miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>27746_mml-mir-142:mirbase
Length = 87
Score = 159 bits (80), Expect = 4e-40
Identities = 80/80 (100%)
Strand = Plus / Plus
Query: 1 gtgcagtcacccataaagtagaaagcactactaacagcactggagggtgtagtgtttcct 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5 gtgcagtcacccataaagtagaaagcactactaacagcactggagggtgtagtgtttcct 64
Query: 61 actttatggatgagtgtact 80
||||||||||||||||||||
Sbjct: 65 actttatggatgagtgtact 84
>27747_mml-mir-142:mirbase
Length = 87
Score = 159 bits (80), Expect = 4e-40
Identities = 80/80 (100%)
Strand = Plus / Plus
Query: 1 gtgcagtcacccataaagtagaaagcactactaacagcactggagggtgtagtgtttcct 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5 gtgcagtcacccataaagtagaaagcactactaacagcactggagggtgtagtgtttcct 64
Query: 61 actttatggatgagtgtact 80
||||||||||||||||||||
Sbjct: 65 actttatggatgagtgtact 84
>28461_hsa-mir-142:mirbase
Length = 87
Score = 159 bits (80), Expect = 4e-40
Identities = 80/80 (100%)
Strand = Plus / Plus
Query: 1 gtgcagtcacccataaagtagaaagcactactaacagcactggagggtgtagtgtttcct 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5 gtgcagtcacccataaagtagaaagcactactaacagcactggagggtgtagtgtttcct 64
Query: 61 actttatggatgagtgtact 80
||||||||||||||||||||
Sbjct: 65 actttatggatgagtgtact 84
>28462_hsa-mir-142:mirbase
Length = 87
Score = 159 bits (80), Expect = 4e-40
Identities = 80/80 (100%)
Strand = Plus / Plus
Query: 1 gtgcagtcacccataaagtagaaagcactactaacagcactggagggtgtagtgtttcct 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5 gtgcagtcacccataaagtagaaagcactactaacagcactggagggtgtagtgtttcct 64
Query: 61 actttatggatgagtgtact 80
||||||||||||||||||||
Sbjct: 65 actttatggatgagtgtact 84
>30234_ptr-mir-142:mirbase
Length = 86
Score = 159 bits (80), Expect = 4e-40
Identities = 80/80 (100%)
Strand = Plus / Plus
Query: 1 gtgcagtcacccataaagtagaaagcactactaacagcactggagggtgtagtgtttcct 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5 gtgcagtcacccataaagtagaaagcactactaacagcactggagggtgtagtgtttcct 64
Query: 61 actttatggatgagtgtact 80
||||||||||||||||||||
Sbjct: 65 actttatggatgagtgtact 84
>30845_ppy-mir-142:mirbase
Length = 87
Score = 159 bits (80), Expect = 4e-40
Identities = 80/80 (100%)
Strand = Plus / Plus
Query: 1 gtgcagtcacccataaagtagaaagcactactaacagcactggagggtgtagtgtttcct 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5 gtgcagtcacccataaagtagaaagcactactaacagcactggagggtgtagtgtttcct 64
Query: 61 actttatggatgagtgtact 80
||||||||||||||||||||
Sbjct: 65 actttatggatgagtgtact 84
>30846_ppy-mir-142:mirbase
Length = 87
Score = 159 bits (80), Expect = 4e-40
Identities = 80/80 (100%)
Strand = Plus / Plus
Query: 1 gtgcagtcacccataaagtagaaagcactactaacagcactggagggtgtagtgtttcct 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5 gtgcagtcacccataaagtagaaagcactactaacagcactggagggtgtagtgtttcct 64
Query: 61 actttatggatgagtgtact 80
||||||||||||||||||||
Sbjct: 65 actttatggatgagtgtact 84
>32747_rno-mir-142:mirbase
Length = 87
Score = 159 bits (80), Expect = 4e-40
Identities = 80/80 (100%)
Strand = Plus / Plus
Query: 1 gtgcagtcacccataaagtagaaagcactactaacagcactggagggtgtagtgtttcct 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5 gtgcagtcacccataaagtagaaagcactactaacagcactggagggtgtagtgtttcct 64
Query: 61 actttatggatgagtgtact 80
||||||||||||||||||||
Sbjct: 65 actttatggatgagtgtact 84
>32748_rno-mir-142:mirbase
Length = 87
Score = 159 bits (80), Expect = 4e-40
Identities = 80/80 (100%)
Strand = Plus / Plus
Query: 1 gtgcagtcacccataaagtagaaagcactactaacagcactggagggtgtagtgtttcct 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5 gtgcagtcacccataaagtagaaagcactactaacagcactggagggtgtagtgtttcct 64
Query: 61 actttatggatgagtgtact 80
||||||||||||||||||||
Sbjct: 65 actttatggatgagtgtact 84
>33228_bta-mir-142:mirbase
Length = 87
Score = 159 bits (80), Expect = 4e-40
Identities = 80/80 (100%)
Strand = Plus / Plus
Query: 1 gtgcagtcacccataaagtagaaagcactactaacagcactggagggtgtagtgtttcct 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5 gtgcagtcacccataaagtagaaagcactactaacagcactggagggtgtagtgtttcct 64
Query: 61 actttatggatgagtgtact 80
||||||||||||||||||||
Sbjct: 65 actttatggatgagtgtact 84
>33991_ssc-mir-142:mirbase
Length = 80
Score = 159 bits (80), Expect = 4e-40
Identities = 80/80 (100%)
Strand = Plus / Plus
Query: 1 gtgcagtcacccataaagtagaaagcactactaacagcactggagggtgtagtgtttcct 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 gtgcagtcacccataaagtagaaagcactactaacagcactggagggtgtagtgtttcct 60
Query: 61 actttatggatgagtgtact 80
||||||||||||||||||||
Sbjct: 61 actttatggatgagtgtact 80
>25962_gga-mir-142:mirbase
Length = 88
Score = 137 bits (69), Expect = 1e-33
Identities = 79/81 (97%), Gaps = 1/81 (1%)
Strand = Plus / Plus
Query: 1 gtgcagtcacccataaagtagaaagcactactaa-cagcactggagggtgtagtgtttcc 59
|||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||
Sbjct: 5 gtgcagtcacccataaagtagaaagcactactaaacagcactgcagggtgtagtgtttcc 64
Query: 60 tactttatggatgagtgtact 80
|||||||||||||||||||||
Sbjct: 65 tactttatggatgagtgtact 85
>25963_gga-mir-142:mirbase
Length = 88
Score = 137 bits (69), Expect = 1e-33
Identities = 79/81 (97%), Gaps = 1/81 (1%)
Strand = Plus / Plus
Query: 1 gtgcagtcacccataaagtagaaagcactactaa-cagcactggagggtgtagtgtttcc 59
|||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||
Sbjct: 5 gtgcagtcacccataaagtagaaagcactactaaacagcactgcagggtgtagtgtttcc 64
Query: 60 tactttatggatgagtgtact 80
|||||||||||||||||||||
Sbjct: 65 tactttatggatgagtgtact 85
>31499_oan-mir-142:mirbase
Length = 110
Score = 135 bits (68), Expect = 5e-33
Identities = 77/80 (96%)
Strand = Plus / Plus
Query: 1 gtgcagtcacccataaagtagaaagcactactaacagcactggagggtgtagtgtttcct 60
||||||||| |||||||||||||||||||||||||||| ||| |||||||||||||||||
Sbjct: 18 gtgcagtcatccataaagtagaaagcactactaacagcgctgtagggtgtagtgtttcct 77
Query: 61 actttatggatgagtgtact 80
||||||||||||||||||||
Sbjct: 78 actttatggatgagtgtact 97
>27390_mdo-mir-142:mirbase
Length = 74
Score = 131 bits (66), Expect = 8e-32
Identities = 72/74 (97%)
Strand = Plus / Plus
Query: 3 gcagtcacccataaagtagaaagcactactaacagcactggagggtgtagtgtttcctac 62
||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||
Sbjct: 1 gcagtcacccataaagtagaaagcactactaacagcaatgtagggtgtagtgtttcctac 60
Query: 63 tttatggatgagtg 76
||||||||||||||
Sbjct: 61 tttatggatgagtg 74
>27041_eca-mir-142:mirbase
Length = 64
Score = 127 bits (64), Expect = 1e-30
Identities = 64/64 (100%)
Strand = Plus / Plus
Query: 9 acccataaagtagaaagcactactaacagcactggagggtgtagtgtttcctactttatg 68
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 acccataaagtagaaagcactactaacagcactggagggtgtagtgtttcctactttatg 60
Query: 69 gatg 72
||||
Sbjct: 61 gatg 64
>27042_eca-mir-142:mirbase
Length = 64
Score = 127 bits (64), Expect = 1e-30
Identities = 64/64 (100%)
Strand = Plus / Plus
Query: 9 acccataaagtagaaagcactactaacagcactggagggtgtagtgtttcctactttatg 68
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 acccataaagtagaaagcactactaacagcactggagggtgtagtgtttcctactttatg 60
Query: 69 gatg 72
||||
Sbjct: 61 gatg 64
>31874_mmu-mir-142:mirbase
Length = 64
Score = 127 bits (64), Expect = 1e-30
Identities = 64/64 (100%)
Strand = Plus / Plus
Query: 9 acccataaagtagaaagcactactaacagcactggagggtgtagtgtttcctactttatg 68
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 acccataaagtagaaagcactactaacagcactggagggtgtagtgtttcctactttatg 60
Query: 69 gatg 72
||||
Sbjct: 61 gatg 64
>31875_mmu-mir-142:mirbase
Length = 64
Score = 127 bits (64), Expect = 1e-30
Identities = 64/64 (100%)
Strand = Plus / Plus
Query: 9 acccataaagtagaaagcactactaacagcactggagggtgtagtgtttcctactttatg 68
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 acccataaagtagaaagcactactaacagcactggagggtgtagtgtttcctactttatg 60
Query: 69 gatg 72
||||
Sbjct: 61 gatg 64
>26716_cfa-mir-142:mirbase
Length = 63
Score = 125 bits (63), Expect = 5e-30
Identities = 63/63 (100%)
Strand = Plus / Plus
Query: 10 cccataaagtagaaagcactactaacagcactggagggtgtagtgtttcctactttatgg 69
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 cccataaagtagaaagcactactaacagcactggagggtgtagtgtttcctactttatgg 60
Query: 70 atg 72
|||
Sbjct: 61 atg 63
>26473_tgu-mir-142:mirbase
Length = 71
Score = 117 bits (59), Expect = 1e-27
Identities = 69/71 (97%), Gaps = 1/71 (1%)
Strand = Plus / Plus
Query: 2 tgcagtcacccataaagtagaaagcactactaa-cagcactggagggtgtagtgtttcct 60
||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||
Sbjct: 1 tgcagtcacccataaagtagaaagcactactaaacagcactgcagggtgtagtgtttcct 60
Query: 61 actttatggat 71
|||||||||||
Sbjct: 61 actttatggat 71
>25666_xla-mir-142:mirbase
Length = 86
Score = 105 bits (53), Expect = 5e-24
Identities = 75/81 (92%), Gaps = 1/81 (1%)
Strand = Plus / Plus
Query: 1 gtgcagtcacccataaagtagaaagcactacta-acagcactggagggtgtagtgtttcc 59
|||||| |||||||||||||||||||||||||| |||| |||| | | ||||||||||||
Sbjct: 3 gtgcagccacccataaagtagaaagcactactagacaggactgaacgctgtagtgtttcc 62
Query: 60 tactttatggatgagtgtact 80
|||||||||||||||||||||
Sbjct: 63 tactttatggatgagtgtact 83
>25788_xtr-mir-142-1:mirbase
Length = 86
Score = 105 bits (53), Expect = 5e-24
Identities = 75/81 (92%), Gaps = 1/81 (1%)
Strand = Plus / Plus
Query: 1 gtgcagtcacccataaagtagaaagcactacta-acagcactggagggtgtagtgtttcc 59
|||||| |||||||||||||||||||||||||| |||| |||| | | ||||||||||||
Sbjct: 3 gtgcagccacccataaagtagaaagcactactagacaggactgaacgctgtagtgtttcc 62
Query: 60 tactttatggatgagtgtact 80
|||||||||||||||||||||
Sbjct: 63 tactttatggatgagtgtact 83
>25789_xtr-mir-142-1:mirbase
Length = 86
Score = 105 bits (53), Expect = 5e-24
Identities = 75/81 (92%), Gaps = 1/81 (1%)
Strand = Plus / Plus
Query: 1 gtgcagtcacccataaagtagaaagcactacta-acagcactggagggtgtagtgtttcc 59
|||||| |||||||||||||||||||||||||| |||| |||| | | ||||||||||||
Sbjct: 3 gtgcagccacccataaagtagaaagcactactagacaggactgaacgctgtagtgtttcc 62
Query: 60 tactttatggatgagtgtact 80
|||||||||||||||||||||
Sbjct: 63 tactttatggatgagtgtact 83
>25790_xtr-mir-142-2:mirbase
Length = 86
Score = 105 bits (53), Expect = 5e-24
Identities = 75/81 (92%), Gaps = 1/81 (1%)
Strand = Plus / Plus
Query: 1 gtgcagtcacccataaagtagaaagcactacta-acagcactggagggtgtagtgtttcc 59
|||||| |||||||||||||||||||||||||| |||| |||| | | ||||||||||||
Sbjct: 3 gtgcagccacccataaagtagaaagcactactagacaggactgaacgctgtagtgtttcc 62
Query: 60 tactttatggatgagtgtact 80
|||||||||||||||||||||
Sbjct: 63 tactttatggatgagtgtact 83
>25791_xtr-mir-142-2:mirbase
Length = 86
Score = 105 bits (53), Expect = 5e-24
Identities = 75/81 (92%), Gaps = 1/81 (1%)
Strand = Plus / Plus
Query: 1 gtgcagtcacccataaagtagaaagcactacta-acagcactggagggtgtagtgtttcc 59
|||||| |||||||||||||||||||||||||| |||| |||| | | ||||||||||||
Sbjct: 3 gtgcagccacccataaagtagaaagcactactagacaggactgaacgctgtagtgtttcc 62
Query: 60 tactttatggatgagtgtact 80
|||||||||||||||||||||
Sbjct: 63 tactttatggatgagtgtact 83
>34311_dre-mir-142a:mirbase
Length = 91
Score = 77.8 bits (39), Expect = 1e-15
Identities = 73/82 (89%), Gaps = 3/82 (3%)
Strand = Plus / Plus
Query: 1 gtgcagtcacccataaagtagaaagcactactaacagcactgg--agggtgtagtgtttc 58
||||||||| |||||||||||||||||||||||| | | || | | ||||||||||||
Sbjct: 7 gtgcagtcatccataaagtagaaagcactactaa-acccctcgccacagtgtagtgtttc 65
Query: 59 ctactttatggatgagtgtact 80
||||||||||||||||||||||
Sbjct: 66 ctactttatggatgagtgtact 87
>34312_dre-mir-142a:mirbase
Length = 91
Score = 77.8 bits (39), Expect = 1e-15
Identities = 73/82 (89%), Gaps = 3/82 (3%)
Strand = Plus / Plus
Query: 1 gtgcagtcacccataaagtagaaagcactactaacagcactgg--agggtgtagtgtttc 58
||||||||| |||||||||||||||||||||||| | | || | | ||||||||||||
Sbjct: 7 gtgcagtcatccataaagtagaaagcactactaa-acccctcgccacagtgtagtgtttc 65
Query: 59 ctactttatggatgagtgtact 80
||||||||||||||||||||||
Sbjct: 66 ctactttatggatgagtgtact 87
>34313_dre-mir-142b:mirbase
Length = 86
Score = 73.8 bits (37), Expect = 2e-14
Identities = 71/81 (87%), Gaps = 1/81 (1%)
Strand = Plus / Plus
Query: 1 gtgcagtcacccataaagtagaaagcactactaa-cagcactggagggtgtagtgtttcc 59
|||||||||| ||||||||||| ||||||||||| | | || | |||||||||||||
Sbjct: 4 gtgcagtcactcataaagtagacagcactactaaacttctctacacagtgtagtgtttcc 63
Query: 60 tactttatggatgagtgtact 80
|||||||||||||||||||||
Sbjct: 64 tactttatggatgagtgtact 84
>34603_fru-mir-142a:mirbase
Length = 86
Score = 73.8 bits (37), Expect = 2e-14
Identities = 71/81 (87%), Gaps = 1/81 (1%)
Strand = Plus / Plus
Query: 1 gtgcagtcacccataaagtagaaagcactactaacagcactgg-agggtgtagtgtttcc 59
||||||||| |||||||||||||||||||||||| | || | |||||||||||||
Sbjct: 4 gtgcagtcatccataaagtagaaagcactactaaactctttgccacagtgtagtgtttcc 63
Query: 60 tactttatggatgagtgtact 80
|||||||||||||||||||||
Sbjct: 64 tactttatggatgagtgtact 84
>34750_tni-mir-142a:mirbase
Length = 90
Score = 67.9 bits (34), Expect = 1e-12
Identities = 34/34 (100%)
Strand = Plus / Plus
Query: 47 gtgtagtgtttcctactttatggatgagtgtact 80
||||||||||||||||||||||||||||||||||
Sbjct: 53 gtgtagtgtttcctactttatggatgagtgtact 86
>34604_fru-mir-142b:mirbase
Length = 86
Score = 65.9 bits (33), Expect = 4e-12
Identities = 67/77 (87%), Gaps = 1/77 (1%)
Strand = Plus / Plus
Query: 1 gtgcagtcacccataaagtagaaagcactact-aacagcactggagggtgtagtgtttcc 59
|||| ||||||||||||||||||||||||||| ||| || | |||||||||||||
Sbjct: 4 gtgctgtcacccataaagtagaaagcactactaaactattctacacagtgtagtgtttcc 63
Query: 60 tactttatggatgagtg 76
|||||||||||||||||
Sbjct: 64 tactttatggatgagtg 80
>34751_tni-mir-142b:mirbase
Length = 86
Score = 65.9 bits (33), Expect = 4e-12
Identities = 67/77 (87%), Gaps = 1/77 (1%)
Strand = Plus / Plus
Query: 1 gtgcagtcacccataaagtagaaagcactact-aacagcactggagggtgtagtgtttcc 59
|||| ||||||||||||||||||||||||||| ||| | | | |||||||||||||
Sbjct: 4 gtgctgtcacccataaagtagaaagcactactaaacgtctttacacagtgtagtgtttcc 63
Query: 60 tactttatggatgagtg 76
|||||||||||||||||
Sbjct: 64 tactttatggatgagtg 80
