miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>33233_bta-mir-146b:mirbase
Length = 106
Score = 178 bits (90), Expect = 5e-46
Identities = 93/94 (98%)
Strand = Plus / Plus
Query: 1 gaactttggccacctggctctgagaactgaattccataggctgtgagctctagcaaatgc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6 gaactttggccacctggctctgagaactgaattccataggctgtgagctctagcaaatgc 65
Query: 61 cctaggaactcagttctggtgcccggctgtgcta 94
|||||| |||||||||||||||||||||||||||
Sbjct: 66 cctagggactcagttctggtgcccggctgtgcta 99
>31880_mmu-mir-146b:mirbase
Length = 109
Score = 167 bits (84), Expect = 2e-42
Identities = 93/96 (96%)
Strand = Plus / Plus
Query: 1 gaactttggccacctggctctgagaactgaattccataggctgtgagctctagcaaatgc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||
Sbjct: 9 gaactttggccacctggctctgagaactgaattccataggctgtgagctctagcagacgc 68
Query: 61 cctaggaactcagttctggtgcccggctgtgctata 96
|||||| |||||||||||||||||||||||||||||
Sbjct: 69 cctagggactcagttctggtgcccggctgtgctata 104
>32753_rno-mir-146b:mirbase
Length = 88
Score = 135 bits (68), Expect = 7e-33
Identities = 83/88 (94%)
Strand = Plus / Plus
Query: 7 tggccacctggctctgagaactgaattccataggctgtgagctctagcaaatgccctagg 66
|||||||||||| ||||||||||||||||||||||||||| |||||||| ||||||||||
Sbjct: 1 tggccacctggccctgagaactgaattccataggctgtgaactctagcagatgccctagg 60
Query: 67 aactcagttctggtgcccggctgtgcta 94
|||||||||||||||| ||||||||||
Sbjct: 61 gactcagttctggtgcctggctgtgcta 88
>27048_eca-mir-146b:mirbase
Length = 74
Score = 131 bits (66), Expect = 1e-31
Identities = 72/74 (97%)
Strand = Plus / Plus
Query: 13 cctggctctgagaactgaattccataggctgtgagctctagcaaatgccctaggaactca 72
|||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||
Sbjct: 1 cctggctctgagaactgaattccataggctgtgagctccagcaaatgccctagggactca 60
Query: 73 gttctggtgcccgg 86
||||||||||||||
Sbjct: 61 gttctggtgcccgg 74
>27047_eca-mir-146b:mirbase
Length = 74
Score = 131 bits (66), Expect = 1e-31
Identities = 72/74 (97%)
Strand = Plus / Plus
Query: 13 cctggctctgagaactgaattccataggctgtgagctctagcaaatgccctaggaactca 72
|||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||
Sbjct: 1 cctggctctgagaactgaattccataggctgtgagctccagcaaatgccctagggactca 60
Query: 73 gttctggtgcccgg 86
||||||||||||||
Sbjct: 61 gttctggtgcccgg 74
>30851_ppy-mir-146b:mirbase
Length = 74
Score = 115 bits (58), Expect = 6e-27
Identities = 70/74 (94%)
Strand = Plus / Plus
Query: 13 cctggctctgagaactgaattccataggctgtgagctctagcaaatgccctaggaactca 72
|||||| |||||||||||||||||||||||||||||||||||||||||||| | |||||
Sbjct: 1 cctggcactgagaactgaattccataggctgtgagctctagcaaatgccctgtggactca 60
Query: 73 gttctggtgcccgg 86
||||||||||||||
Sbjct: 61 gttctggtgcccgg 74
>30852_ppy-mir-146b:mirbase
Length = 74
Score = 115 bits (58), Expect = 6e-27
Identities = 70/74 (94%)
Strand = Plus / Plus
Query: 13 cctggctctgagaactgaattccataggctgtgagctctagcaaatgccctaggaactca 72
|||||| |||||||||||||||||||||||||||||||||||||||||||| | |||||
Sbjct: 1 cctggcactgagaactgaattccataggctgtgagctctagcaaatgccctgtggactca 60
Query: 73 gttctggtgcccgg 86
||||||||||||||
Sbjct: 61 gttctggtgcccgg 74
>27395_mdo-mir-146b:mirbase
Length = 68
Score = 107 bits (54), Expect = 1e-24
Identities = 63/66 (95%)
Strand = Plus / Plus
Query: 14 ctggctctgagaactgaattccataggctgtgagctctagcaaatgccctaggaactcag 73
||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||
Sbjct: 1 ctggctctgagaactgaattccataggctgtgagctcatgcaaatgccctaggaagtcag 60
Query: 74 ttctgg 79
||||||
Sbjct: 61 ttctgg 66
>27752_mml-mir-146b:mirbase
Length = 73
Score = 99.6 bits (50), Expect = 4e-22
Identities = 69/74 (93%), Gaps = 1/74 (1%)
Strand = Plus / Plus
Query: 13 cctggctctgagaactgaattccataggctgtgagctctagcaaatgccctaggaactca 72
|||||| ||||||||||||||||||||||||||||||||||| |||||||| | |||||
Sbjct: 1 cctggcactgagaactgaattccataggctgtgagctctagc-aatgccctgtggactca 59
Query: 73 gttctggtgcccgg 86
||||||||||||||
Sbjct: 60 gttctggtgcccgg 73
>27753_mml-mir-146b:mirbase
Length = 73
Score = 99.6 bits (50), Expect = 4e-22
Identities = 69/74 (93%), Gaps = 1/74 (1%)
Strand = Plus / Plus
Query: 13 cctggctctgagaactgaattccataggctgtgagctctagcaaatgccctaggaactca 72
|||||| ||||||||||||||||||||||||||||||||||| |||||||| | |||||
Sbjct: 1 cctggcactgagaactgaattccataggctgtgagctctagc-aatgccctgtggactca 59
Query: 73 gttctggtgcccgg 86
||||||||||||||
Sbjct: 60 gttctggtgcccgg 73
>28467_hsa-mir-146b:mirbase
Length = 73
Score = 99.6 bits (50), Expect = 4e-22
Identities = 69/74 (93%), Gaps = 1/74 (1%)
Strand = Plus / Plus
Query: 13 cctggctctgagaactgaattccataggctgtgagctctagcaaatgccctaggaactca 72
|||||| ||||||||||||||||||||||||||||||||||| |||||||| | |||||
Sbjct: 1 cctggcactgagaactgaattccataggctgtgagctctagc-aatgccctgtggactca 59
Query: 73 gttctggtgcccgg 86
||||||||||||||
Sbjct: 60 gttctggtgcccgg 73
>28468_hsa-mir-146b:mirbase
Length = 73
Score = 99.6 bits (50), Expect = 4e-22
Identities = 69/74 (93%), Gaps = 1/74 (1%)
Strand = Plus / Plus
Query: 13 cctggctctgagaactgaattccataggctgtgagctctagcaaatgccctaggaactca 72
|||||| ||||||||||||||||||||||||||||||||||| |||||||| | |||||
Sbjct: 1 cctggcactgagaactgaattccataggctgtgagctctagc-aatgccctgtggactca 59
Query: 73 gttctggtgcccgg 86
||||||||||||||
Sbjct: 60 gttctggtgcccgg 73
>30239_ptr-mir-146b:mirbase
Length = 72
Score = 97.6 bits (49), Expect = 1e-21
Identities = 68/73 (93%), Gaps = 1/73 (1%)
Strand = Plus / Plus
Query: 14 ctggctctgagaactgaattccataggctgtgagctctagcaaatgccctaggaactcag 73
||||| ||||||||||||||||||||||||||||||||||| |||||||| | ||||||
Sbjct: 1 ctggcactgagaactgaattccataggctgtgagctctagc-aatgccctgtggactcag 59
Query: 74 ttctggtgcccgg 86
|||||||||||||
Sbjct: 60 ttctggtgcccgg 72
>26721_cfa-mir-146b:mirbase
Length = 61
Score = 73.8 bits (37), Expect = 2e-14
Identities = 55/61 (90%)
Strand = Plus / Plus
Query: 21 tgagaactgaattccataggctgtgagctctagcaaatgccctaggaactcagttctggt 80
||||||||||||||||||||||||||||| |||||| |||||| |||||||||||||
Sbjct: 1 tgagaactgaattccataggctgtgagcttgagcaaacagcctagggactcagttctggt 60
Query: 81 g 81
|
Sbjct: 61 g 61
>31504_oan-mir-146b:mirbase
Length = 109
Score = 65.9 bits (33), Expect = 5e-12
Identities = 33/33 (100%)
Strand = Plus / Plus
Query: 15 tggctctgagaactgaattccataggctgtgag 47
|||||||||||||||||||||||||||||||||
Sbjct: 19 tggctctgagaactgaattccataggctgtgag 51
>26476_tgu-mir-146b:mirbase
Length = 72
Score = 54.0 bits (27), Expect = 2e-08
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 15 tggctctgagaactgaattccataggc 41
|||||||||||||||||||||||||||
Sbjct: 5 tggctctgagaactgaattccataggc 31
>25497_pma-mir-146:mirbase
Length = 75
Score = 52.0 bits (26), Expect = 8e-08
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 21 tgagaactgaattccataggctgtga 46
||||||||||||||||||||||||||
Sbjct: 9 tgagaactgaattccataggctgtga 34
>25966_gga-mir-146b:mirbase
Length = 105
Score = 46.1 bits (23), Expect = 5e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 15 tggctctgagaactgaattccataggc 41
||||| |||||||||||||||||||||
Sbjct: 13 tggctttgagaactgaattccataggc 39
>25796_xtr-mir-146b:mirbase
Length = 100
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 16 ggctctgagaactgaattccat 37
||||||||||||||||||||||
Sbjct: 16 ggctctgagaactgaattccat 37
>25967_gga-mir-146c-1:mirbase
Length = 129
Score = 42.1 bits (21), Expect = 7e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 17 gctctgagaactgaattccat 37
|||||||||||||||||||||
Sbjct: 30 gctctgagaactgaattccat 50
>25968_gga-mir-146c-2:mirbase
Length = 129
Score = 42.1 bits (21), Expect = 7e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 17 gctctgagaactgaattccat 37
|||||||||||||||||||||
Sbjct: 30 gctctgagaactgaattccat 50
>26475_tgu-mir-146a:mirbase
Length = 116
Score = 42.1 bits (21), Expect = 7e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 17 gctctgagaactgaattccat 37
|||||||||||||||||||||
Sbjct: 25 gctctgagaactgaattccat 45
>31879_mmu-mir-146a:mirbase
Length = 65
Score = 42.1 bits (21), Expect = 7e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 17 gctctgagaactgaattccat 37
|||||||||||||||||||||
Sbjct: 2 gctctgagaactgaattccat 22
>32752_rno-mir-146a:mirbase
Length = 95
Score = 42.1 bits (21), Expect = 7e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 17 gctctgagaactgaattccat 37
|||||||||||||||||||||
Sbjct: 13 gctctgagaactgaattccat 33
>33232_bta-mir-146a:mirbase
Length = 99
Score = 42.1 bits (21), Expect = 7e-05
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 21 tgagaactgaattccataggctgtg 45
|||||||||||||||||||| ||||
Sbjct: 21 tgagaactgaattccataggttgtg 45
>25795_xtr-mir-146:mirbase
Length = 90
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 21 tgagaactgaattccatagg 40
||||||||||||||||||||
Sbjct: 18 tgagaactgaattccatagg 37
>34318_dre-mir-146a:mirbase
Length = 114
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 20 ctgagaactgaattccatag 39
||||||||||||||||||||
Sbjct: 24 ctgagaactgaattccatag 43
