities = 64/64 (100%)
Strand = Plus / Plus
Query: 10 gtccctgagaccctttaacctgtgaggacatccagggtcacaggtgaggttcttgggagc 69
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13 gtccctgagaccctttaacctgtgaggacatccagggtcacaggtgaggttcttgggagc 72
Query: 70 ctgg 73
||||
Sbjct: 73 ctgg 76
>26689_cfa-mir-125a:mirbase
Length = 60
Score = 119 bits (60), Expect = 3e-28
Identities = 60/60 (100%)
Strand = Plus / Plus
Query: 11 tccctgagaccctttaacctgtgaggacatccagggtcacaggtgaggttcttgggagcc 70
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 tccctgagaccctttaacctgtgaggacatccagggtcacaggtgaggttcttgggagcc 60
>31841_mmu-mir-125a:mirbase
Length = 68
Score = 119 bits (60), Expect = 3e-28
Identities = 63/64 (98%)
Strand = Plus / Plus
Query: 10 gtccctgagaccctttaacctgtgaggacatccagggtcacaggtgaggttcttgggagc 69
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 5 gtccctgagaccctttaacctgtgaggacgtccagggtcacaggtgaggttcttgggagc 64
Query: 70 ctgg 73
||||
Sbjct: 65 ctgg 68
>31842_mmu-mir-125a:mirbase
Length = 68
Score = 119 bits (60), Expect = 3e-28
Identities = 63/64 (98%)
Strand = Plus / Plus
Query: 10 gtccctgagaccctttaacctgtgaggacatccagggtcacaggtgaggttcttgggagc 69
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 5 gtccctgagaccctttaacctgtgaggacgtccagggtcacaggtgaggttcttgggagc 64
Query: 70 ctgg 73
||||
Sbjct: 65 ctgg 68
>34278_dre-mir-125a-2:mirbase
Length = 107
Score = 61.9 bits (31), Expect = 6e-11
Identities = 56/63 (88%), Gaps = 1/63 (1%)
Strand = Plus / Plus
Query: 5 tctgagtccctgagaccctttaacctgtgaggacatccagggtcacaggtgaggttcttg 64
|||| ||||||||||||||| ||||||||| | | |||| ||||||||||||||| ||||
Sbjct: 23 tctgtgtccctgagaccctt-aacctgtgatgtcttccaaggtcacaggtgaggtccttg 81
Query: 65 gga 67
|||
Sbjct: 82 gga 84
>34588_fru-mir-125a:mirbase
Length = 66
Score = 52.0 bits (26), Expect = 6e-08
Identities = 51/58 (87%), Gaps = 1/58 (1%)
Strand = Plus / Plus
Query: 10 gtccctgagaccctttaacctgtgaggacatccagggtcacaggtgaggttcttggga 67
||||||||||||||| ||||||||| || || | ||||||||||||||| |||||||
Sbjct: 8 gtccctgagaccctt-aacctgtgatgatatgaaaggtcacaggtgaggtccttggga 64
>34277_dre-mir-125a-1:mirbase
Length = 83
Score = 44.1 bits (22), Expect = 1e-05
Identities = 44/50 (88%), Gaps = 1/50 (2%)
Strand = Plus / Plus
Query: 10 gtccctgagaccctttaacctgtgaggacatccagggtcacaggtgaggt 59
||||||||||||| ||||||||||||| || | |||||||||||||||
Sbjct: 13 gtccctgagaccc-ttaacctgtgaggtcaaactaggtcacaggtgaggt 61
>34735_tni-mir-125a:mirbase
Length = 63
Score = 44.1 bits (22), Expect = 1e-05
Identities = 50/58 (86%), Gaps = 1/58 (1%)
Strand = Plus / Plus
Query: 10 gtccctgagaccctttaacctgtgaggacatccagggtcacaggtgaggttcttggga 67
||||||||||||||| ||||||||| || | | ||||||||||||||| |||||||
Sbjct: 5 gtccctgagaccctt-aacctgtgataacgtgaaaggtcacaggtgaggtccttggga 61
>25764_xtr-mir-125a:mirbase
Length = 62
Score = 40.1 bits (20), Expect = 2e-04
Identities = 27/28 (96%), Gaps = 1/28 (3%)
Strand = Plus / Plus
Query: 10 gtccctgagaccctttaacctgtgagga 37
||||||||||||| ||||||||||||||
Sbjct: 1 gtccctgagaccc-ttaacctgtgagga 27
