miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>33211_bta-mir-130a:mirbase
Length = 89
Score = 133 bits (67), Expect = 2e-32
Identities = 73/75 (97%)
Strand = Plus / Plus
Query: 1 cgggccggagctcttttcacattgtgctactgtctgcacctatcactagcagtgcaatgt 60
||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||
Sbjct: 6 cgggccggagctcttttcacattgtgctactgtctgcgcctgtcactagcagtgcaatgt 65
Query: 61 taaaagggcattggc 75
|||||||||||||||
Sbjct: 66 taaaagggcattggc 80
>27728_mml-mir-130a:mirbase
Length = 81
Score = 131 bits (66), Expect = 8e-32
Identities = 72/74 (97%)
Strand = Plus / Plus
Query: 3 ggccggagctcttttcacattgtgctactgtctgcacctatcactagcagtgcaatgtta 62
|||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 8 ggccagagctcttttcacattgtgctactgtctgcacctgtcactagcagtgcaatgtta 67
Query: 63 aaagggcattggcc 76
||||||||||||||
Sbjct: 68 aaagggcattggcc 81
>28211_mne-mir-130a:mirbase
Length = 89
Score = 131 bits (66), Expect = 8e-32
Identities = 72/74 (97%)
Strand = Plus / Plus
Query: 3 ggccggagctcttttcacattgtgctactgtctgcacctatcactagcagtgcaatgtta 62
|||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 8 ggccagagctcttttcacattgtgctactgtctgcacctgtcactagcagtgcaatgtta 67
Query: 63 aaagggcattggcc 76
||||||||||||||
Sbjct: 68 aaagggcattggcc 81
>28303_ggo-mir-130a:mirbase
Length = 89
Score = 131 bits (66), Expect = 8e-32
Identities = 72/74 (97%)
Strand = Plus / Plus
Query: 3 ggccggagctcttttcacattgtgctactgtctgcacctatcactagcagtgcaatgtta 62
|||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 8 ggccagagctcttttcacattgtgctactgtctgcacctgtcactagcagtgcaatgtta 67
Query: 63 aaagggcattggcc 76
||||||||||||||
Sbjct: 68 aaagggcattggcc 81
>28442_hsa-mir-130a:mirbase
Length = 89
Score = 131 bits (66), Expect = 8e-32
Identities = 72/74 (97%)
Strand = Plus / Plus
Query: 3 ggccggagctcttttcacattgtgctactgtctgcacctatcactagcagtgcaatgtta 62
|||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 8 ggccagagctcttttcacattgtgctactgtctgcacctgtcactagcagtgcaatgtta 67
Query: 63 aaagggcattggcc 76
||||||||||||||
Sbjct: 68 aaagggcattggcc 81
>30090_ppa-mir-130a:mirbase
Length = 89
Score = 131 bits (66), Expect = 8e-32
Identities = 72/74 (97%)
Strand = Plus / Plus
Query: 3 ggccggagctcttttcacattgtgctactgtctgcacctatcactagcagtgcaatgtta 62
|||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 8 ggccagagctcttttcacattgtgctactgtctgcacctgtcactagcagtgcaatgtta 67
Query: 63 aaagggcattggcc 76
||||||||||||||
Sbjct: 68 aaagggcattggcc 81
>30218_ptr-mir-130a:mirbase
Length = 88
Score = 131 bits (66), Expect = 8e-32
Identities = 72/74 (97%)
Strand = Plus / Plus
Query: 3 ggccggagctcttttcacattgtgctactgtctgcacctatcactagcagtgcaatgtta 62
|||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 7 ggccagagctcttttcacattgtgctactgtctgcacctgtcactagcagtgcaatgtta 66
Query: 63 aaagggcattggcc 76
||||||||||||||
Sbjct: 67 aaagggcattggcc 80
>30827_ppy-mir-130a:mirbase
Length = 89
Score = 131 bits (66), Expect = 8e-32
Identities = 72/74 (97%)
Strand = Plus / Plus
Query: 3 ggccggagctcttttcacattgtgctactgtctgcacctatcactagcagtgcaatgtta 62
|||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 8 ggccagagctcttttcacattgtgctactgtctgcacctgtcactagcagtgcaatgtta 67
Query: 63 aaagggcattggcc 76
||||||||||||||
Sbjct: 68 aaagggcattggcc 81
>27380_mdo-mir-130a:mirbase
Length = 76
Score = 129 bits (65), Expect = 3e-31
Identities = 71/73 (97%)
Strand = Plus / Plus
Query: 3 ggccggagctcttttcacattgtgctactgtctgcacctatcactagcagtgcaatgtta 62
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 2 ggccagagctcttttcacattgtgctactgtctgcacctatcactagcagtgcaatgtaa 61
Query: 63 aaagggcattggc 75
|||||||||||||
Sbjct: 62 aaagggcattggc 74
>27022_eca-mir-130a:mirbase
Length = 64
Score = 119 bits (60), Expect = 3e-28
Identities = 63/64 (98%)
Strand = Plus / Plus
Query: 8 gagctcttttcacattgtgctactgtctgcacctatcactagcagtgcaatgttaaaagg 67
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 1 gagctcttttcacattgtgctactgtctgcacctaccactagcagtgcaatgttaaaagg 60
Query: 68 gcat 71
||||
Sbjct: 61 gcat 64
>26698_cfa-mir-130a:mirbase
Length = 62
Score = 115 bits (58), Expect = 5e-27
Identities = 61/62 (98%)
Strand = Plus / Plus
Query: 10 gctcttttcacattgtgctactgtctgcacctatcactagcagtgcaatgttaaaagggc 69
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 1 gctcttttcacattgtgctactgtctgcacctaccactagcagtgcaatgttaaaagggc 60
Query: 70 at 71
||
Sbjct: 61 at 62
>31485_oan-mir-130a:mirbase
Length = 122
Score = 91.7 bits (46), Expect = 7e-20
Identities = 55/58 (94%)
Strand = Plus / Plus
Query: 3 ggccggagctcttttcacattgtgctactgtctgcacctatcactagcagtgcaatgt 60
||||||||||||||||||||||||||||||||||| || ||||||||||||||||||
Sbjct: 24 ggccggagctcttttcacattgtgctactgtctgcgcccgtcactagcagtgcaatgt 81
>32731_rno-mir-130a:mirbase
Length = 88
Score = 91.7 bits (46), Expect = 7e-20
Identities = 67/74 (90%)
Strand = Plus / Plus
Query: 3 ggccggagctcttttcacattgtgctactgtctgcacctatcactagcagtgcaatgtta 62
||||||||||||||||||||||||||||||||| ||| | | | |||||||||||||||
Sbjct: 8 ggccggagctcttttcacattgtgctactgtctacacgtgtaccgagcagtgcaatgtta 67
Query: 63 aaagggcattggcc 76
||||||||| ||||
Sbjct: 68 aaagggcatcggcc 81
>33089_rno-mir-3590:mirbase
Length = 74
Score = 91.7 bits (46), Expect = 7e-20
Identities = 67/74 (90%)
Strand = Plus / Minus
Query: 3 ggccggagctcttttcacattgtgctactgtctgcacctatcactagcagtgcaatgtta 62
||||||||||||||||||||||||||||||||| ||| | | | |||||||||||||||
Sbjct: 74 ggccggagctcttttcacattgtgctactgtctacacgtgtaccgagcagtgcaatgtta 15
Query: 63 aaagggcattggcc 76
||||||||| ||||
Sbjct: 14 aaagggcatcggcc 1
>33090_rno-mir-3590:mirbase
Length = 74
Score = 91.7 bits (46), Expect = 7e-20
Identities = 67/74 (90%)
Strand = Plus / Minus
Query: 3 ggccggagctcttttcacattgtgctactgtctgcacctatcactagcagtgcaatgtta 62
||||||||||||||||||||||||||||||||| ||| | | | |||||||||||||||
Sbjct: 74 ggccggagctcttttcacattgtgctactgtctacacgtgtaccgagcagtgcaatgtta 15
Query: 63 aaagggcattggcc 76
||||||||| ||||
Sbjct: 14 aaagggcatcggcc 1
>31856_mmu-mir-130a:mirbase
Length = 64
Score = 63.9 bits (32), Expect = 2e-11
Identities = 57/64 (89%), Gaps = 1/64 (1%)
Strand = Plus / Plus
Query: 8 gagctcttttcacattgtgctactgtctgcacctatcactagcagtgcaatgttaaaagg 67
|||||||||||||||||||||||||||| || | | | ||||||||||||||||||||
Sbjct: 1 gagctcttttcacattgtgctactgtct-aacgtgtaccgagcagtgcaatgttaaaagg 59
Query: 68 gcat 71
||||
Sbjct: 60 gcat 63
>25772_xtr-mir-130a:mirbase
Length = 83
Score = 60.0 bits (30), Expect = 2e-10
Identities = 30/30 (100%)
Strand = Plus / Plus
Query: 48 agcagtgcaatgttaaaagggcattggcca 77
||||||||||||||||||||||||||||||
Sbjct: 51 agcagtgcaatgttaaaagggcattggcca 80
>25949_gga-mir-130c:mirbase
Length = 94
Score = 60.0 bits (30), Expect = 2e-10
Identities = 30/30 (100%)
Strand = Plus / Plus
Query: 48 agcagtgcaatgttaaaagggcattggcca 77
||||||||||||||||||||||||||||||
Sbjct: 58 agcagtgcaatgttaaaagggcattggcca 87
>26461_tgu-mir-130c:mirbase
Length = 112
Score = 60.0 bits (30), Expect = 2e-10
Identities = 30/30 (100%)
Strand = Plus / Plus
Query: 48 agcagtgcaatgttaaaagggcattggcca 77
||||||||||||||||||||||||||||||
Sbjct: 79 agcagtgcaatgttaaaagggcattggcca 108
>31486_oan-mir-130b:mirbase
Length = 129
Score = 60.0 bits (30), Expect = 2e-10
Identities = 30/30 (100%)
Strand = Plus / Plus
Query: 48 agcagtgcaatgttaaaagggcattggcca 77
||||||||||||||||||||||||||||||
Sbjct: 79 agcagtgcaatgttaaaagggcattggcca 108
>34289_dre-mir-130a-1:mirbase
Length = 85
Score = 60.0 bits (30), Expect = 2e-10
Identities = 30/30 (100%)
Strand = Plus / Plus
Query: 48 agcagtgcaatgttaaaagggcattggcca 77
||||||||||||||||||||||||||||||
Sbjct: 52 agcagtgcaatgttaaaagggcattggcca 81
>34290_dre-mir-130a-2:mirbase
Length = 85
Score = 60.0 bits (30), Expect = 2e-10
Identities = 30/30 (100%)
Strand = Plus / Plus
Query: 48 agcagtgcaatgttaaaagggcattggcca 77
||||||||||||||||||||||||||||||
Sbjct: 52 agcagtgcaatgttaaaagggcattggcca 81
>25774_xtr-mir-130c:mirbase
Length = 71
Score = 50.1 bits (25), Expect = 2e-07
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 47 tagcagtgcaatgttaaaagggcattggc 75
|||||||||||| ||||||||||||||||
Sbjct: 42 tagcagtgcaatattaaaagggcattggc 70
>25947_gga-mir-130a:mirbase
Length = 83
Score = 48.1 bits (24), Expect = 9e-07
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 48 agcagtgcaatgttaaaagggcattggc 75
||||||||||| ||||||||||||||||
Sbjct: 50 agcagtgcaatattaaaagggcattggc 77
>26459_tgu-mir-130a:mirbase
Length = 72
Score = 48.1 bits (24), Expect = 9e-07
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 48 agcagtgcaatgttaaaagggcattggc 75
||||||||||| ||||||||||||||||
Sbjct: 39 agcagtgcaatattaaaagggcattggc 66
>34292_dre-mir-130c-1:mirbase
Length = 141
Score = 48.1 bits (24), Expect = 9e-07
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 48 agcagtgcaatgttaaaagggcattggc 75
||||||||||| ||||||||||||||||
Sbjct: 78 agcagtgcaatattaaaagggcattggc 105
>34293_dre-mir-130c-2:mirbase
Length = 81
Score = 48.1 bits (24), Expect = 9e-07
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 48 agcagtgcaatgttaaaagggcattggc 75
||||||||||| ||||||||||||||||
Sbjct: 48 agcagtgcaatattaaaagggcattggc 75
>34595_fru-mir-130:mirbase
Length = 79
Score = 48.1 bits (24), Expect = 9e-07
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 48 agcagtgcaatgttaaaagggcattggc 75
||||||||||| ||||||||||||||||
Sbjct: 50 agcagtgcaatattaaaagggcattggc 77
>34742_tni-mir-130:mirbase
Length = 74
Score = 48.1 bits (24), Expect = 9e-07
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 48 agcagtgcaatgttaaaagggcattggc 75
||||||||||| ||||||||||||||||
Sbjct: 47 agcagtgcaatattaaaagggcattggc 74
>25480_pma-mir-130b:mirbase
Length = 90
Score = 40.1 bits (20), Expect = 2e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 51 agtgcaatgttaaaagggcattgg 74
|||||||||| |||||||||||||
Sbjct: 52 agtgcaatgtgaaaagggcattgg 75
>31487_oan-mir-130c:mirbase
Length = 89
Score = 40.1 bits (20), Expect = 2e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 48 agcagtgcaatgttaaaagggcat 71
|||||||||||| |||||||||||
Sbjct: 51 agcagtgcaatggtaaaagggcat 74
