miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>33994_ssc-mir-143:mirbase
Length = 80
Score = 159 bits (80), Expect = 4e-40
Identities = 80/80 (100%)
Strand = Plus / Plus
Query: 1 gtcccccagccggaggtgcagtgctgcatctctggtcagctgggagtctgagatgaagca 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 gtcccccagccggaggtgcagtgctgcatctctggtcagctgggagtctgagatgaagca 60
Query: 61 ctgtagctcgggaagggaga 80
||||||||||||||||||||
Sbjct: 61 ctgtagctcgggaagggaga 80
>33229_bta-mir-143:mirbase
Length = 101
Score = 135 bits (68), Expect = 5e-33
Identities = 74/76 (97%)
Strand = Plus / Plus
Query: 5 cccagccggaggtgcagtgctgcatctctggtcagctgggagtctgagatgaagcactgt 64
||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 12 cccagcctgaggtgcagtgctgcatctctggtcagttgggagtctgagatgaagcactgt 71
Query: 65 agctcgggaagggaga 80
||||||||||||||||
Sbjct: 72 agctcgggaagggaga 87
>32749_rno-mir-143:mirbase
Length = 105
Score = 127 bits (64), Expect = 1e-30
Identities = 73/76 (96%)
Strand = Plus / Plus
Query: 5 cccagccggaggtgcagtgctgcatctctggtcagctgggagtctgagatgaagcactgt 64
||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 16 cccagcctgaggtgcagtgctgcatctctggtcagttgggagtctgagatgaagcactgt 75
Query: 65 agctcgggaagggaga 80
||||| ||||||||||
Sbjct: 76 agctcaggaagggaga 91
>27577_lla-mir-143:mirbase
Length = 106
Score = 119 bits (60), Expect = 3e-28
Identities = 72/76 (94%)
Strand = Plus / Plus
Query: 5 cccagccggaggtgcagtgctgcatctctggtcagctgggagtctgagatgaagcactgt 64
||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 17 cccagcctgaggtgcagtgctgcatctctggtcagttgggagtctgagatgaagcactgt 76
Query: 65 agctcgggaagggaga 80
||||| ||||| ||||
Sbjct: 77 agctcaggaagagaga 92
>27748_mml-mir-143:mirbase
Length = 106
Score = 119 bits (60), Expect = 3e-28
Identities = 72/76 (94%)
Strand = Plus / Plus
Query: 5 cccagccggaggtgcagtgctgcatctctggtcagctgggagtctgagatgaagcactgt 64
||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 17 cccagcctgaggtgcagtgctgcatctctggtcagttgggagtctgagatgaagcactgt 76
Query: 65 agctcgggaagggaga 80
||||| ||||| ||||
Sbjct: 77 agctcaggaagagaga 92
>28309_ggo-mir-143:mirbase
Length = 106
Score = 119 bits (60), Expect = 3e-28
Identities = 72/76 (94%)
Strand = Plus / Plus
Query: 5 cccagccggaggtgcagtgctgcatctctggtcagctgggagtctgagatgaagcactgt 64
||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 17 cccagcctgaggtgcagtgctgcatctctggtcagttgggagtctgagatgaagcactgt 76
Query: 65 agctcgggaagggaga 80
||||| ||||| ||||
Sbjct: 77 agctcaggaagagaga 92
>28463_hsa-mir-143:mirbase
Length = 106
Score = 119 bits (60), Expect = 3e-28
Identities = 72/76 (94%)
Strand = Plus / Plus
Query: 5 cccagccggaggtgcagtgctgcatctctggtcagctgggagtctgagatgaagcactgt 64
||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 17 cccagcctgaggtgcagtgctgcatctctggtcagttgggagtctgagatgaagcactgt 76
Query: 65 agctcgggaagggaga 80
||||| ||||| ||||
Sbjct: 77 agctcaggaagagaga 92
>30098_ppa-mir-143:mirbase
Length = 106
Score = 119 bits (60), Expect = 3e-28
Identities = 72/76 (94%)
Strand = Plus / Plus
Query: 5 cccagccggaggtgcagtgctgcatctctggtcagctgggagtctgagatgaagcactgt 64
||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 17 cccagcctgaggtgcagtgctgcatctctggtcagttgggagtctgagatgaagcactgt 76
Query: 65 agctcgggaagggaga 80
||||| ||||| ||||
Sbjct: 77 agctcaggaagagaga 92
>30235_ptr-mir-143:mirbase
Length = 106
Score = 119 bits (60), Expect = 3e-28
Identities = 72/76 (94%)
Strand = Plus / Plus
Query: 5 cccagccggaggtgcagtgctgcatctctggtcagctgggagtctgagatgaagcactgt 64
||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 17 cccagcctgaggtgcagtgctgcatctctggtcagttgggagtctgagatgaagcactgt 76
Query: 65 agctcgggaagggaga 80
||||| ||||| ||||
Sbjct: 77 agctcaggaagagaga 92
>30847_ppy-mir-143:mirbase
Length = 106
Score = 119 bits (60), Expect = 3e-28
Identities = 72/76 (94%)
Strand = Plus / Plus
Query: 5 cccagccggaggtgcagtgctgcatctctggtcagctgggagtctgagatgaagcactgt 64
||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 17 cccagcctgaggtgcagtgctgcatctctggtcagttgggagtctgagatgaagcactgt 76
Query: 65 agctcgggaagggaga 80
||||| ||||| ||||
Sbjct: 77 agctcaggaagagaga 92
>31500_oan-mir-143:mirbase
Length = 90
Score = 117 bits (59), Expect = 1e-27
Identities = 71/75 (94%)
Strand = Plus / Plus
Query: 5 cccagccggaggtgcagtgctgcatctctggtcagctgggagtctgagatgaagcactgt 64
||||||| |||||||||||||||||||||||||| || |||||||||||||||||||||
Sbjct: 8 cccagcccaaggtgcagtgctgcatctctggtcagttgtgagtctgagatgaagcactgt 67
Query: 65 agctcgggaagggag 79
|||||||||||||||
Sbjct: 68 agctcgggaagggag 82
>25792_xtr-mir-143:mirbase
Length = 83
Score = 113 bits (57), Expect = 2e-26
Identities = 69/73 (94%)
Strand = Plus / Plus
Query: 5 cccagccggaggtgcagtgctgcatctctggtcagctgggagtctgagatgaagcactgt 64
||||||| |||||||||||||||||||||||||| || |||||||||||||||||||||
Sbjct: 6 cccagcccaaggtgcagtgctgcatctctggtcagttgtgagtctgagatgaagcactgt 65
Query: 65 agctcgggaaggg 77
|||||||||||||
Sbjct: 66 agctcgggaaggg 78
>34314_dre-mir-143-1:mirbase
Length = 99
Score = 109 bits (55), Expect = 3e-25
Identities = 58/59 (98%)
Strand = Plus / Plus
Query: 15 ggtgcagtgctgcatctctggtcagctgggagtctgagatgaagcactgtagctcggga 73
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 23 ggtgcagtgctgcatctctggtcaactgggagtctgagatgaagcactgtagctcggga 81
>34315_dre-mir-143-2:mirbase
Length = 99
Score = 109 bits (55), Expect = 3e-25
Identities = 58/59 (98%)
Strand = Plus / Plus
Query: 15 ggtgcagtgctgcatctctggtcagctgggagtctgagatgaagcactgtagctcggga 73
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 23 ggtgcagtgctgcatctctggtcaactgggagtctgagatgaagcactgtagctcggga 81
>27043_eca-mir-143:mirbase
Length = 64
Score = 105 bits (53), Expect = 5e-24
Identities = 56/57 (98%)
Strand = Plus / Plus
Query: 13 gaggtgcagtgctgcatctctggtcagctgggagtctgagatgaagcactgtagctc 69
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 5 gaggtgcagtgctgcatctctggtcagttgggagtctgagatgaagcactgtagctc 61
>31876_mmu-mir-143:mirbase
Length = 63
Score = 105 bits (53), Expect = 5e-24
Identities = 56/57 (98%)
Strand = Plus / Plus
Query: 13 gaggtgcagtgctgcatctctggtcagctgggagtctgagatgaagcactgtagctc 69
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 4 gaggtgcagtgctgcatctctggtcagttgggagtctgagatgaagcactgtagctc 60
>27391_mdo-mir-143:mirbase
Length = 63
Score = 103 bits (52), Expect = 2e-23
Identities = 58/60 (96%)
Strand = Plus / Plus
Query: 13 gaggtgcagtgctgcatctctggtcagctgggagtctgagatgaagcactgtagctcggg 72
||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||
Sbjct: 4 gaggtgcagtgctgcatctctggtcagttgtgagtctgagatgaagcactgtagctcggg 63
>26717_cfa-mir-143:mirbase
Length = 55
Score = 101 bits (51), Expect = 7e-23
Identities = 54/55 (98%)
Strand = Plus / Plus
Query: 15 ggtgcagtgctgcatctctggtcagctgggagtctgagatgaagcactgtagctc 69
||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 1 ggtgcagtgctgcatctctggtcagttgggagtctgagatgaagcactgtagctc 55
>25494_pma-mir-143:mirbase
Length = 70
Score = 44.1 bits (22), Expect = 1e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 44 gagtctgagatgaagcactgta 65
||||||||||||||||||||||
Sbjct: 39 gagtctgagatgaagcactgta 60
