miRNEST 2.0, an integrative microRNA resource :: BLAST
>34528_fru-let-7b:mirbase
Length = 84
Score = 151 bits (76), Expect = 1e-37
Identities = 82/84 (97%)
Strand = Plus / Plus
Query: 6 cagggtgaggtagtaggttgtgtggtttcagggttgtgtttttgccccatcaggagttaa 65
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||
Sbjct: 1 cagggtgaggtagtaggttgtgtggtttcagggttgtgattttgccccatcaggagctaa 60
Query: 66 ctatacaacctactgccttccctg 89
||||||||||||||||||||||||
Sbjct: 61 ctatacaacctactgccttccctg 84
>34676_tni-let-7b:mirbase
Length = 84
Score = 151 bits (76), Expect = 1e-37
Identities = 82/84 (97%)
Strand = Plus / Plus
Query: 6 cagggtgaggtagtaggttgtgtggtttcagggttgtgtttttgccccatcaggagttaa 65
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||
Sbjct: 1 cagggtgaggtagtaggttgtgtggtttcagggttgtgattttgccccatcaggagctaa 60
Query: 66 ctatacaacctactgccttccctg 89
||||||||||||||||||||||||
Sbjct: 61 ctatacaacctactgccttccctg 84
>26379_tgu-let-7b:mirbase
Length = 92
Score = 125 bits (63), Expect = 6e-30
Identities = 82/87 (94%), Gaps = 1/87 (1%)
Strand = Plus / Plus
Query: 5 acagggtgaggtagtaggttgtgtggtttcagggttgtgtttttgcccc-atcaggagtt 63
||||| ||||||||||||||||||||||||||||| ||| ||||||||| |||||||| |
Sbjct: 5 acaggatgaggtagtaggttgtgtggtttcagggtagtgattttgccccaatcaggagat 64
Query: 64 aactatacaacctactgccttccctga 90
|||||||||||||||||||||||||||
Sbjct: 65 aactatacaacctactgccttccctga 91
>25871_gga-let-7b:mirbase
Length = 85
Score = 121 bits (61), Expect = 9e-29
Identities = 80/85 (94%), Gaps = 1/85 (1%)
Strand = Plus / Plus
Query: 6 cagggtgaggtagtaggttgtgtggtttcagggttgtgtttttgcccc-atcaggagtta 64
|||| ||||||||||||||||||||||||||||| ||| ||||||||| |||||||| ||
Sbjct: 1 caggatgaggtagtaggttgtgtggtttcagggtagtgattttgccccaatcaggagata 60
Query: 65 actatacaacctactgccttccctg 89
|||||||||||||||||||||||||
Sbjct: 61 actatacaacctactgccttccctg 85
>27321_mdo-let-7b:mirbase
Length = 88
Score = 119 bits (60), Expect = 4e-28
Identities = 79/84 (94%), Gaps = 1/84 (1%)
Strand = Plus / Plus
Query: 8 gggtgaggtagtaggttgtgtggtttcagggttgtgtttttgcccc-atcaggagttaac 66
|||||||||||||||||||||||||||||||| ||| ||||||||| ||||| || ||||
Sbjct: 5 gggtgaggtagtaggttgtgtggtttcagggtagtgattttgccccaatcagaagataac 64
Query: 67 tatacaacctactgccttccctga 90
||||||||||||||||||||||||
Sbjct: 65 tatacaacctactgccttccctga 88
>33111_bta-let-7b:mirbase
Length = 81
Score = 101 bits (51), Expect = 9e-23
Identities = 72/79 (91%)
Strand = Plus / Plus
Query: 8 gggtgaggtagtaggttgtgtggtttcagggttgtgtttttgccccatcaggagttaact 67
|||||||||||||||||||||||||||||||| ||| | ||||||| || | || |||||
Sbjct: 3 gggtgaggtagtaggttgtgtggtttcagggtagtgatgttgccccctcggaagataact 62
Query: 68 atacaacctactgccttcc 86
|||||||||||||||||||
Sbjct: 63 atacaacctactgccttcc 81
>27632_mml-let-7b:mirbase
Length = 83
Score = 99.6 bits (50), Expect = 3e-22
Identities = 75/82 (91%), Gaps = 1/82 (1%)
Strand = Plus / Plus
Query: 8 gggtgaggtagtaggttgtgtggtttcagggttgtgtttttgccccatcaggagttaact 67
||||||||||||||||||||||||||||||| ||| | ||||||| |||| || |||||
Sbjct: 3 gggtgaggtagtaggttgtgtggtttcagggcagtgatgttgcccc-tcagaagataact 61
Query: 68 atacaacctactgccttccctg 89
||||||||||||||||||||||
Sbjct: 62 atacaacctactgccttccctg 83
>30129_ptr-let-7b:mirbase
Length = 82
Score = 99.6 bits (50), Expect = 3e-22
Identities = 75/82 (91%), Gaps = 1/82 (1%)
Strand = Plus / Plus
Query: 8 gggtgaggtagtaggttgtgtggtttcagggttgtgtttttgccccatcaggagttaact 67
||||||||||||||||||||||||||||||| ||| | ||||||| |||| || |||||
Sbjct: 2 gggtgaggtagtaggttgtgtggtttcagggcagtgatgttgcccc-tcagaagataact 60
Query: 68 atacaacctactgccttccctg 89
||||||||||||||||||||||
Sbjct: 61 atacaacctactgccttccctg 82
>30734_ppy-let-7b:mirbase
Length = 83
Score = 99.6 bits (50), Expect = 3e-22
Identities = 75/82 (91%), Gaps = 1/82 (1%)
Strand = Plus / Plus
Query: 8 gggtgaggtagtaggttgtgtggtttcagggttgtgtttttgccccatcaggagttaact 67
||||||||||||||||||||||||||||||| ||| | ||||||| |||| || |||||
Sbjct: 3 gggtgaggtagtaggttgtgtggtttcagggcagtgatgttgcccc-tcagaagataact 61
Query: 68 atacaacctactgccttccctg 89
||||||||||||||||||||||
Sbjct: 62 atacaacctactgccttccctg 83
>33789_bta-mir-3596:mirbase
Length = 83
Score = 99.6 bits (50), Expect = 3e-22
Identities = 71/78 (91%)
Strand = Plus / Minus
Query: 9 ggtgaggtagtaggttgtgtggtttcagggttgtgtttttgccccatcaggagttaacta 68
||||||||||||||||||||||||||||||| ||| | ||||||| || | || ||||||
Sbjct: 83 ggtgaggtagtaggttgtgtggtttcagggtagtgatgttgccccctcggaagataacta 24
Query: 69 tacaacctactgccttcc 86
||||||||||||||||||
Sbjct: 23 tacaacctactgccttcc 6
>31754_mmu-let-7b:mirbase
Length = 85
Score = 97.6 bits (49), Expect = 1e-21
Identities = 77/85 (90%), Gaps = 1/85 (1%)
Strand = Plus / Plus
Query: 6 cagggtgaggtagtaggttgtgtggtttcagggttgtgtttttgccccatcaggagttaa 65
||||||||||||||||||||||||||||||||| ||| | ||||||| || | || |||
Sbjct: 2 cagggtgaggtagtaggttgtgtggtttcagggcagtgatgttgcccc-tccgaagataa 60
Query: 66 ctatacaacctactgccttccctga 90
|||||||||||||||||||||||||
Sbjct: 61 ctatacaacctactgccttccctga 85
>28342_hsa-let-7b:mirbase
Length = 83
Score = 91.7 bits (46), Expect = 8e-20
Identities = 74/82 (90%), Gaps = 1/82 (1%)
Strand = Plus / Plus
Query: 8 gggtgaggtagtaggttgtgtggtttcagggttgtgtttttgccccatcaggagttaact 67
||||||||||||||||||||||||||||||| ||| | ||||||| || | || |||||
Sbjct: 3 gggtgaggtagtaggttgtgtggtttcagggcagtgatgttgcccc-tcggaagataact 61
Query: 68 atacaacctactgccttccctg 89
||||||||||||||||||||||
Sbjct: 62 atacaacctactgccttccctg 83
>31410_oan-let-7b:mirbase
Length = 82
Score = 91.7 bits (46), Expect = 8e-20
Identities = 71/78 (91%), Gaps = 1/78 (1%)
Strand = Plus / Plus
Query: 11 tgaggtagtaggttgtgtggtttcagggttgtgtttttgcccc-atcaggagttaactat 69
|||||||||||||||||||||||||||| ||| ||||||||| ||||| || |||||||
Sbjct: 5 tgaggtagtaggttgtgtggtttcaggggagtgattttgccccaatcagaagataactat 64
Query: 70 acaacctactgccttccc 87
||| ||||||||||||||
Sbjct: 65 acagcctactgccttccc 82
>32640_rno-let-7b:mirbase
Length = 85
Score = 85.7 bits (43), Expect = 5e-18
Identities = 74/83 (89%), Gaps = 1/83 (1%)
Strand = Plus / Plus
Query: 8 gggtgaggtagtaggttgtgtggtttcagggttgtgtttttgccccatcaggagttaact 67
||||||||||||||||||||||||||||||| ||| | | ||||| || | || |||||
Sbjct: 4 gggtgaggtagtaggttgtgtggtttcagggcagtgatgtcgcccc-tccgaagataact 62
Query: 68 atacaacctactgccttccctga 90
|||||||||||||||||||||||
Sbjct: 63 atacaacctactgccttccctga 85
>26607_cfa-let-7b:mirbase
Length = 69
Score = 61.9 bits (31), Expect = 7e-11
Identities = 31/31 (100%)
Strand = Plus / Plus
Query: 8 gggtgaggtagtaggttgtgtggtttcaggg 38
|||||||||||||||||||||||||||||||
Sbjct: 37 gggtgaggtagtaggttgtgtggtttcaggg 67
>25874_gga-let-7f:mirbase
Length = 87
Score = 48.1 bits (24), Expect = 1e-06
Identities = 33/36 (91%)
Strand = Plus / Plus
Query: 55 tcaggagttaactatacaacctactgccttccctga 90
||||||| ||||||||||| ||| ||||||||||||
Sbjct: 52 tcaggagataactatacaatctattgccttccctga 87
>26384_tgu-let-7f:mirbase
Length = 92
Score = 48.1 bits (24), Expect = 1e-06
Identities = 33/36 (91%)
Strand = Plus / Plus
Query: 55 tcaggagttaactatacaacctactgccttccctga 90
||||||| ||||||||||| ||| ||||||||||||
Sbjct: 56 tcaggagataactatacaatctattgccttccctga 91
>26934_eca-let-7f:mirbase
Length = 87
Score = 48.1 bits (24), Expect = 1e-06
Identities = 33/36 (91%)
Strand = Plus / Plus
Query: 55 tcaggagttaactatacaacctactgccttccctga 90
||||||| ||||||||||| ||| ||||||||||||
Sbjct: 52 tcaggagataactatacaatctattgccttccctga 87
>27322_mdo-let-7d:mirbase
Length = 106
Score = 48.1 bits (24), Expect = 1e-06
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 57 aggagttaactatacaacctactgcctt 84
|||||||||||||||||||| |||||||
Sbjct: 61 aggagttaactatacaacctgctgcctt 88
>27323_mdo-let-7f-1:mirbase
Length = 87
Score = 48.1 bits (24), Expect = 1e-06
Identities = 33/36 (91%)
Strand = Plus / Plus
Query: 55 tcaggagttaactatacaacctactgccttccctga 90
||||||| ||||||||||| ||| ||||||||||||
Sbjct: 52 tcaggagataactatacaatctattgccttccctga 87
>27636_mml-let-7f-1:mirbase
Length = 87
Score = 48.1 bits (24), Expect = 1e-06
Identities = 33/36 (91%)
Strand = Plus / Plus
Query: 55 tcaggagttaactatacaacctactgccttccctga 90
||||||| ||||||||||| ||| ||||||||||||
Sbjct: 52 tcaggagataactatacaatctattgccttccctga 87
>28346_hsa-let-7f-1:mirbase
Length = 87
Score = 48.1 bits (24), Expect = 1e-06
Identities = 33/36 (91%)
Strand = Plus / Plus
Query: 55 tcaggagttaactatacaacctactgccttccctga 90
||||||| ||||||||||| ||| ||||||||||||
Sbjct: 52 tcaggagataactatacaatctattgccttccctga 87
>30133_ptr-let-7f-1:mirbase
Length = 86
Score = 48.1 bits (24), Expect = 1e-06
Identities = 33/36 (91%)
Strand = Plus / Plus
Query: 55 tcaggagttaactatacaacctactgccttccctga 90
||||||| ||||||||||| ||| ||||||||||||
Sbjct: 51 tcaggagataactatacaatctattgccttccctga 86
>30738_ppy-let-7f-1:mirbase
Length = 87
Score = 48.1 bits (24), Expect = 1e-06
Identities = 33/36 (91%)
Strand = Plus / Plus
Query: 55 tcaggagttaactatacaacctactgccttccctga 90
||||||| ||||||||||| ||| ||||||||||||
Sbjct: 52 tcaggagataactatacaatctattgccttccctga 87
>33115_bta-let-7f-1:mirbase
Length = 87
Score = 48.1 bits (24), Expect = 1e-06
Identities = 33/36 (91%)
Strand = Plus / Plus
Query: 55 tcaggagttaactatacaacctactgccttccctga 90
||||||| ||||||||||| ||| ||||||||||||
Sbjct: 52 tcaggagataactatacaatctattgccttccctga 87
>34532_fru-let-7h:mirbase
Length = 84
Score = 48.1 bits (24), Expect = 1e-06
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 55 tcaggagttaactatacaacctactgccttcc 86
||||||| |||||||||||| |||||||||||
Sbjct: 52 tcaggagataactatacaacttactgccttcc 83
>31756_mmu-let-7c-2:mirbase
Length = 95
Score = 44.1 bits (22), Expect = 2e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 8 gggtgaggtagtaggttgtgtggttt 33
||||||||||||||||||| ||||||
Sbjct: 11 gggtgaggtagtaggttgtatggttt 36
>31759_mmu-let-7f-1:mirbase
Length = 89
Score = 44.1 bits (22), Expect = 2e-05
Identities = 31/34 (91%)
Strand = Plus / Plus
Query: 57 aggagttaactatacaacctactgccttccctga 90
||||| ||||||||||| ||| ||||||||||||
Sbjct: 55 aggagataactatacaatctattgccttccctga 88
>32642_rno-let-7c-2:mirbase
Length = 95
Score = 44.1 bits (22), Expect = 2e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 8 gggtgaggtagtaggttgtgtggttt 33
||||||||||||||||||| ||||||
Sbjct: 11 gggtgaggtagtaggttgtatggttt 36
>32645_rno-let-7f-1:mirbase
Length = 89
Score = 44.1 bits (22), Expect = 2e-05
Identities = 31/34 (91%)
Strand = Plus / Plus
Query: 57 aggagttaactatacaacctactgccttccctga 90
||||| ||||||||||| ||| ||||||||||||
Sbjct: 55 aggagataactatacaatctattgccttccctga 88
>33101_rno-mir-3596d:mirbase
Length = 97
Score = 44.1 bits (22), Expect = 2e-05
Identities = 31/34 (91%)
Strand = Plus / Minus
Query: 57 aggagttaactatacaacctactgccttccctga 90
||||| ||||||||||| ||| ||||||||||||
Sbjct: 39 aggagataactatacaatctattgccttccctga 6
>34680_tni-let-7h:mirbase
Length = 99
Score = 44.1 bits (22), Expect = 2e-05
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 57 aggagttaactatacaacctactgccttcc 86
||||| |||||||||||| |||||||||||
Sbjct: 69 aggagataactatacaacttactgccttcc 98
>25409_pma-let-7a-2:mirbase
Length = 103
Score = 42.1 bits (21), Expect = 7e-05
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 11 tgaggtagtaggttgtgtggtttcagggt 39
|||||||||||||||| | ||||||||||
Sbjct: 17 tgaggtagtaggttgtatagtttcagggt 45
>25753_xtr-mir-98:mirbase
Length = 108
Score = 42.1 bits (21), Expect = 7e-05
Identities = 30/33 (90%)
Strand = Plus / Plus
Query: 57 aggagttaactatacaacctactgccttccctg 89
||||| |||||||||| | ||||||||||||||
Sbjct: 64 aggagataactatacagcttactgccttccctg 96
>25870_gga-let-7a-3:mirbase
Length = 76
Score = 42.1 bits (21), Expect = 7e-05
Identities = 30/33 (90%)
Strand = Plus / Plus
Query: 8 gggtgaggtagtaggttgtgtggtttcagggtt 40
||||||||||||||||||| | |||| ||||||
Sbjct: 1 gggtgaggtagtaggttgtatagttttagggtt 33
>26610_cfa-let-7f:mirbase
Length = 78
Score = 42.1 bits (21), Expect = 7e-05
Identities = 30/33 (90%)
Strand = Plus / Plus
Query: 55 tcaggagttaactatacaacctactgccttccc 87
||||||| ||||||||||| ||| |||||||||
Sbjct: 46 tcaggagataactatacaatctattgccttccc 78
>31411_oan-let-7d:mirbase
Length = 116
Score = 42.1 bits (21), Expect = 7e-05
Identities = 61/73 (83%), Gaps = 1/73 (1%)
Strand = Plus / Plus
Query: 12 gaggtagtaggttgtgtggtttcagggttgtgtttttgccccatcaggagttaactatac 71
|||||||||||||| | |||| |||| ||| |||||| | || ||| |||||||||||
Sbjct: 25 gaggtagtaggttgcatagttttagggcagtgattttgctc-ataaggtgttaactatac 83
Query: 72 aacctactgcctt 84
||||| |||||||
Sbjct: 84 aacctgctgcctt 96
>31413_oan-let-7f-1:mirbase
Length = 149
Score = 42.1 bits (21), Expect = 7e-05
Identities = 30/33 (90%)
Strand = Plus / Plus
Query: 58 ggagttaactatacaacctactgccttccctga 90
|||| ||||||||||| ||| ||||||||||||
Sbjct: 79 ggagataactatacaatctattgccttccctga 111
>34167_dre-let-7a-3:mirbase
Length = 107
Score = 42.1 bits (21), Expect = 7e-05
Identities = 30/33 (90%)
Strand = Plus / Plus
Query: 8 gggtgaggtagtaggttgtgtggtttcagggtt 40
||||||||||||||||||| | |||| ||||||
Sbjct: 15 gggtgaggtagtaggttgtatagtttgagggtt 47
>34173_dre-let-7c-2:mirbase
Length = 92
Score = 42.1 bits (21), Expect = 7e-05
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 6 cagggtgaggtagtaggttgtgtggtttc 34
|||| |||||||||||||||| |||||||
Sbjct: 10 caggctgaggtagtaggttgtatggtttc 38
>34526_fru-let-7a-2:mirbase
Length = 76
Score = 42.1 bits (21), Expect = 7e-05
Identities = 30/33 (90%)
Strand = Plus / Plus
Query: 8 gggtgaggtagtaggttgtgtggtttcagggtt 40
||||||||||||||||||| | |||| ||||||
Sbjct: 1 gggtgaggtagtaggttgtatagttttagggtt 33
>34673_tni-let-7a-1:mirbase
Length = 74
Score = 42.1 bits (21), Expect = 7e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 6 cagggtgaggtagtaggttgt 26
|||||||||||||||||||||
Sbjct: 1 cagggtgaggtagtaggttgt 21
>34674_tni-let-7a-2:mirbase
Length = 84
Score = 42.1 bits (21), Expect = 7e-05
Identities = 30/33 (90%)
Strand = Plus / Plus
Query: 8 gggtgaggtagtaggttgtgtggtttcagggtt 40
||||||||||||||||||| | |||| ||||||
Sbjct: 9 gggtgaggtagtaggttgtatagttttagggtt 41
>25413_pma-let-7c:mirbase
Length = 96
Score = 40.1 bits (20), Expect = 3e-04
Identities = 29/32 (90%)
Strand = Plus / Plus
Query: 8 gggtgaggtagtaggttgtgtggtttcagggt 39
|||||||||||||| |||| |||||| |||||
Sbjct: 11 gggtgaggtagtagattgtatggttttagggt 42
>25678_xtr-let-7c:mirbase
Length = 94
Score = 40.1 bits (20), Expect = 3e-04
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 6 cagggtgaggtagtaggttgtgtggttt 33
|||| |||||||||||||||| ||||||
Sbjct: 11 caggttgaggtagtaggttgtatggttt 38
>25873_gga-let-7d:mirbase
Length = 103
Score = 40.1 bits (20), Expect = 3e-04
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 57 aggagttaactatacaacctactgcctt 84
||||| |||||||||||||| |||||||
Sbjct: 61 aggaggtaactatacaacctgctgcctt 88
>26382_tgu-let-7d:mirbase
Length = 92
Score = 40.1 bits (20), Expect = 3e-04
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 57 aggagttaactatacaacctactgcctt 84
||||| |||||||||||||| |||||||
Sbjct: 56 aggaggtaactatacaacctgctgcctt 83
>31757_mmu-let-7d:mirbase
Length = 103
Score = 40.1 bits (20), Expect = 3e-04
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 57 aggagttaactatacaacctactgcctt 84
||||||||||||||| |||| |||||||
Sbjct: 61 aggagttaactatacgacctgctgcctt 88
>32643_rno-let-7d:mirbase
Length = 98
Score = 40.1 bits (20), Expect = 3e-04
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 57 aggagttaactatacaacctactgcctt 84
||||||||||||||| |||| |||||||
Sbjct: 59 aggagttaactatacgacctgctgcctt 86
>33099_rno-mir-3596b:mirbase
Length = 95
Score = 40.1 bits (20), Expect = 3e-04
Identities = 26/28 (92%)
Strand = Plus / Minus
Query: 57 aggagttaactatacaacctactgcctt 84
||||||||||||||| |||| |||||||
Sbjct: 38 aggagttaactatacgacctgctgcctt 11
>34169_dre-let-7a-5:mirbase
Length = 124
Score = 40.1 bits (20), Expect = 3e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 3 ggacagggtgaggtagtaggttgt 26
||||| ||||||||||||||||||
Sbjct: 20 ggacaaggtgaggtagtaggttgt 43
>34172_dre-let-7c-1:mirbase
Length = 107
Score = 40.1 bits (20), Expect = 3e-04
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 6 cagggtgaggtagtaggttgtgtggttt 33
|||| |||||||||||||||| ||||||
Sbjct: 18 caggctgaggtagtaggttgtatggttt 45
>34178_dre-let-7f:mirbase
Length = 116
Score = 40.1 bits (20), Expect = 3e-04
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 63 taactatacaacctactgccttccctga 90
||||||||||| ||| ||||||||||||
Sbjct: 73 taactatacaatctattgccttccctga 100
