miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>34146_ssc-mir-1306:mirbase
Length = 80
Score = 159 bits (80), Expect = 4e-40
Identities = 80/80 (100%)
Strand = Plus / Plus
Query: 1 gtctccaccacctcccctgcaaacgtccagtgatgcagaggtaatggacgttggctctgg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 gtctccaccacctcccctgcaaacgtccagtgatgcagaggtaatggacgttggctctgg 60
Query: 61 tggtgatggacaggccgaac 80
||||||||||||||||||||
Sbjct: 61 tggtgatggacaggccgaac 80
>32403_mmu-mir-1306:mirbase
Length = 79
Score = 145 bits (73), Expect = 5e-36
Identities = 73/73 (100%)
Strand = Plus / Plus
Query: 1 gtctccaccacctcccctgcaaacgtccagtgatgcagaggtaatggacgttggctctgg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3 gtctccaccacctcccctgcaaacgtccagtgatgcagaggtaatggacgttggctctgg 62
Query: 61 tggtgatggacag 73
|||||||||||||
Sbjct: 63 tggtgatggacag 75
>32404_mmu-mir-1306:mirbase
Length = 79
Score = 145 bits (73), Expect = 5e-36
Identities = 73/73 (100%)
Strand = Plus / Plus
Query: 1 gtctccaccacctcccctgcaaacgtccagtgatgcagaggtaatggacgttggctctgg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3 gtctccaccacctcccctgcaaacgtccagtgatgcagaggtaatggacgttggctctgg 62
Query: 61 tggtgatggacag 73
|||||||||||||
Sbjct: 63 tggtgatggacag 75
>29173_hsa-mir-1306:mirbase
Length = 85
Score = 139 bits (70), Expect = 3e-34
Identities = 76/78 (97%)
Strand = Plus / Plus
Query: 1 gtctccaccacctcccctgcaaacgtccagtgatgcagaggtaatggacgttggctctgg 60
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 8 gtctccaccacctcccctgcaaacgtccagtggtgcagaggtaatggacgttggctctgg 67
Query: 61 tggtgatggacaggccga 78
||||||||||||| ||||
Sbjct: 68 tggtgatggacagtccga 85
>30723_ptr-mir-1306:mirbase
Length = 84
Score = 139 bits (70), Expect = 3e-34
Identities = 76/78 (97%)
Strand = Plus / Plus
Query: 1 gtctccaccacctcccctgcaaacgtccagtgatgcagaggtaatggacgttggctctgg 60
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 7 gtctccaccacctcccctgcaaacgtccagtggtgcagaggtaatggacgttggctctgg 66
Query: 61 tggtgatggacaggccga 78
||||||||||||| ||||
Sbjct: 67 tggtgatggacagtccga 84
>31364_ppy-mir-1306:mirbase
Length = 85
Score = 139 bits (70), Expect = 3e-34
Identities = 76/78 (97%)
Strand = Plus / Plus
Query: 1 gtctccaccacctcccctgcaaacgtccagtgatgcagaggtaatggacgttggctctgg 60
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 8 gtctccaccacctcccctgcaaacgtccagtggtgcagaggtaatggacgttggctctgg 67
Query: 61 tggtgatggacaggccga 78
||||||||||||| ||||
Sbjct: 68 tggtgatggacagtccga 85
>25675_xla-mir-1306:mirbase
Length = 85
Score = 133 bits (67), Expect = 2e-32
Identities = 70/71 (98%)
Strand = Plus / Plus
Query: 3 ctccaccacctcccctgcaaacgtccagtgatgcagaggtaatggacgttggctctggtg 62
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 10 ctccaccacctcccctgcaaacgtccagtgacgcagaggtaatggacgttggctctggtg 69
Query: 63 gtgatggacag 73
|||||||||||
Sbjct: 70 gtgatggacag 80
>26047_gga-mir-1306:mirbase
Length = 69
Score = 129 bits (65), Expect = 3e-31
Identities = 68/69 (98%)
Strand = Plus / Plus
Query: 4 tccaccacctcccctgcaaacgtccagtgatgcagaggtaatggacgttggctctggtgg 63
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 1 tccaccacctcccctgcaaacgtccagtgacgcagaggtaatggacgttggctctggtgg 60
Query: 64 tgatggaca 72
|||||||||
Sbjct: 61 tgatggaca 69
>26914_cfa-mir-1306:mirbase
Length = 58
Score = 115 bits (58), Expect = 5e-27
Identities = 58/58 (100%)
Strand = Plus / Plus
Query: 8 ccacctcccctgcaaacgtccagtgatgcagaggtaatggacgttggctctggtggtg 65
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 ccacctcccctgcaaacgtccagtgatgcagaggtaatggacgttggctctggtggtg 58
>33487_bta-mir-1306:mirbase
Length = 58
Score = 115 bits (58), Expect = 5e-27
Identities = 58/58 (100%)
Strand = Plus / Plus
Query: 8 ccacctcccctgcaaacgtccagtgatgcagaggtaatggacgttggctctggtggtg 65
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 ccacctcccctgcaaacgtccagtgatgcagaggtaatggacgttggctctggtggtg 58
