miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>34127_ssc-mir-664:mirbase
Length = 80
Score = 159 bits (80), Expect = 4e-40
Identities = 80/80 (100%)
Strand = Plus / Plus
Query: 1 gaacattgaaacaggctaggagaagtgattggatagaaaatggtattctattcatttatc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 gaacattgaaacaggctaggagaagtgattggatagaaaatggtattctattcatttatc 60
Query: 61 tcccagcctacaaaaagaaa 80
||||||||||||||||||||
Sbjct: 61 tcccagcctacaaaaagaaa 80
>27251_eca-mir-664:mirbase
Length = 74
Score = 99.6 bits (50), Expect = 3e-22
Identities = 68/74 (91%)
Strand = Plus / Plus
Query: 1 gaacattgaaacaggctaggagaagtgattggatagaaaatggtattctattcatttatc 60
||||||||||||||||||||| || |||||||||||||||| || ||||||||||||||
Sbjct: 1 gaacattgaaacaggctaggaaaactgattggatagaaaatattactctattcatttatc 60
Query: 61 tcccagcctacaaa 74
||| ||||||||||
Sbjct: 61 tcctagcctacaaa 74
>31231_ppy-mir-664:mirbase
Length = 82
Score = 87.7 bits (44), Expect = 1e-18
Identities = 72/80 (90%), Gaps = 1/80 (1%)
Strand = Plus / Plus
Query: 1 gaacattgaaacaggctaggagaagtgattggatagaaaatggtattctattcatttatc 60
|||||||||||| ||||||| ||||||||||||||||| | |||||||||||||||||
Sbjct: 1 gaacattgaaactggctagggaaagtgattggatagaaactattattctattcatttatc 60
Query: 61 tcccagcctacaaaaagaaa 80
|||||||||||||| ||||
Sbjct: 61 -cccagcctacaaaatgaaa 79
>28984_hsa-mir-664:mirbase
Length = 82
Score = 79.8 bits (40), Expect = 3e-16
Identities = 71/80 (88%), Gaps = 1/80 (1%)
Strand = Plus / Plus
Query: 1 gaacattgaaacaggctaggagaagtgattggatagaaaatggtattctattcatttatc 60
|||||||||||| ||||||| || |||||||||||||| | |||||||||||||||||
Sbjct: 1 gaacattgaaactggctagggaaaatgattggatagaaactattattctattcatttatc 60
Query: 61 tcccagcctacaaaaagaaa 80
|||||||||||||| ||||
Sbjct: 61 -cccagcctacaaaatgaaa 79
>30583_ptr-mir-664:mirbase
Length = 81
Score = 79.8 bits (40), Expect = 3e-16
Identities = 71/80 (88%), Gaps = 1/80 (1%)
Strand = Plus / Plus
Query: 1 gaacattgaaacaggctaggagaagtgattggatagaaaatggtattctattcatttatc 60
|||||||||||| ||||||| || |||||||||||||| | |||||||||||||||||
Sbjct: 1 gaacattgaaactggctagggaaaatgattggatagaaactattattctattcatttatc 60
Query: 61 tcccagcctacaaaaagaaa 80
|||||||||||||| ||||
Sbjct: 61 -cccagcctacaaaatgaaa 79
>26897_cfa-mir-664:mirbase
Length = 61
Score = 77.8 bits (39), Expect = 1e-15
Identities = 54/59 (91%)
Strand = Plus / Plus
Query: 14 ggctaggagaagtgattggatagaaaatggtattctattcatttatctcccagcctaca 72
|||||||| || |||||||||| ||||| |||||||||||||||||||||||||||||
Sbjct: 3 ggctaggaaaaatgattggataaaaaatattattctattcatttatctcccagcctaca 61
>28104_mml-mir-664:mirbase
Length = 58
Score = 65.9 bits (33), Expect = 4e-12
Identities = 43/45 (95%), Gaps = 1/45 (2%)
Strand = Plus / Plus
Query: 26 tgattggatagaaaatggtattctattcatttatctcccagccta 70
||||||||||||||||| ||||||||||||||||| |||||||||
Sbjct: 15 tgattggatagaaaatgttattctattcatttatc-cccagccta 58
>30584_ptr-mir-664b:mirbase
Length = 76
Score = 46.1 bits (23), Expect = 4e-06
Identities = 44/51 (86%)
Strand = Plus / Plus
Query: 26 tgattggatagaaaatggtattctattcatttatctcccagcctacaaaaa 76
||||||| |||||| | |||||||||||||| ||||| |||||||||||
Sbjct: 24 tgattgggtagaaagtattattctattcatttgcctcccggcctacaaaaa 74
>32969_rno-mir-664-2:mirbase
Length = 59
Score = 42.1 bits (21), Expect = 6e-05
Identities = 30/33 (90%)
Strand = Plus / Plus
Query: 26 tgattggatagaaaatggtattctattcattta 58
||||||||||||||| |||||||||||||||
Sbjct: 15 tgattggatagaaaacattattctattcattta 47
>32968_rno-mir-664-1:mirbase
Length = 59
Score = 40.1 bits (20), Expect = 2e-04
Identities = 29/32 (90%)
Strand = Plus / Plus
Query: 27 gattggatagaaaatggtattctattcattta 58
|||||||||||||| |||||||||||||||
Sbjct: 16 gattggatagaaaacattattctattcattta 47
>32230_mmu-mir-664:mirbase
Length = 69
Score = 38.2 bits (19), Expect = 9e-04
Identities = 37/43 (86%)
Strand = Plus / Plus
Query: 30 tggatagaaaatggtattctattcatttatctcccagcctaca 72
||||||||||| ||||||||||||||| |||||||||||
Sbjct: 19 tggatagaaaacattattctattcatttactccccagcctaca 61
