miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>33471_bta-mir-1224:mirbase
Length = 86
Score = 163 bits (82), Expect = 3e-41
Identities = 85/86 (98%)
Strand = Plus / Plus
Query: 11 gtgaggactcgggaggtggagggtggcgctgccagagccagggcactgtctcagctcgct 70
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 1 gtgaggactcgggaggtggagggtggcgctgccagggccagggcactgtctcagctcgct 60
Query: 71 tctccccccacctcctctctcctcag 96
||||||||||||||||||||||||||
Sbjct: 61 tctccccccacctcctctctcctcag 86
>31293_ppy-mir-1224:mirbase
Length = 85
Score = 123 bits (62), Expect = 3e-29
Identities = 81/86 (94%), Gaps = 1/86 (1%)
Strand = Plus / Plus
Query: 11 gtgaggactcgggaggtggagggtggcgctgccagagccagggcactgtctcagctcgct 70
||||||||||||||||||||||||||||| ||| | ||| |||| |||||||||||||||
Sbjct: 1 gtgaggactcgggaggtggagggtggcgccgccggggcc-gggcgctgtctcagctcgct 59
Query: 71 tctccccccacctcctctctcctcag 96
||||||||||||||||||||||||||
Sbjct: 60 tctccccccacctcctctctcctcag 85
>31294_ppy-mir-1224:mirbase
Length = 85
Score = 123 bits (62), Expect = 3e-29
Identities = 81/86 (94%), Gaps = 1/86 (1%)
Strand = Plus / Plus
Query: 11 gtgaggactcgggaggtggagggtggcgctgccagagccagggcactgtctcagctcgct 70
||||||||||||||||||||||||||||| ||| | ||| |||| |||||||||||||||
Sbjct: 1 gtgaggactcgggaggtggagggtggcgccgccggggcc-gggcgctgtctcagctcgct 59
Query: 71 tctccccccacctcctctctcctcag 96
||||||||||||||||||||||||||
Sbjct: 60 tctccccccacctcctctctcctcag 85
>28153_mml-mir-1224:mirbase
Length = 85
Score = 115 bits (58), Expect = 7e-27
Identities = 80/86 (93%), Gaps = 1/86 (1%)
Strand = Plus / Plus
Query: 11 gtgaggactcgggaggtggagggtggcgctgccagagccagggcactgtctcagctcgct 70
||||||||||||||||||||||||||||| ||| | |||||| | |||||| ||||||||
Sbjct: 1 gtgaggactcgggaggtggagggtggcgccgccggggccagg-cgctgtctaagctcgct 59
Query: 71 tctccccccacctcctctctcctcag 96
||||||||||||||||||||||||||
Sbjct: 60 tctccccccacctcctctctcctcag 85
>29069_hsa-mir-1224:mirbase
Length = 85
Score = 107 bits (54), Expect = 2e-24
Identities = 79/86 (91%), Gaps = 1/86 (1%)
Strand = Plus / Plus
Query: 11 gtgaggactcgggaggtggagggtggcgctgccagagccagggcactgtctcagctcgct 70
|||||||||||||||||||||||||| || ||| | ||| |||| |||| ||||||||||
Sbjct: 1 gtgaggactcgggaggtggagggtggtgccgccggggcc-gggcgctgtttcagctcgct 59
Query: 71 tctccccccacctcctctctcctcag 96
||||||||||||||||||||||||||
Sbjct: 60 tctccccccacctcctctctcctcag 85
>29070_hsa-mir-1224:mirbase
Length = 85
Score = 107 bits (54), Expect = 2e-24
Identities = 79/86 (91%), Gaps = 1/86 (1%)
Strand = Plus / Plus
Query: 11 gtgaggactcgggaggtggagggtggcgctgccagagccagggcactgtctcagctcgct 70
|||||||||||||||||||||||||| || ||| | ||| |||| |||| ||||||||||
Sbjct: 1 gtgaggactcgggaggtggagggtggtgccgccggggcc-gggcgctgtttcagctcgct 59
Query: 71 tctccccccacctcctctctcctcag 96
||||||||||||||||||||||||||
Sbjct: 60 tctccccccacctcctctctcctcag 85
>30646_ptr-mir-1224:mirbase
Length = 85
Score = 107 bits (54), Expect = 2e-24
Identities = 79/86 (91%), Gaps = 1/86 (1%)
Strand = Plus / Plus
Query: 11 gtgaggactcgggaggtggagggtggcgctgccagagccagggcactgtctcagctcgct 70
|||||||||||||||||||||||||| || ||| | ||| |||| |||| ||||||||||
Sbjct: 1 gtgaggactcgggaggtggagggtggtgccgccggggcc-gggcgctgtttcagctcgct 59
Query: 71 tctccccccacctcctctctcctcag 96
||||||||||||||||||||||||||
Sbjct: 60 tctccccccacctcctctctcctcag 85
>30647_ptr-mir-1224:mirbase
Length = 85
Score = 107 bits (54), Expect = 2e-24
Identities = 79/86 (91%), Gaps = 1/86 (1%)
Strand = Plus / Plus
Query: 11 gtgaggactcgggaggtggagggtggcgctgccagagccagggcactgtctcagctcgct 70
|||||||||||||||||||||||||| || ||| | ||| |||| |||| ||||||||||
Sbjct: 1 gtgaggactcgggaggtggagggtggtgccgccggggcc-gggcgctgtttcagctcgct 59
Query: 71 tctccccccacctcctctctcctcag 96
||||||||||||||||||||||||||
Sbjct: 60 tctccccccacctcctctctcctcag 85
>32396_mmu-mir-1224:mirbase
Length = 85
Score = 60.0 bits (30), Expect = 3e-10
Identities = 73/86 (84%), Gaps = 1/86 (1%)
Strand = Plus / Plus
Query: 11 gtgaggactcgggaggtggagggtggcgctgccagagccagggcactgtctcagctcgct 70
||||||||| |||||||||||||| || |||||||| || |||||||||||| ||
Sbjct: 1 gtgaggactggggaggtggagggtagcatcattagagccagagctctgtctcagctccct 60
Query: 71 tctccccccacctcctctctcctcag 96
||||||||||||| |||||||||||
Sbjct: 61 -ctccccccacctcttctctcctcag 85
>33015_rno-mir-1224:mirbase
Length = 85
Score = 60.0 bits (30), Expect = 3e-10
Identities = 73/86 (84%), Gaps = 1/86 (1%)
Strand = Plus / Plus
Query: 11 gtgaggactcgggaggtggagggtggcgctgccagagccagggcactgtctcagctcgct 70
||||||||| |||||||||||||| | | |||||||| || |||||||||||| ||
Sbjct: 1 gtgaggactggggaggtggagggtagtaccattagagccagagctctgtctcagctccct 60
Query: 71 tctccccccacctcctctctcctcag 96
||||||||||||| |||||||||||
Sbjct: 61 -ctccccccacctcttctctcctcag 85
