miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>34150_ssc-mir-1839:mirbase
Length = 80
Score = 159 bits (80), Expect = 4e-40
Identities = 80/80 (100%)
Strand = Plus / Plus
Query: 1 cctaaatgaaaaggtagatagaacaggtcttgtttgcaagatgaattcaagacctacttt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 cctaaatgaaaaggtagatagaacaggtcttgtttgcaagatgaattcaagacctacttt 60
Query: 61 tctaccaacagcaattacac 80
||||||||||||||||||||
Sbjct: 61 tctaccaacagcaattacac 80
>33503_bta-mir-1839:mirbase
Length = 72
Score = 117 bits (59), Expect = 1e-27
Identities = 68/71 (95%)
Strand = Plus / Plus
Query: 5 aatgaaaaggtagatagaacaggtcttgtttgcaagatgaattcaagacctacttttcta 64
||||||||||||||||||||||||||||| ||||| ||||||||||||||||||| ||||
Sbjct: 1 aatgaaaaggtagatagaacaggtcttgtgtgcaaaatgaattcaagacctacttatcta 60
Query: 65 ccaacagcaat 75
|||||||||||
Sbjct: 61 ccaacagcaat 71
>32405_mmu-mir-1839:mirbase
Length = 73
Score = 105 bits (53), Expect = 5e-24
Identities = 62/65 (95%)
Strand = Plus / Plus
Query: 8 gaaaaggtagatagaacaggtcttgtttgcaagatgaattcaagacctacttttctacca 67
|||||||||||||||||||||||||||||||| || |||||||||||||||| |||||||
Sbjct: 1 gaaaaggtagatagaacaggtcttgtttgcaaaataaattcaagacctacttatctacca 60
Query: 68 acagc 72
|||||
Sbjct: 61 acagc 65
>32406_mmu-mir-1839:mirbase
Length = 73
Score = 105 bits (53), Expect = 5e-24
Identities = 62/65 (95%)
Strand = Plus / Plus
Query: 8 gaaaaggtagatagaacaggtcttgtttgcaagatgaattcaagacctacttttctacca 67
|||||||||||||||||||||||||||||||| || |||||||||||||||| |||||||
Sbjct: 1 gaaaaggtagatagaacaggtcttgtttgcaaaataaattcaagacctacttatctacca 60
Query: 68 acagc 72
|||||
Sbjct: 61 acagc 65
>27309_eca-mir-1839:mirbase
Length = 60
Score = 95.6 bits (48), Expect = 4e-21
Identities = 57/60 (95%)
Strand = Plus / Plus
Query: 11 aaggtagatagaacaggtcttgtttgcaagatgaattcaagacctacttttctaccaaca 70
||||||||||||||||||||||||||||| || |||||||||||||||| ||||||||||
Sbjct: 1 aaggtagatagaacaggtcttgtttgcaaaataaattcaagacctacttatctaccaaca 60
>26923_cfa-mir-1839:mirbase
Length = 73
Score = 91.7 bits (46), Expect = 7e-20
Identities = 65/70 (92%), Gaps = 1/70 (1%)
Strand = Plus / Plus
Query: 8 gaaaaggtagatagaacaggtcttgtttgcaagatgaattcaagacctactt-ttctacc 66
||||||||||||||||||||||||||| |||| || |||||||||||||||| ||||||
Sbjct: 4 gaaaaggtagatagaacaggtcttgttagcaaaataaattcaagacctacttaatctacc 63
Query: 67 aacagcaatt 76
||||||||||
Sbjct: 64 aacagcaatt 73
