miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>33204_bta-mir-126:mirbase
Length = 73
Score = 141 bits (71), Expect = 7e-35
Identities = 71/71 (100%)
Strand = Plus / Plus
Query: 2 gacgggacattattacttttggtacgcgctgtgacacttcaaactcgtaccgtgagtaat 61
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2 gacgggacattattacttttggtacgcgctgtgacacttcaaactcgtaccgtgagtaat 61
Query: 62 aatgcgctgtc 72
|||||||||||
Sbjct: 62 aatgcgctgtc 72
>27013_eca-mir-126:mirbase
Length = 73
Score = 137 bits (69), Expect = 1e-33
Identities = 72/73 (98%)
Strand = Plus / Plus
Query: 1 cgacgggacattattacttttggtacgcgctgtgacacttcaaactcgtaccgtgagtaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 cgacgggacattattacttttggtacgcgctgtgacacttcaaactcgtaccgtgagtaa 60
Query: 61 taatgcgctgtcg 73
|||||||| ||||
Sbjct: 61 taatgcgccgtcg 73
>27014_eca-mir-126:mirbase
Length = 73
Score = 137 bits (69), Expect = 1e-33
Identities = 72/73 (98%)
Strand = Plus / Plus
Query: 1 cgacgggacattattacttttggtacgcgctgtgacacttcaaactcgtaccgtgagtaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 cgacgggacattattacttttggtacgcgctgtgacacttcaaactcgtaccgtgagtaa 60
Query: 61 taatgcgctgtcg 73
|||||||| ||||
Sbjct: 61 taatgcgccgtcg 73
>27721_mml-mir-126:mirbase
Length = 85
Score = 135 bits (68), Expect = 5e-33
Identities = 68/68 (100%)
Strand = Plus / Plus
Query: 5 gggacattattacttttggtacgcgctgtgacacttcaaactcgtaccgtgagtaataat 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11 gggacattattacttttggtacgcgctgtgacacttcaaactcgtaccgtgagtaataat 70
Query: 65 gcgctgtc 72
||||||||
Sbjct: 71 gcgctgtc 78
>28434_hsa-mir-126:mirbase
Length = 85
Score = 135 bits (68), Expect = 5e-33
Identities = 68/68 (100%)
Strand = Plus / Plus
Query: 1 cgacgggacattattacttttggtacgcgctgtgacacttcaaactcgtaccgtgagtaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7 cgacgggacattattacttttggtacgcgctgtgacacttcaaactcgtaccgtgagtaa 66
Query: 61 taatgcgc 68
||||||||
Sbjct: 67 taatgcgc 74
>30212_ptr-mir-126:mirbase
Length = 84
Score = 135 bits (68), Expect = 5e-33
Identities = 68/68 (100%)
Strand = Plus / Plus
Query: 1 cgacgggacattattacttttggtacgcgctgtgacacttcaaactcgtaccgtgagtaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6 cgacgggacattattacttttggtacgcgctgtgacacttcaaactcgtaccgtgagtaa 65
Query: 61 taatgcgc 68
||||||||
Sbjct: 66 taatgcgc 73
>30821_ppy-mir-126:mirbase
Length = 81
Score = 135 bits (68), Expect = 5e-33
Identities = 68/68 (100%)
Strand = Plus / Plus
Query: 1 cgacgggacattattacttttggtacgcgctgtgacacttcaaactcgtaccgtgagtaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7 cgacgggacattattacttttggtacgcgctgtgacacttcaaactcgtaccgtgagtaa 66
Query: 61 taatgcgc 68
||||||||
Sbjct: 67 taatgcgc 74
>25944_gga-mir-126:mirbase
Length = 84
Score = 125 bits (63), Expect = 4e-30
Identities = 63/63 (100%)
Strand = Plus / Plus
Query: 9 cattattacttttggtacgcgctgtgacacttcaaactcgtaccgtgagtaataatgcgc 68
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14 cattattacttttggtacgcgctgtgacacttcaaactcgtaccgtgagtaataatgcgc 73
Query: 69 tgt 71
|||
Sbjct: 74 tgt 76
>26455_tgu-mir-126:mirbase
Length = 132
Score = 125 bits (63), Expect = 4e-30
Identities = 63/63 (100%)
Strand = Plus / Plus
Query: 9 cattattacttttggtacgcgctgtgacacttcaaactcgtaccgtgagtaataatgcgc 68
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 64 cattattacttttggtacgcgctgtgacacttcaaactcgtaccgtgagtaataatgcgc 123
Query: 69 tgt 71
|||
Sbjct: 124 tgt 126
>31847_mmu-mir-126:mirbase
Length = 73
Score = 121 bits (61), Expect = 7e-29
Identities = 61/61 (100%)
Strand = Plus / Plus
Query: 8 acattattacttttggtacgcgctgtgacacttcaaactcgtaccgtgagtaataatgcg 67
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8 acattattacttttggtacgcgctgtgacacttcaaactcgtaccgtgagtaataatgcg 67
Query: 68 c 68
|
Sbjct: 68 c 68
>31848_mmu-mir-126:mirbase
Length = 73
Score = 121 bits (61), Expect = 7e-29
Identities = 61/61 (100%)
Strand = Plus / Plus
Query: 8 acattattacttttggtacgcgctgtgacacttcaaactcgtaccgtgagtaataatgcg 67
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8 acattattacttttggtacgcgctgtgacacttcaaactcgtaccgtgagtaataatgcg 67
Query: 68 c 68
|
Sbjct: 68 c 68
>32725_rno-mir-126:mirbase
Length = 73
Score = 119 bits (60), Expect = 3e-28
Identities = 60/60 (100%)
Strand = Plus / Plus
Query: 8 acattattacttttggtacgcgctgtgacacttcaaactcgtaccgtgagtaataatgcg 67
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8 acattattacttttggtacgcgctgtgacacttcaaactcgtaccgtgagtaataatgcg 67
>33060_rno-mir-3567:mirbase
Length = 118
Score = 119 bits (60), Expect = 3e-28
Identities = 60/60 (100%)
Strand = Plus / Minus
Query: 8 acattattacttttggtacgcgctgtgacacttcaaactcgtaccgtgagtaataatgcg 67
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 87 acattattacttttggtacgcgctgtgacacttcaaactcgtaccgtgagtaataatgcg 28
>26692_cfa-mir-126:mirbase
Length = 59
Score = 117 bits (59), Expect = 1e-27
Identities = 59/59 (100%)
Strand = Plus / Plus
Query: 9 cattattacttttggtacgcgctgtgacacttcaaactcgtaccgtgagtaataatgcg 67
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 cattattacttttggtacgcgctgtgacacttcaaactcgtaccgtgagtaataatgcg 59
>27377_mdo-mir-126:mirbase
Length = 69
Score = 111 bits (56), Expect = 7e-26
Identities = 59/60 (98%)
Strand = Plus / Plus
Query: 9 cattattacttttggtacgcgctgtgacacttcaaactcgtaccgtgagtaataatgcgc 68
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 5 cattattacttttggtacgcgctgtgacacatcaaactcgtaccgtgagtaataatgcgc 64
>31481_oan-mir-126:mirbase
Length = 110
Score = 109 bits (55), Expect = 3e-25
Identities = 58/59 (98%)
Strand = Plus / Plus
Query: 9 cattattacttttggtacgcgctgtgacacttcaaactcgtaccgtgagtaataatgcg 67
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 29 cattattacttttggtacgcgctgtgacgcttcaaactcgtaccgtgagtaataatgcg 87
>25767_xtr-mir-126:mirbase
Length = 69
Score = 103 bits (52), Expect = 2e-23
Identities = 58/60 (96%)
Strand = Plus / Plus
Query: 9 cattattacttttggtacgcgctgtgacacttcaaactcgtaccgtgagtaataatgcgc 68
|||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||
Sbjct: 8 cattattacttttggtacgcgctgtgtcacatcaaactcgtaccgtgagtaataatgcgc 67
>34590_fru-mir-126:mirbase
Length = 63
Score = 75.8 bits (38), Expect = 4e-15
Identities = 53/58 (91%)
Strand = Plus / Plus
Query: 9 cattattacttttggtacgcgctgtgacacttcaaactcgtaccgtgagtaataatgc 66
||||||||||||||||||||||| || |||| ||||||||||||||||||||||||
Sbjct: 6 cattattacttttggtacgcgctatgccactctcaactcgtaccgtgagtaataatgc 63
>34737_tni-mir-126:mirbase
Length = 63
Score = 75.8 bits (38), Expect = 4e-15
Identities = 53/58 (91%)
Strand = Plus / Plus
Query: 9 cattattacttttggtacgcgctgtgacacttcaaactcgtaccgtgagtaataatgc 66
||||||||||||||||||||||| || |||| ||||||||||||||||||||||||
Sbjct: 6 cattattacttttggtacgcgctatgccactctcaactcgtaccgtgagtaataatgc 63
>34284_dre-mir-126b:mirbase
Length = 103
Score = 69.9 bits (35), Expect = 2e-13
Identities = 56/63 (88%)
Strand = Plus / Plus
Query: 9 cattattacttttggtacgcgctgtgacacttcaaactcgtaccgtgagtaataatgcgc 68
||||||||||||||||||||||| || |||| |||||||||||||||||||| ||| |
Sbjct: 23 cattattacttttggtacgcgctatgccactctcaactcgtaccgtgagtaatagtgcac 82
Query: 69 tgt 71
|||
Sbjct: 83 tgt 85
>34283_dre-mir-126a:mirbase
Length = 101
Score = 63.9 bits (32), Expect = 1e-11
Identities = 57/64 (89%), Gaps = 1/64 (1%)
Strand = Plus / Plus
Query: 9 cattattacttttggtacgcgctgtgacact-tcaaactcgtaccgtgagtaataatgcg 67
||||||||||||||||||||||| | || |||||||||||||||||||||||||||
Sbjct: 26 cattattacttttggtacgcgctaggccagactcaaactcgtaccgtgagtaataatgca 85
Query: 68 ctgt 71
||||
Sbjct: 86 ctgt 89
>24832_cin-mir-126:mirbase
Length = 81
Score = 38.2 bits (19), Expect = 8e-04
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 45 ctcgtaccgtgagtaataa 63
|||||||||||||||||||
Sbjct: 49 ctcgtaccgtgagtaataa 67
>25326_csa-mir-126:mirbase
Length = 101
Score = 38.2 bits (19), Expect = 8e-04
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 45 ctcgtaccgtgagtaataa 63
|||||||||||||||||||
Sbjct: 65 ctcgtaccgtgagtaataa 83
>25475_pma-mir-126:mirbase
Length = 72
Score = 38.2 bits (19), Expect = 8e-04
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 45 ctcgtaccgtgagtaataa 63
|||||||||||||||||||
Sbjct: 44 ctcgtaccgtgagtaataa 62
