miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>34002_ssc-mir-151:mirbase
Length = 80
Score = 159 bits (80), Expect = 4e-40
Identities = 80/80 (100%)
Strand = Plus / Plus
Query: 1 ttttcctgccctcgaggagctcacagtctagtacgtctcatcccctactagactgaagct 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 ttttcctgccctcgaggagctcacagtctagtacgtctcatcccctactagactgaagct 60
Query: 61 ccttgaggacagggatcgtc 80
||||||||||||||||||||
Sbjct: 61 ccttgaggacagggatcgtc 80
>27760_mml-mir-151:mirbase
Length = 90
Score = 141 bits (71), Expect = 8e-35
Identities = 74/75 (98%)
Strand = Plus / Plus
Query: 2 tttcctgccctcgaggagctcacagtctagtacgtctcatcccctactagactgaagctc 61
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 1 tttcctgccctcgaggagctcacagtctagtatgtctcatcccctactagactgaagctc 60
Query: 62 cttgaggacagggat 76
|||||||||||||||
Sbjct: 61 cttgaggacagggat 75
>27761_mml-mir-151:mirbase
Length = 90
Score = 141 bits (71), Expect = 8e-35
Identities = 74/75 (98%)
Strand = Plus / Plus
Query: 2 tttcctgccctcgaggagctcacagtctagtacgtctcatcccctactagactgaagctc 61
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 1 tttcctgccctcgaggagctcacagtctagtatgtctcatcccctactagactgaagctc 60
Query: 62 cttgaggacagggat 76
|||||||||||||||
Sbjct: 61 cttgaggacagggat 75
>28475_hsa-mir-151:mirbase
Length = 90
Score = 141 bits (71), Expect = 8e-35
Identities = 74/75 (98%)
Strand = Plus / Plus
Query: 2 tttcctgccctcgaggagctcacagtctagtacgtctcatcccctactagactgaagctc 61
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 1 tttcctgccctcgaggagctcacagtctagtatgtctcatcccctactagactgaagctc 60
Query: 62 cttgaggacagggat 76
|||||||||||||||
Sbjct: 61 cttgaggacagggat 75
>28476_hsa-mir-151:mirbase
Length = 90
Score = 141 bits (71), Expect = 8e-35
Identities = 74/75 (98%)
Strand = Plus / Plus
Query: 2 tttcctgccctcgaggagctcacagtctagtacgtctcatcccctactagactgaagctc 61
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 1 tttcctgccctcgaggagctcacagtctagtatgtctcatcccctactagactgaagctc 60
Query: 62 cttgaggacagggat 76
|||||||||||||||
Sbjct: 61 cttgaggacagggat 75
>30246_ptr-mir-151:mirbase
Length = 89
Score = 141 bits (71), Expect = 8e-35
Identities = 74/75 (98%)
Strand = Plus / Plus
Query: 2 tttcctgccctcgaggagctcacagtctagtacgtctcatcccctactagactgaagctc 61
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 1 tttcctgccctcgaggagctcacagtctagtatgtctcatcccctactagactgaagctc 60
Query: 62 cttgaggacagggat 76
|||||||||||||||
Sbjct: 61 cttgaggacagggat 75
>30859_ppy-mir-151:mirbase
Length = 89
Score = 141 bits (71), Expect = 8e-35
Identities = 74/75 (98%)
Strand = Plus / Plus
Query: 2 tttcctgccctcgaggagctcacagtctagtacgtctcatcccctactagactgaagctc 61
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 1 tttcctgccctcgaggagctcacagtctagtatgtctcatcccctactagactgaagctc 60
Query: 62 cttgaggacagggat 76
|||||||||||||||
Sbjct: 61 cttgaggacagggat 75
>30860_ppy-mir-151:mirbase
Length = 89
Score = 141 bits (71), Expect = 8e-35
Identities = 74/75 (98%)
Strand = Plus / Plus
Query: 2 tttcctgccctcgaggagctcacagtctagtacgtctcatcccctactagactgaagctc 61
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 1 tttcctgccctcgaggagctcacagtctagtatgtctcatcccctactagactgaagctc 60
Query: 62 cttgaggacagggat 76
|||||||||||||||
Sbjct: 61 cttgaggacagggat 75
>33238_bta-mir-151:mirbase
Length = 69
Score = 137 bits (69), Expect = 1e-33
Identities = 69/69 (100%)
Strand = Plus / Plus
Query: 5 cctgccctcgaggagctcacagtctagtacgtctcatcccctactagactgaagctcctt 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 cctgccctcgaggagctcacagtctagtacgtctcatcccctactagactgaagctcctt 60
Query: 65 gaggacagg 73
|||||||||
Sbjct: 61 gaggacagg 69
>27055_eca-mir-151:mirbase
Length = 69
Score = 129 bits (65), Expect = 3e-31
Identities = 68/69 (98%)
Strand = Plus / Plus
Query: 5 cctgccctcgaggagctcacagtctagtacgtctcatcccctactagactgaagctcctt 64
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 1 cctgccctcgaggagctcacagtctagtatgtctcatcccctactagactgaagctcctt 60
Query: 65 gaggacagg 73
|||||||||
Sbjct: 61 gaggacagg 69
>32758_rno-mir-151:mirbase
Length = 97
Score = 117 bits (59), Expect = 1e-27
Identities = 75/79 (94%), Gaps = 1/79 (1%)
Strand = Plus / Plus
Query: 2 tttcctgccctcgaggagctcacagtctagtacgtctcatcccctactagactgaagctc 61
|||||||||||||||||||||||||||||||| ||||| | |||||||||||||| ||||
Sbjct: 6 tttcctgccctcgaggagctcacagtctagtatgtctcct-ccctactagactgaggctc 64
Query: 62 cttgaggacagggatcgtc 80
|||||||||||||||||||
Sbjct: 65 cttgaggacagggatcgtc 83
>33084_rno-mir-3586:mirbase
Length = 120
Score = 117 bits (59), Expect = 1e-27
Identities = 75/79 (94%), Gaps = 1/79 (1%)
Strand = Plus / Minus
Query: 2 tttcctgccctcgaggagctcacagtctagtacgtctcatcccctactagactgaagctc 61
|||||||||||||||||||||||||||||||| ||||| | |||||||||||||| ||||
Sbjct: 92 tttcctgccctcgaggagctcacagtctagtatgtctcct-ccctactagactgaggctc 34
Query: 62 cttgaggacagggatcgtc 80
|||||||||||||||||||
Sbjct: 33 cttgaggacagggatcgtc 15
>33085_rno-mir-3586:mirbase
Length = 120
Score = 117 bits (59), Expect = 1e-27
Identities = 75/79 (94%), Gaps = 1/79 (1%)
Strand = Plus / Minus
Query: 2 tttcctgccctcgaggagctcacagtctagtacgtctcatcccctactagactgaagctc 61
|||||||||||||||||||||||||||||||| ||||| | |||||||||||||| ||||
Sbjct: 92 tttcctgccctcgaggagctcacagtctagtatgtctcct-ccctactagactgaggctc 34
Query: 62 cttgaggacagggatcgtc 80
|||||||||||||||||||
Sbjct: 33 cttgaggacagggatcgtc 15
>31886_mmu-mir-151:mirbase
Length = 68
Score = 97.6 bits (49), Expect = 1e-21
Identities = 65/69 (94%), Gaps = 1/69 (1%)
Strand = Plus / Plus
Query: 5 cctgccctcgaggagctcacagtctagtacgtctcatcccctactagactgaagctcctt 64
||||||||||||||||||||||||||||| ||||| | |||||||||||||| |||||||
Sbjct: 1 cctgccctcgaggagctcacagtctagtatgtctcct-ccctactagactgaggctcctt 59
Query: 65 gaggacagg 73
|||||||||
Sbjct: 60 gaggacagg 68
>31887_mmu-mir-151:mirbase
Length = 68
Score = 97.6 bits (49), Expect = 1e-21
Identities = 65/69 (94%), Gaps = 1/69 (1%)
Strand = Plus / Plus
Query: 5 cctgccctcgaggagctcacagtctagtacgtctcatcccctactagactgaagctcctt 64
||||||||||||||||||||||||||||| ||||| | |||||||||||||| |||||||
Sbjct: 1 cctgccctcgaggagctcacagtctagtatgtctcct-ccctactagactgaggctcctt 59
Query: 65 gaggacagg 73
|||||||||
Sbjct: 60 gaggacagg 68
>26727_cfa-mir-151:mirbase
Length = 56
Score = 73.8 bits (37), Expect = 2e-14
Identities = 53/57 (92%), Gaps = 1/57 (1%)
Strand = Plus / Plus
Query: 12 tcgaggagctcacagtctagtacgtctcatcccctactagactgaagctccttgagg 68
|||||||||||||||||||||| |||||| |||||||||||||| |||||||||||
Sbjct: 1 tcgaggagctcacagtctagtatgtctca-gccctactagactgaggctccttgagg 56
>28477_hsa-mir-151b:mirbase
Length = 96
Score = 54.0 bits (27), Expect = 2e-08
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 5 cctgccctcgaggagctcacagtctag 31
|||||||||||||||||||||||||||
Sbjct: 53 cctgccctcgaggagctcacagtctag 79
>27399_mdo-mir-151:mirbase
Length = 72
Score = 48.1 bits (24), Expect = 9e-07
Identities = 27/28 (96%)
Strand = Plus / Minus
Query: 3 ttcctgccctcgaggagctcacagtcta 30
||||||||||| ||||||||||||||||
Sbjct: 44 ttcctgccctcaaggagctcacagtcta 17
>26968_eca-mir-28:mirbase
Length = 86
Score = 40.1 bits (20), Expect = 2e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 7 tgccctcgaggagctcacagtcta 30
||||||| ||||||||||||||||
Sbjct: 7 tgccctcaaggagctcacagtcta 30
Score = 40.1 bits (20), Expect = 2e-04
Identities = 26/28 (92%)
Strand = Plus / Minus
Query: 5 cctgccctcgaggagctcacagtctagt 32
||||||||| ||||||||||| ||||||
Sbjct: 82 cctgccctccaggagctcacaatctagt 55
>26969_eca-mir-28:mirbase
Length = 86
Score = 40.1 bits (20), Expect = 2e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 7 tgccctcgaggagctcacagtcta 30
||||||| ||||||||||||||||
Sbjct: 7 tgccctcaaggagctcacagtcta 30
Score = 40.1 bits (20), Expect = 2e-04
Identities = 26/28 (92%)
Strand = Plus / Minus
Query: 5 cctgccctcgaggagctcacagtctagt 32
||||||||| ||||||||||| ||||||
Sbjct: 82 cctgccctccaggagctcacaatctagt 55
>27259_eca-mir-708:mirbase
Length = 93
Score = 40.1 bits (20), Expect = 2e-04
Identities = 26/28 (92%)
Strand = Plus / Minus
Query: 5 cctgccctcgaggagctcacagtctagt 32
||||||||| || |||||||||||||||
Sbjct: 89 cctgccctctagaagctcacagtctagt 62
>27492_age-mir-28:mirbase
Length = 86
Score = 40.1 bits (20), Expect = 2e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 7 tgccctcgaggagctcacagtcta 30
||||||| ||||||||||||||||
Sbjct: 7 tgccctcaaggagctcacagtcta 30
Score = 40.1 bits (20), Expect = 2e-04
Identities = 26/28 (92%)
Strand = Plus / Minus
Query: 5 cctgccctcgaggagctcacagtctagt 32
||||||||| ||||||||||| ||||||
Sbjct: 82 cctgccctccaggagctcacaatctagt 55
>27552_lla-mir-28:mirbase
Length = 86
Score = 40.1 bits (20), Expect = 2e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 7 tgccctcgaggagctcacagtcta 30
||||||| ||||||||||||||||
Sbjct: 7 tgccctcaaggagctcacagtcta 30
Score = 40.1 bits (20), Expect = 2e-04
Identities = 26/28 (92%)
Strand = Plus / Minus
Query: 5 cctgccctcgaggagctcacagtctagt 32
||||||||| ||||||||||| ||||||
Sbjct: 82 cctgccctccaggagctcacaatctagt 55
>27600_sla-mir-28:mirbase
Length = 86
Score = 40.1 bits (20), Expect = 2e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 7 tgccctcgaggagctcacagtcta 30
||||||| ||||||||||||||||
Sbjct: 7 tgccctcaaggagctcacagtcta 30
>27675_mml-mir-28:mirbase
Length = 86
Score = 40.1 bits (20), Expect = 2e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 7 tgccctcgaggagctcacagtcta 30
||||||| ||||||||||||||||
Sbjct: 7 tgccctcaaggagctcacagtcta 30
Score = 40.1 bits (20), Expect = 2e-04
Identities = 26/28 (92%)
Strand = Plus / Minus
Query: 5 cctgccctcgaggagctcacagtctagt 32
||||||||| ||||||||||| ||||||
Sbjct: 82 cctgccctccaggagctcacaatctagt 55
>28111_mml-mir-708:mirbase
Length = 88
Score = 40.1 bits (20), Expect = 2e-04
Identities = 26/28 (92%)
Strand = Plus / Minus
Query: 5 cctgccctcgaggagctcacagtctagt 32
||||||||| || |||||||||||||||
Sbjct: 86 cctgccctctagaagctcacagtctagt 59
>28188_mne-mir-28:mirbase
Length = 86
Score = 40.1 bits (20), Expect = 2e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 7 tgccctcgaggagctcacagtcta 30
||||||| ||||||||||||||||
Sbjct: 7 tgccctcaaggagctcacagtcta 30
Score = 40.1 bits (20), Expect = 2e-04
Identities = 26/28 (92%)
Strand = Plus / Minus
Query: 5 cctgccctcgaggagctcacagtctagt 32
||||||||| ||||||||||| ||||||
Sbjct: 82 cctgccctccaggagctcacaatctagt 55
>28274_ggo-mir-28:mirbase
Length = 86
Score = 40.1 bits (20), Expect = 2e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 7 tgccctcgaggagctcacagtcta 30
||||||| ||||||||||||||||
Sbjct: 7 tgccctcaaggagctcacagtcta 30
Score = 40.1 bits (20), Expect = 2e-04
Identities = 26/28 (92%)
Strand = Plus / Minus
Query: 5 cctgccctcgaggagctcacagtctagt 32
||||||||| ||||||||||| ||||||
Sbjct: 82 cctgccctccaggagctcacaatctagt 55
>28385_hsa-mir-28:mirbase
Length = 86
Score = 40.1 bits (20), Expect = 2e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 7 tgccctcgaggagctcacagtcta 30
||||||| ||||||||||||||||
Sbjct: 7 tgccctcaaggagctcacagtcta 30
Score = 40.1 bits (20), Expect = 2e-04
Identities = 26/28 (92%)
Strand = Plus / Minus
Query: 5 cctgccctcgaggagctcacagtctagt 32
||||||||| ||||||||||| ||||||
Sbjct: 82 cctgccctccaggagctcacaatctagt 55
>28386_hsa-mir-28:mirbase
Length = 86
Score = 40.1 bits (20), Expect = 2e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 7 tgccctcgaggagctcacagtcta 30
||||||| ||||||||||||||||
Sbjct: 7 tgccctcaaggagctcacagtcta 30
Score = 40.1 bits (20), Expect = 2e-04
Identities = 26/28 (92%)
Strand = Plus / Minus
Query: 5 cctgccctcgaggagctcacagtctagt 32
||||||||| ||||||||||| ||||||
Sbjct: 82 cctgccctccaggagctcacaatctagt 55
>28992_hsa-mir-708:mirbase
Length = 88
Score = 40.1 bits (20), Expect = 2e-04
Identities = 26/28 (92%)
Strand = Plus / Minus
Query: 5 cctgccctcgaggagctcacagtctagt 32
||||||||| || |||||||||||||||
Sbjct: 86 cctgccctctagaagctcacagtctagt 59
>30061_ppa-mir-28:mirbase
Length = 86
Score = 40.1 bits (20), Expect = 2e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 7 tgccctcgaggagctcacagtcta 30
||||||| ||||||||||||||||
Sbjct: 7 tgccctcaaggagctcacagtcta 30
Score = 40.1 bits (20), Expect = 2e-04
Identities = 26/28 (92%)
Strand = Plus / Minus
Query: 5 cctgccctcgaggagctcacagtctagt 32
||||||||| ||||||||||| ||||||
Sbjct: 82 cctgccctccaggagctcacaatctagt 55
>30171_ptr-mir-28:mirbase
Length = 86
Score = 40.1 bits (20), Expect = 2e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 7 tgccctcgaggagctcacagtcta 30
||||||| ||||||||||||||||
Sbjct: 7 tgccctcaaggagctcacagtcta 30
Score = 40.1 bits (20), Expect = 2e-04
Identities = 26/28 (92%)
Strand = Plus / Minus
Query: 5 cctgccctcgaggagctcacagtctagt 32
||||||||| ||||||||||| ||||||
Sbjct: 82 cctgccctccaggagctcacaatctagt 55
>30589_ptr-mir-708:mirbase
Length = 87
Score = 40.1 bits (20), Expect = 2e-04
Identities = 26/28 (92%)
Strand = Plus / Minus
Query: 5 cctgccctcgaggagctcacagtctagt 32
||||||||| || |||||||||||||||
Sbjct: 86 cctgccctctagaagctcacagtctagt 59
>30776_ppy-mir-28:mirbase
Length = 86
Score = 40.1 bits (20), Expect = 2e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 7 tgccctcgaggagctcacagtcta 30
||||||| ||||||||||||||||
Sbjct: 7 tgccctcaaggagctcacagtcta 30
Score = 40.1 bits (20), Expect = 2e-04
Identities = 26/28 (92%)
Strand = Plus / Minus
Query: 5 cctgccctcgaggagctcacagtctagt 32
||||||||| ||||||||||| ||||||
Sbjct: 82 cctgccctccaggagctcacaatctagt 55
>31237_ppy-mir-708:mirbase
Length = 88
Score = 40.1 bits (20), Expect = 2e-04
Identities = 26/28 (92%)
Strand = Plus / Minus
Query: 5 cctgccctcgaggagctcacagtctagt 32
||||||||| || |||||||||||||||
Sbjct: 86 cctgccctctagaagctcacagtctagt 59
>32328_mmu-mir-708:mirbase
Length = 109
Score = 40.1 bits (20), Expect = 2e-04
Identities = 26/28 (92%)
Strand = Plus / Minus
Query: 5 cctgccctcgaggagctcacagtctagt 32
||||||||| || |||||||||||||||
Sbjct: 102 cctgccctctagaagctcacagtctagt 75
>32682_rno-mir-28:mirbase
Length = 86
Score = 40.1 bits (20), Expect = 2e-04
Identities = 26/28 (92%)
Strand = Plus / Minus
Query: 5 cctgccctcgaggagctcacagtctagt 32
||||||||| ||||||||||| ||||||
Sbjct: 82 cctgccctccaggagctcacaatctagt 55
>32983_rno-mir-708:mirbase
Length = 88
Score = 40.1 bits (20), Expect = 2e-04
Identities = 26/28 (92%)
Strand = Plus / Minus
Query: 5 cctgccctcgaggagctcacagtctagt 32
||||||||| || |||||||||||||||
Sbjct: 86 cctgccctctagaagctcacagtctagt 59
>33157_bta-mir-28:mirbase
Length = 86
Score = 40.1 bits (20), Expect = 2e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 7 tgccctcgaggagctcacagtcta 30
||||||| ||||||||||||||||
Sbjct: 7 tgccctcaaggagctcacagtcta 30
>33933_ssc-mir-28:mirbase
Length = 86
Score = 40.1 bits (20), Expect = 2e-04
Identities = 26/28 (92%)
Strand = Plus / Minus
Query: 5 cctgccctcgaggagctcacagtctagt 32
||||||||| ||||||||||| ||||||
Sbjct: 82 cctgccctccaggagctcacaatctagt 55
>33934_ssc-mir-28:mirbase
Length = 86
Score = 40.1 bits (20), Expect = 2e-04
Identities = 26/28 (92%)
Strand = Plus / Minus
Query: 5 cctgccctcgaggagctcacagtctagt 32
||||||||| ||||||||||| ||||||
Sbjct: 82 cctgccctccaggagctcacaatctagt 55
>33449_bta-mir-708:mirbase
Length = 109
Score = 38.2 bits (19), Expect = 9e-04
Identities = 25/27 (92%)
Strand = Plus / Minus
Query: 5 cctgccctcgaggagctcacagtctag 31
||||||||| || ||||||||||||||
Sbjct: 102 cctgccctctagaagctcacagtctag 76
>34131_ssc-mir-708:mirbase
Length = 80
Score = 38.2 bits (19), Expect = 9e-04
Identities = 25/27 (92%)
Strand = Plus / Minus
Query: 6 ctgccctcgaggagctcacagtctagt 32
|||||||| || |||||||||||||||
Sbjct: 80 ctgccctctagaagctcacagtctagt 54
>34132_ssc-mir-708:mirbase
Length = 80
Score = 38.2 bits (19), Expect = 9e-04
Identities = 25/27 (92%)
Strand = Plus / Minus
Query: 6 ctgccctcgaggagctcacagtctagt 32
|||||||| || |||||||||||||||
Sbjct: 80 ctgccctctagaagctcacagtctagt 54
