miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>33478_bta-mir-1271:mirbase
Length = 86
Score = 145 bits (73), Expect = 5e-36
Identities = 76/77 (98%)
Strand = Plus / Plus
Query: 2 agatcagtgcttggcacctagtaagcactcagtatatacttgttgagtgcctgctatgtg 61
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 6 agatcagtgcttggcacctagtaagtactcagtatatacttgttgagtgcctgctatgtg 65
Query: 62 ccaggcattgtgctgag 78
|||||||||||||||||
Sbjct: 66 ccaggcattgtgctgag 82
>30686_ptr-mir-1271:mirbase
Length = 85
Score = 137 bits (69), Expect = 1e-33
Identities = 75/77 (97%)
Strand = Plus / Plus
Query: 2 agatcagtgcttggcacctagtaagcactcagtatatacttgttgagtgcctgctatgtg 61
||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||
Sbjct: 5 agatcagtgcttggcacctagcaagcactcagtaaatacttgttgagtgcctgctatgtg 64
Query: 62 ccaggcattgtgctgag 78
|||||||||||||||||
Sbjct: 65 ccaggcattgtgctgag 81
>31331_ppy-mir-1271:mirbase
Length = 86
Score = 137 bits (69), Expect = 1e-33
Identities = 75/77 (97%)
Strand = Plus / Plus
Query: 2 agatcagtgcttggcacctagtaagcactcagtatatacttgttgagtgcctgctatgtg 61
||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||
Sbjct: 6 agatcagtgcttggcacctagcaagcactcagtaaatacttgttgagtgcctgctatgtg 65
Query: 62 ccaggcattgtgctgag 78
|||||||||||||||||
Sbjct: 66 ccaggcattgtgctgag 82
>29122_hsa-mir-1271:mirbase
Length = 86
Score = 129 bits (65), Expect = 3e-31
Identities = 74/77 (96%)
Strand = Plus / Plus
Query: 2 agatcagtgcttggcacctagtaagcactcagtatatacttgttgagtgcctgctatgtg 61
||||||||||||||||||||| |||||||||||| ||| |||||||||||||||||||||
Sbjct: 6 agatcagtgcttggcacctagcaagcactcagtaaatatttgttgagtgcctgctatgtg 65
Query: 62 ccaggcattgtgctgag 78
|||||||||||||||||
Sbjct: 66 ccaggcattgtgctgag 82
>26913_cfa-mir-1271:mirbase
Length = 58
Score = 107 bits (54), Expect = 1e-24
Identities = 57/58 (98%)
Strand = Plus / Plus
Query: 11 cttggcacctagtaagcactcagtatatacttgttgagtgcctgctatgtgccaggca 68
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 1 cttggcacctagtaagcactcagtaaatacttgttgagtgcctgctatgtgccaggca 58
>27292_eca-mir-1271:mirbase
Length = 57
Score = 89.7 bits (45), Expect = 3e-19
Identities = 54/57 (94%)
Strand = Plus / Plus
Query: 11 cttggcacctagtaagcactcagtatatacttgttgagtgcctgctatgtgccaggc 67
|||||||||| |||||||||||||| |||||||||||||||||||| ||||||||||
Sbjct: 1 cttggcacctcgtaagcactcagtaaatacttgttgagtgcctgctgtgtgccaggc 57
