miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>34131_ssc-mir-708:mirbase
Length = 80
Score = 159 bits (80), Expect = 4e-40
Identities = 80/80 (100%)
Strand = Plus / Plus
Query: 1 ccctcaaggagcttacaatctagctgggggtgaatgacttgcacatgaacgcaactagac 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 ccctcaaggagcttacaatctagctgggggtgaatgacttgcacatgaacgcaactagac 60
Query: 61 tgtgagcttctagagggcag 80
||||||||||||||||||||
Sbjct: 61 tgtgagcttctagagggcag 80
>27259_eca-mir-708:mirbase
Length = 93
Score = 151 bits (76), Expect = 9e-38
Identities = 79/80 (98%)
Strand = Plus / Plus
Query: 1 ccctcaaggagcttacaatctagctgggggtgaatgacttgcacatgaacgcaactagac 60
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 9 ccctcaaggagcttacaatctagctgggggtaaatgacttgcacatgaacgcaactagac 68
Query: 61 tgtgagcttctagagggcag 80
||||||||||||||||||||
Sbjct: 69 tgtgagcttctagagggcag 88
>28111_mml-mir-708:mirbase
Length = 88
Score = 143 bits (72), Expect = 2e-35
Identities = 78/80 (97%)
Strand = Plus / Plus
Query: 1 ccctcaaggagcttacaatctagctgggggtgaatgacttgcacatgaacgcaactagac 60
||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||
Sbjct: 6 ccctcaaggagcttacaatctagctgggggtaaatgacttgcacatgaacacaactagac 65
Query: 61 tgtgagcttctagagggcag 80
||||||||||||||||||||
Sbjct: 66 tgtgagcttctagagggcag 85
>28992_hsa-mir-708:mirbase
Length = 88
Score = 143 bits (72), Expect = 2e-35
Identities = 78/80 (97%)
Strand = Plus / Plus
Query: 1 ccctcaaggagcttacaatctagctgggggtgaatgacttgcacatgaacgcaactagac 60
||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||
Sbjct: 6 ccctcaaggagcttacaatctagctgggggtaaatgacttgcacatgaacacaactagac 65
Query: 61 tgtgagcttctagagggcag 80
||||||||||||||||||||
Sbjct: 66 tgtgagcttctagagggcag 85
>30589_ptr-mir-708:mirbase
Length = 87
Score = 143 bits (72), Expect = 2e-35
Identities = 78/80 (97%)
Strand = Plus / Plus
Query: 1 ccctcaaggagcttacaatctagctgggggtgaatgacttgcacatgaacgcaactagac 60
||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||
Sbjct: 6 ccctcaaggagcttacaatctagctgggggtaaatgacttgcacatgaacacaactagac 65
Query: 61 tgtgagcttctagagggcag 80
||||||||||||||||||||
Sbjct: 66 tgtgagcttctagagggcag 85
>31237_ppy-mir-708:mirbase
Length = 88
Score = 143 bits (72), Expect = 2e-35
Identities = 78/80 (97%)
Strand = Plus / Plus
Query: 1 ccctcaaggagcttacaatctagctgggggtgaatgacttgcacatgaacgcaactagac 60
||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||
Sbjct: 6 ccctcaaggagcttacaatctagctgggggtaaatgacttgcacatgaacacaactagac 65
Query: 61 tgtgagcttctagagggcag 80
||||||||||||||||||||
Sbjct: 66 tgtgagcttctagagggcag 85
>33449_bta-mir-708:mirbase
Length = 109
Score = 135 bits (68), Expect = 5e-33
Identities = 77/80 (96%)
Strand = Plus / Plus
Query: 1 ccctcaaggagcttacaatctagctgggggtgaatgacttgcacatgaacgcaactagac 60
||||||||||||||||||||||||||||||| || |||||||||||||||||| ||||||
Sbjct: 22 ccctcaaggagcttacaatctagctgggggtaaacgacttgcacatgaacgcatctagac 81
Query: 61 tgtgagcttctagagggcag 80
||||||||||||||||||||
Sbjct: 82 tgtgagcttctagagggcag 101
>32328_mmu-mir-708:mirbase
Length = 109
Score = 127 bits (64), Expect = 1e-30
Identities = 76/80 (95%)
Strand = Plus / Plus
Query: 1 ccctcaaggagcttacaatctagctgggggtgaatgacttgcacatgaacgcaactagac 60
||||||||||||||||||||||||||||||| ||||||||||| ||||| |||||||||
Sbjct: 22 ccctcaaggagcttacaatctagctgggggtagatgacttgcacttgaacacaactagac 81
Query: 61 tgtgagcttctagagggcag 80
||||||||||||||||||||
Sbjct: 82 tgtgagcttctagagggcag 101
>32983_rno-mir-708:mirbase
Length = 88
Score = 127 bits (64), Expect = 1e-30
Identities = 76/80 (95%)
Strand = Plus / Plus
Query: 1 ccctcaaggagcttacaatctagctgggggtgaatgacttgcacatgaacgcaactagac 60
||||||||||||||||||||||||||||||| ||||||||||| ||||| |||||||||
Sbjct: 6 ccctcaaggagcttacaatctagctgggggtagatgacttgcacttgaacacaactagac 65
Query: 61 tgtgagcttctagagggcag 80
||||||||||||||||||||
Sbjct: 66 tgtgagcttctagagggcag 85
>26901_cfa-mir-708:mirbase
Length = 69
Score = 121 bits (61), Expect = 8e-29
Identities = 67/69 (97%)
Strand = Plus / Plus
Query: 6 aaggagcttacaatctagctgggggtgaatgacttgcacatgaacgcaactagactgtga 65
||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||
Sbjct: 1 aaggagcttacaatctagctgggggtgaacggcttgcacatgaacgcaactagactgtga 60
Query: 66 gcttctaga 74
|||||||||
Sbjct: 61 gcttctaga 69
>27055_eca-mir-151:mirbase
Length = 69
Score = 38.2 bits (19), Expect = 9e-04
Identities = 25/27 (92%)
Strand = Plus / Minus
Query: 54 actagactgtgagcttctagagggcag 80
||||||||||||||| || ||||||||
Sbjct: 28 actagactgtgagctcctcgagggcag 2
>27600_sla-mir-28:mirbase
Length = 86
Score = 38.2 bits (19), Expect = 9e-04
Identities = 22/23 (95%)
Strand = Plus / Minus
Query: 1 ccctcaaggagcttacaatctag 23
||||| |||||||||||||||||
Sbjct: 78 ccctccaggagcttacaatctag 56
>27760_mml-mir-151:mirbase
Length = 90
Score = 38.2 bits (19), Expect = 9e-04
Identities = 25/27 (92%)
Strand = Plus / Minus
Query: 54 actagactgtgagcttctagagggcag 80
||||||||||||||| || ||||||||
Sbjct: 31 actagactgtgagctcctcgagggcag 5
>27761_mml-mir-151:mirbase
Length = 90
Score = 38.2 bits (19), Expect = 9e-04
Identities = 25/27 (92%)
Strand = Plus / Minus
Query: 54 actagactgtgagcttctagagggcag 80
||||||||||||||| || ||||||||
Sbjct: 31 actagactgtgagctcctcgagggcag 5
>28475_hsa-mir-151:mirbase
Length = 90
Score = 38.2 bits (19), Expect = 9e-04
Identities = 25/27 (92%)
Strand = Plus / Minus
Query: 54 actagactgtgagcttctagagggcag 80
||||||||||||||| || ||||||||
Sbjct: 31 actagactgtgagctcctcgagggcag 5
>28476_hsa-mir-151:mirbase
Length = 90
Score = 38.2 bits (19), Expect = 9e-04
Identities = 25/27 (92%)
Strand = Plus / Minus
Query: 54 actagactgtgagcttctagagggcag 80
||||||||||||||| || ||||||||
Sbjct: 31 actagactgtgagctcctcgagggcag 5
>30246_ptr-mir-151:mirbase
Length = 89
Score = 38.2 bits (19), Expect = 9e-04
Identities = 25/27 (92%)
Strand = Plus / Minus
Query: 54 actagactgtgagcttctagagggcag 80
||||||||||||||| || ||||||||
Sbjct: 31 actagactgtgagctcctcgagggcag 5
>30859_ppy-mir-151:mirbase
Length = 89
Score = 38.2 bits (19), Expect = 9e-04
Identities = 25/27 (92%)
Strand = Plus / Minus
Query: 54 actagactgtgagcttctagagggcag 80
||||||||||||||| || ||||||||
Sbjct: 31 actagactgtgagctcctcgagggcag 5
>30860_ppy-mir-151:mirbase
Length = 89
Score = 38.2 bits (19), Expect = 9e-04
Identities = 25/27 (92%)
Strand = Plus / Minus
Query: 54 actagactgtgagcttctagagggcag 80
||||||||||||||| || ||||||||
Sbjct: 31 actagactgtgagctcctcgagggcag 5
>31886_mmu-mir-151:mirbase
Length = 68
Score = 38.2 bits (19), Expect = 9e-04
Identities = 25/27 (92%)
Strand = Plus / Minus
Query: 54 actagactgtgagcttctagagggcag 80
||||||||||||||| || ||||||||
Sbjct: 28 actagactgtgagctcctcgagggcag 2
>31887_mmu-mir-151:mirbase
Length = 68
Score = 38.2 bits (19), Expect = 9e-04
Identities = 25/27 (92%)
Strand = Plus / Minus
Query: 54 actagactgtgagcttctagagggcag 80
||||||||||||||| || ||||||||
Sbjct: 28 actagactgtgagctcctcgagggcag 2
>32758_rno-mir-151:mirbase
Length = 97
Score = 38.2 bits (19), Expect = 9e-04
Identities = 25/27 (92%)
Strand = Plus / Minus
Query: 54 actagactgtgagcttctagagggcag 80
||||||||||||||| || ||||||||
Sbjct: 36 actagactgtgagctcctcgagggcag 10
>33084_rno-mir-3586:mirbase
Length = 120
Score = 38.2 bits (19), Expect = 9e-04
Identities = 25/27 (92%)
Strand = Plus / Plus
Query: 54 actagactgtgagcttctagagggcag 80
||||||||||||||| || ||||||||
Sbjct: 62 actagactgtgagctcctcgagggcag 88
>33085_rno-mir-3586:mirbase
Length = 120
Score = 38.2 bits (19), Expect = 9e-04
Identities = 25/27 (92%)
Strand = Plus / Plus
Query: 54 actagactgtgagcttctagagggcag 80
||||||||||||||| || ||||||||
Sbjct: 62 actagactgtgagctcctcgagggcag 88
>33238_bta-mir-151:mirbase
Length = 69
Score = 38.2 bits (19), Expect = 9e-04
Identities = 25/27 (92%)
Strand = Plus / Minus
Query: 54 actagactgtgagcttctagagggcag 80
||||||||||||||| || ||||||||
Sbjct: 28 actagactgtgagctcctcgagggcag 2
>34001_ssc-mir-151:mirbase
Length = 80
Score = 38.2 bits (19), Expect = 9e-04
Identities = 25/27 (92%)
Strand = Plus / Minus
Query: 54 actagactgtgagcttctagagggcag 80
||||||||||||||| || ||||||||
Sbjct: 32 actagactgtgagctcctcgagggcag 6
>34002_ssc-mir-151:mirbase
Length = 80
Score = 38.2 bits (19), Expect = 9e-04
Identities = 25/27 (92%)
Strand = Plus / Minus
Query: 54 actagactgtgagcttctagagggcag 80
||||||||||||||| || ||||||||
Sbjct: 32 actagactgtgagctcctcgagggcag 6
