miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>27727_mml-mir-129-2:mirbase
Length = 92
Score = 159 bits (80), Expect = 4e-40
Identities = 80/80 (100%)
Strand = Plus / Plus
Query: 1 cttcgtgaatctttttgcggtctgggcttgctgtacataactcaatagccggaagccctt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6 cttcgtgaatctttttgcggtctgggcttgctgtacataactcaatagccggaagccctt 65
Query: 61 accccaaaaagcattcgcgg 80
||||||||||||||||||||
Sbjct: 66 accccaaaaagcattcgcgg 85
>32730_rno-mir-129-2:mirbase
Length = 97
Score = 151 bits (76), Expect = 9e-38
Identities = 79/80 (98%)
Strand = Plus / Plus
Query: 1 cttcgtgaatctttttgcggtctgggcttgctgtacataactcaatagccggaagccctt 60
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9 cttcgcgaatctttttgcggtctgggcttgctgtacataactcaatagccggaagccctt 68
Query: 61 accccaaaaagcattcgcgg 80
||||||||||||||||||||
Sbjct: 69 accccaaaaagcattcgcgg 88
>33209_bta-mir-129-2:mirbase
Length = 94
Score = 151 bits (76), Expect = 9e-38
Identities = 79/80 (98%)
Strand = Plus / Plus
Query: 1 cttcgtgaatctttttgcggtctgggcttgctgtacataactcaatagccggaagccctt 60
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6 cttcgcgaatctttttgcggtctgggcttgctgtacataactcaatagccggaagccctt 65
Query: 61 accccaaaaagcattcgcgg 80
||||||||||||||||||||
Sbjct: 66 accccaaaaagcattcgcgg 85
>33210_bta-mir-129-2:mirbase
Length = 94
Score = 151 bits (76), Expect = 9e-38
Identities = 79/80 (98%)
Strand = Plus / Plus
Query: 1 cttcgtgaatctttttgcggtctgggcttgctgtacataactcaatagccggaagccctt 60
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6 cttcgcgaatctttttgcggtctgggcttgctgtacataactcaatagccggaagccctt 65
Query: 61 accccaaaaagcattcgcgg 80
||||||||||||||||||||
Sbjct: 66 accccaaaaagcattcgcgg 85
>31854_mmu-mir-129-2:mirbase
Length = 90
Score = 149 bits (75), Expect = 3e-37
Identities = 78/79 (98%)
Strand = Plus / Plus
Query: 2 ttcgtgaatctttttgcggtctgggcttgctgtacataactcaatagccggaagccctta 61
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6 ttcgcgaatctttttgcggtctgggcttgctgtacataactcaatagccggaagccctta 65
Query: 62 ccccaaaaagcattcgcgg 80
|||||||||||||||||||
Sbjct: 66 ccccaaaaagcattcgcgg 84
>31855_mmu-mir-129-2:mirbase
Length = 90
Score = 149 bits (75), Expect = 3e-37
Identities = 78/79 (98%)
Strand = Plus / Plus
Query: 2 ttcgtgaatctttttgcggtctgggcttgctgtacataactcaatagccggaagccctta 61
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6 ttcgcgaatctttttgcggtctgggcttgctgtacataactcaatagccggaagccctta 65
Query: 62 ccccaaaaagcattcgcgg 80
|||||||||||||||||||
Sbjct: 66 ccccaaaaagcattcgcgg 84
>27020_eca-mir-129b:mirbase
Length = 74
Score = 143 bits (72), Expect = 2e-35
Identities = 72/72 (100%)
Strand = Plus / Plus
Query: 7 gaatctttttgcggtctgggcttgctgtacataactcaatagccggaagcccttacccca 66
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3 gaatctttttgcggtctgggcttgctgtacataactcaatagccggaagcccttacccca 62
Query: 67 aaaagcattcgc 78
||||||||||||
Sbjct: 63 aaaagcattcgc 74
>27021_eca-mir-129b:mirbase
Length = 74
Score = 143 bits (72), Expect = 2e-35
Identities = 72/72 (100%)
Strand = Plus / Plus
Query: 7 gaatctttttgcggtctgggcttgctgtacataactcaatagccggaagcccttacccca 66
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3 gaatctttttgcggtctgggcttgctgtacataactcaatagccggaagcccttacccca 62
Query: 67 aaaagcattcgc 78
||||||||||||
Sbjct: 63 aaaagcattcgc 74
>28440_hsa-mir-129-2:mirbase
Length = 90
Score = 143 bits (72), Expect = 2e-35
Identities = 78/80 (97%)
Strand = Plus / Plus
Query: 1 cttcgtgaatctttttgcggtctgggcttgctgtacataactcaatagccggaagccctt 60
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5 cttcgcgaatctttttgcggtctgggcttgctgtacataactcaatagccggaagccctt 64
Query: 61 accccaaaaagcattcgcgg 80
||||||||||||||| ||||
Sbjct: 65 accccaaaaagcatttgcgg 84
>28441_hsa-mir-129-2:mirbase
Length = 90
Score = 143 bits (72), Expect = 2e-35
Identities = 78/80 (97%)
Strand = Plus / Plus
Query: 1 cttcgtgaatctttttgcggtctgggcttgctgtacataactcaatagccggaagccctt 60
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5 cttcgcgaatctttttgcggtctgggcttgctgtacataactcaatagccggaagccctt 64
Query: 61 accccaaaaagcattcgcgg 80
||||||||||||||| ||||
Sbjct: 65 accccaaaaagcatttgcgg 84
>30217_ptr-mir-129-2:mirbase
Length = 89
Score = 143 bits (72), Expect = 2e-35
Identities = 78/80 (97%)
Strand = Plus / Plus
Query: 1 cttcgtgaatctttttgcggtctgggcttgctgtacataactcaatagccggaagccctt 60
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4 cttcgcgaatctttttgcggtctgggcttgctgtacataactcaatagccggaagccctt 63
Query: 61 accccaaaaagcattcgcgg 80
||||||||||||||| ||||
Sbjct: 64 accccaaaaagcatttgcgg 83
>30826_ppy-mir-129-2:mirbase
Length = 90
Score = 143 bits (72), Expect = 2e-35
Identities = 78/80 (97%)
Strand = Plus / Plus
Query: 1 cttcgtgaatctttttgcggtctgggcttgctgtacataactcaatagccggaagccctt 60
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5 cttcgcgaatctttttgcggtctgggcttgctgtacataactcaatagccggaagccctt 64
Query: 61 accccaaaaagcattcgcgg 80
||||||||||||||| ||||
Sbjct: 65 accccaaaaagcatttgcgg 84
>26697_cfa-mir-129-2:mirbase
Length = 63
Score = 117 bits (59), Expect = 1e-27
Identities = 62/63 (98%)
Strand = Plus / Plus
Query: 11 ctttttgcggtctgggcttgctgtacataactcaatagccggaagcccttaccccaaaaa 70
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 1 ctttttgcggtctgggcttgctgtacataactcgatagccggaagcccttaccccaaaaa 60
Query: 71 gca 73
|||
Sbjct: 61 gca 63
>26458_tgu-mir-129:mirbase
Length = 83
Score = 105 bits (53), Expect = 5e-24
Identities = 75/81 (92%), Gaps = 1/81 (1%)
Strand = Plus / Plus
Query: 1 cttcgtgaatctttttgcggtctgggcttgctgtacataactcaatagcc-ggaagccct 59
||||| |||||||||||||||||||||||||||||||||||| || || |||||||||
Sbjct: 1 cttcgcgaatctttttgcggtctgggcttgctgtacataactacctacccgggaagccct 60
Query: 60 taccccaaaaagcattcgcgg 80
|||||||||||||||||||||
Sbjct: 61 taccccaaaaagcattcgcgg 81
>25770_xtr-mir-129-1:mirbase
Length = 90
Score = 75.8 bits (38), Expect = 4e-15
Identities = 66/74 (89%), Gaps = 1/74 (1%)
Strand = Plus / Plus
Query: 8 aatctttttgcggtctgggcttgctgtacataactcaatagcc-ggaagcccttacccca 66
|||||||||||||||||||||||||||| ||| | ||||| ||||||||||||||||
Sbjct: 11 aatctttttgcggtctgggcttgctgtatgtaaatacctagccgggaagcccttacccca 70
Query: 67 aaaagcattcgcgg 80
||||||||| ||||
Sbjct: 71 aaaagcatttgcgg 84
>25478_pma-mir-129a:mirbase
Length = 88
Score = 73.8 bits (37), Expect = 2e-14
Identities = 66/72 (91%), Gaps = 4/72 (5%)
Strand = Plus / Plus
Query: 7 gaatctttttgcggtctgggcttgctgtacataactcaatagccgg-aagcccttacccc 65
||||||||||||||| |||||||||||| ||| || ||||||||| |||||||||||||
Sbjct: 11 gaatctttttgcggtttgggcttgctgttcat--ct-aatagccggcaagcccttacccc 67
Query: 66 aaaaagcattcg 77
||||||||||||
Sbjct: 68 aaaaagcattcg 79
>34594_fru-mir-129-2:mirbase
Length = 73
Score = 69.9 bits (35), Expect = 3e-13
Identities = 57/63 (90%), Gaps = 1/63 (1%)
Strand = Plus / Plus
Query: 10 tctttttgcggtctgggcttgctgtacataactcaatagcc-ggaagcccttaccccaaa 68
||||||||||||||||||||||||| | ||| || ||||| ||||||||||||||||||
Sbjct: 5 tctttttgcggtctgggcttgctgttcctaaggcagtagccaggaagcccttaccccaaa 64
Query: 69 aag 71
|||
Sbjct: 65 aag 67
>34741_tni-mir-129-2:mirbase
Length = 71
Score = 69.9 bits (35), Expect = 3e-13
Identities = 57/63 (90%), Gaps = 1/63 (1%)
Strand = Plus / Plus
Query: 10 tctttttgcggtctgggcttgctgtacataactcaatagcc-ggaagcccttaccccaaa 68
||||||||||||||||||||||||| | ||| || ||||| ||||||||||||||||||
Sbjct: 4 tctttttgcggtctgggcttgctgttcctaaggcagtagccaggaagcccttaccccaaa 63
Query: 69 aag 71
|||
Sbjct: 64 aag 66
>34740_tni-mir-129-1:mirbase
Length = 85
Score = 63.9 bits (32), Expect = 2e-11
Identities = 64/74 (86%), Gaps = 3/74 (4%)
Strand = Plus / Plus
Query: 7 gaatctttttgcggtctgggcttgctgtacataactcaatagccggaagcccttacccca 66
|||||||||||||||||||||||||||| | ||| | ||||||||||||||||||
Sbjct: 10 gaatctttttgcggtctgggcttgctgttctctgctc---acccggaagcccttacccca 66
Query: 67 aaaagcattcgcgg 80
||||||||| ||||
Sbjct: 67 aaaagcatttgcgg 80
>34288_dre-mir-129-2:mirbase
Length = 87
Score = 61.9 bits (31), Expect = 6e-11
Identities = 66/76 (86%), Gaps = 5/76 (6%)
Strand = Plus / Plus
Query: 7 gaatctttttgcggtctgggcttgctgtacataac--tcaatagccggaagcccttaccc 64
|||||||||||||||||||||||||||| | ||| ||||| ||||||||||||||
Sbjct: 10 gaatctttttgcggtctgggcttgctgttctcaactatcaat---gggaagcccttaccc 66
Query: 65 caaaaagcattcgcgg 80
||||||||||| ||||
Sbjct: 67 caaaaagcatttgcgg 82
>27379_mdo-mir-129:mirbase
Length = 74
Score = 58.0 bits (29), Expect = 1e-09
Identities = 58/65 (89%), Gaps = 2/65 (3%)
Strand = Plus / Plus
Query: 9 atctttttgcggtctgggcttgctg-tacataactcaatag-ccggaagcccttacccca 66
||||||||||||||||||||||||| | | ||| ||| ||| | ||||||||||||||||
Sbjct: 4 atctttttgcggtctgggcttgctgttccttaaatcagtagtcaggaagcccttacccca 63
Query: 67 aaaag 71
|||||
Sbjct: 64 aaaag 68
>34593_fru-mir-129-1:mirbase
Length = 89
Score = 56.0 bits (28), Expect = 4e-09
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 7 gaatctttttgcggtctgggcttgctgt 34
||||||||||||||||||||||||||||
Sbjct: 10 gaatctttttgcggtctgggcttgctgt 37
>27018_eca-mir-129a:mirbase
Length = 73
Score = 52.0 bits (26), Expect = 6e-08
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 9 atctttttgcggtctgggcttgctgt 34
||||||||||||||||||||||||||
Sbjct: 4 atctttttgcggtctgggcttgctgt 29
>27019_eca-mir-129a:mirbase
Length = 73
Score = 52.0 bits (26), Expect = 6e-08
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 9 atctttttgcggtctgggcttgctgt 34
||||||||||||||||||||||||||
Sbjct: 4 atctttttgcggtctgggcttgctgt 29
>27725_mml-mir-129:mirbase
Length = 72
Score = 52.0 bits (26), Expect = 6e-08
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 9 atctttttgcggtctgggcttgctgt 34
||||||||||||||||||||||||||
Sbjct: 3 atctttttgcggtctgggcttgctgt 28
>27726_mml-mir-129:mirbase
Length = 72
Score = 52.0 bits (26), Expect = 6e-08
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 9 atctttttgcggtctgggcttgctgt 34
||||||||||||||||||||||||||
Sbjct: 3 atctttttgcggtctgggcttgctgt 28
>28439_hsa-mir-129-1:mirbase
Length = 72
Score = 52.0 bits (26), Expect = 6e-08
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 9 atctttttgcggtctgggcttgctgt 34
||||||||||||||||||||||||||
Sbjct: 3 atctttttgcggtctgggcttgctgt 28
>30216_ptr-mir-129-1:mirbase
Length = 71
Score = 52.0 bits (26), Expect = 6e-08
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 9 atctttttgcggtctgggcttgctgt 34
||||||||||||||||||||||||||
Sbjct: 2 atctttttgcggtctgggcttgctgt 27
>30825_ppy-mir-129-1:mirbase
Length = 72
Score = 52.0 bits (26), Expect = 6e-08
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 9 atctttttgcggtctgggcttgctgt 34
||||||||||||||||||||||||||
Sbjct: 3 atctttttgcggtctgggcttgctgt 28
>31484_oan-mir-129:mirbase
Length = 128
Score = 52.0 bits (26), Expect = 6e-08
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 9 atctttttgcggtctgggcttgctgt 34
||||||||||||||||||||||||||
Sbjct: 28 atctttttgcggtctgggcttgctgt 53
>31852_mmu-mir-129-1:mirbase
Length = 73
Score = 52.0 bits (26), Expect = 6e-08
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 9 atctttttgcggtctgggcttgctgt 34
||||||||||||||||||||||||||
Sbjct: 4 atctttttgcggtctgggcttgctgt 29
Score = 42.1 bits (21), Expect = 6e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 51 ggaagcccttaccccaaaaag 71
|||||||||||||||||||||
Sbjct: 47 ggaagcccttaccccaaaaag 67
>31853_mmu-mir-129-1:mirbase
Length = 73
Score = 52.0 bits (26), Expect = 6e-08
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 9 atctttttgcggtctgggcttgctgt 34
||||||||||||||||||||||||||
Sbjct: 4 atctttttgcggtctgggcttgctgt 29
Score = 42.1 bits (21), Expect = 6e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 51 ggaagcccttaccccaaaaag 71
|||||||||||||||||||||
Sbjct: 47 ggaagcccttaccccaaaaag 67
>33208_bta-mir-129-1:mirbase
Length = 72
Score = 52.0 bits (26), Expect = 6e-08
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 9 atctttttgcggtctgggcttgctgt 34
||||||||||||||||||||||||||
Sbjct: 3 atctttttgcggtctgggcttgctgt 28
>33978_ssc-mir-129b:mirbase
Length = 84
Score = 52.0 bits (26), Expect = 6e-08
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 9 atctttttgcggtctgggcttgctgt 34
||||||||||||||||||||||||||
Sbjct: 9 atctttttgcggtctgggcttgctgt 34
>34287_dre-mir-129-1:mirbase
Length = 90
Score = 52.0 bits (26), Expect = 6e-08
Identities = 58/65 (89%), Gaps = 4/65 (6%)
Strand = Plus / Plus
Query: 10 tctttttgcggtctgggcttgctgtacat--aactcaatagcc-ggaagcccttacccca 66
||||||||||||||||||||||||| | | ||| || ||||| ||||||||||||||||
Sbjct: 13 tctttttgcggtctgggcttgctgttccttgaac-cagtagccaggaagcccttacccca 71
Query: 67 aaaag 71
|||||
Sbjct: 72 aaaag 76
>32729_rno-mir-129-1:mirbase
Length = 72
Score = 50.1 bits (25), Expect = 2e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 10 tctttttgcggtctgggcttgctgt 34
|||||||||||||||||||||||||
Sbjct: 5 tctttttgcggtctgggcttgctgt 29
>25771_xtr-mir-129-2:mirbase
Length = 82
Score = 48.1 bits (24), Expect = 9e-07
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 11 ctttttgcggtctgggcttgctgt 34
||||||||||||||||||||||||
Sbjct: 9 ctttttgcggtctgggcttgctgt 32
>26696_cfa-mir-129-1:mirbase
Length = 65
Score = 48.1 bits (24), Expect = 9e-07
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 11 ctttttgcggtctgggcttgctgt 34
||||||||||||||||||||||||
Sbjct: 1 ctttttgcggtctgggcttgctgt 24
Score = 42.1 bits (21), Expect = 6e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 51 ggaagcccttaccccaaaaag 71
|||||||||||||||||||||
Sbjct: 43 ggaagcccttaccccaaaaag 63