miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>33239_bta-mir-152:mirbase
Length = 86
Score = 155 bits (78), Expect = 6e-39
Identities = 78/78 (100%)
Strand = Plus / Plus
Query: 1 cggcccaggttctgtgatacactccgactcgggctctggagcagtcagtgcatgacagaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9 cggcccaggttctgtgatacactccgactcgggctctggagcagtcagtgcatgacagaa 68
Query: 61 cttgggcccggacggacc 78
||||||||||||||||||
Sbjct: 69 cttgggcccggacggacc 86
>27762_mml-mir-152:mirbase
Length = 87
Score = 147 bits (74), Expect = 1e-36
Identities = 77/78 (98%)
Strand = Plus / Plus
Query: 1 cggcccaggttctgtgatacactccgactcgggctctggagcagtcagtgcatgacagaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10 cggcccaggttctgtgatacactccgactcgggctctggagcagtcagtgcatgacagaa 69
Query: 61 cttgggcccggacggacc 78
|||||||||||| |||||
Sbjct: 70 cttgggcccggaaggacc 87
>28478_hsa-mir-152:mirbase
Length = 87
Score = 147 bits (74), Expect = 1e-36
Identities = 77/78 (98%)
Strand = Plus / Plus
Query: 1 cggcccaggttctgtgatacactccgactcgggctctggagcagtcagtgcatgacagaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10 cggcccaggttctgtgatacactccgactcgggctctggagcagtcagtgcatgacagaa 69
Query: 61 cttgggcccggacggacc 78
|||||||||||| |||||
Sbjct: 70 cttgggcccggaaggacc 87
>30247_ptr-mir-152:mirbase
Length = 86
Score = 139 bits (70), Expect = 3e-34
Identities = 76/78 (97%)
Strand = Plus / Plus
Query: 1 cggcccaggttctgtgatacactccgactcgggctctggagcagtcagtgcatgacagaa 60
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9 cggcccaagttctgtgatacactccgactcgggctctggagcagtcagtgcatgacagaa 68
Query: 61 cttgggcccggacggacc 78
|||||||||||| |||||
Sbjct: 69 cttgggcccggaaggacc 86
>32759_rno-mir-152:mirbase
Length = 85
Score = 139 bits (70), Expect = 3e-34
Identities = 70/70 (100%)
Strand = Plus / Plus
Query: 2 ggcccaggttctgtgatacactccgactcgggctctggagcagtcagtgcatgacagaac 61
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10 ggcccaggttctgtgatacactccgactcgggctctggagcagtcagtgcatgacagaac 69
Query: 62 ttgggcccgg 71
||||||||||
Sbjct: 70 ttgggcccgg 79
>33784_bta-mir-2957:mirbase
Length = 71
Score = 139 bits (70), Expect = 3e-34
Identities = 70/70 (100%)
Strand = Plus / Minus
Query: 1 cggcccaggttctgtgatacactccgactcgggctctggagcagtcagtgcatgacagaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 70 cggcccaggttctgtgatacactccgactcgggctctggagcagtcagtgcatgacagaa 11
Query: 61 cttgggcccg 70
||||||||||
Sbjct: 10 cttgggcccg 1
>31888_mmu-mir-152:mirbase
Length = 73
Score = 131 bits (66), Expect = 8e-32
Identities = 69/70 (98%)
Strand = Plus / Plus
Query: 2 ggcccaggttctgtgatacactccgactcgggctctggagcagtcagtgcatgacagaac 61
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4 ggcctaggttctgtgatacactccgactcgggctctggagcagtcagtgcatgacagaac 63
Query: 62 ttgggcccgg 71
||||||||||
Sbjct: 64 ttgggcccgg 73
>26728_cfa-mir-152:mirbase
Length = 59
Score = 117 bits (59), Expect = 1e-27
Identities = 59/59 (100%)
Strand = Plus / Plus
Query: 7 aggttctgtgatacactccgactcgggctctggagcagtcagtgcatgacagaacttgg 65
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 aggttctgtgatacactccgactcgggctctggagcagtcagtgcatgacagaacttgg 59
>27400_mdo-mir-152:mirbase
Length = 73
Score = 109 bits (55), Expect = 3e-25
Identities = 64/67 (95%)
Strand = Plus / Plus
Query: 1 cggcccaggttctgtgatacactccgactcgggctctggagcagtcagtgcatgacagaa 60
||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||
Sbjct: 3 cggcccaggttctgtgatacactccgacttagactctggagcagtcagtgcatgacagaa 62
Query: 61 cttgggc 67
|||||||
Sbjct: 63 cttgggc 69
>34323_dre-mir-152:mirbase
Length = 80
Score = 50.1 bits (25), Expect = 2e-07
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 43 agtcagtgcatgacagaacttgggcccgg 71
||||||||||||||||||||| |||||||
Sbjct: 52 agtcagtgcatgacagaactttggcccgg 80
>25499_pma-mir-152a:mirbase
Length = 92
Score = 48.1 bits (24), Expect = 9e-07
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 41 gcagtcagtgcatgacagaacttg 64
||||||||||||||||||||||||
Sbjct: 54 gcagtcagtgcatgacagaacttg 77
>34321_dre-mir-148:mirbase
Length = 79
Score = 44.1 bits (22), Expect = 1e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 9 gttctgtgatacactccgactc 30
||||||||||||||||||||||
Sbjct: 14 gttctgtgatacactccgactc 35
Score = 38.2 bits (19), Expect = 9e-04
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 41 gcagtcagtgcatgacagaactt 63
||||||||||||| |||||||||
Sbjct: 45 gcagtcagtgcattacagaactt 67
>34606_fru-mir-148:mirbase
Length = 79
Score = 38.2 bits (19), Expect = 9e-04
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 41 gcagtcagtgcatgacagaactt 63
||||||||||||| |||||||||
Sbjct: 45 gcagtcagtgcattacagaactt 67
>34753_tni-mir-148:mirbase
Length = 66
Score = 38.2 bits (19), Expect = 9e-04
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 41 gcagtcagtgcatgacagaactt 63
||||||||||||| |||||||||
Sbjct: 39 gcagtcagtgcattacagaactt 61
