miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>34529_fru-let-7d:mirbase
Length = 96
Score = 133 bits (67), Expect = 3e-32
Identities = 76/79 (96%)
Strand = Plus / Plus
Query: 12 gtgtgaggtagttggttgtatggttttgcataataaacagcccggagttaactgtacaac 71
|||||||||||||||||||||||||| |||||||||||||| ||||| ||||||||||||
Sbjct: 12 gtgtgaggtagttggttgtatggtttcgcataataaacagcacggagataactgtacaac 71
Query: 72 cttctagctttccctgcgg 90
|||||||||||||||||||
Sbjct: 72 cttctagctttccctgcgg 90
>34677_tni-let-7d:mirbase
Length = 96
Score = 133 bits (67), Expect = 3e-32
Identities = 76/79 (96%)
Strand = Plus / Plus
Query: 12 gtgtgaggtagttggttgtatggttttgcataataaacagcccggagttaactgtacaac 71
|||||||||||||||||||||||||| |||||||||||||| ||||| ||||||||||||
Sbjct: 12 gtgtgaggtagttggttgtatggtttcgcataataaacagcacggagataactgtacaac 71
Query: 72 cttctagctttccctgcgg 90
|||||||||||||||||||
Sbjct: 72 cttctagctttccctgcgg 90
>34175_dre-let-7d-2:mirbase
Length = 88
Score = 127 bits (64), Expect = 2e-30
Identities = 73/76 (96%)
Strand = Plus / Plus
Query: 15 tgaggtagttggttgtatggttttgcataataaacagcccggagttaactgtacaacctt 74
|||||||||||||||||||||||||||| |||| ||||| ||||||||||||||||||||
Sbjct: 11 tgaggtagttggttgtatggttttgcatcataatcagcctggagttaactgtacaacctt 70
Query: 75 ctagctttccctgcgg 90
||||||||||||||||
Sbjct: 71 ctagctttccctgcgg 86
>25678_xtr-let-7c:mirbase
Length = 94
Score = 60.0 bits (30), Expect = 3e-10
Identities = 30/30 (100%)
Strand = Plus / Plus
Query: 55 ggagttaactgtacaaccttctagctttcc 84
||||||||||||||||||||||||||||||
Sbjct: 53 ggagttaactgtacaaccttctagctttcc 82
>25872_gga-let-7c:mirbase
Length = 84
Score = 60.0 bits (30), Expect = 3e-10
Identities = 30/30 (100%)
Strand = Plus / Plus
Query: 55 ggagttaactgtacaaccttctagctttcc 84
||||||||||||||||||||||||||||||
Sbjct: 48 ggagttaactgtacaaccttctagctttcc 77
>26380_tgu-let-7c-1:mirbase
Length = 92
Score = 60.0 bits (30), Expect = 3e-10
Identities = 30/30 (100%)
Strand = Plus / Plus
Query: 55 ggagttaactgtacaaccttctagctttcc 84
||||||||||||||||||||||||||||||
Sbjct: 48 ggagttaactgtacaaccttctagctttcc 77
>26381_tgu-let-7c-2:mirbase
Length = 92
Score = 60.0 bits (30), Expect = 3e-10
Identities = 30/30 (100%)
Strand = Plus / Plus
Query: 55 ggagttaactgtacaaccttctagctttcc 84
||||||||||||||||||||||||||||||
Sbjct: 48 ggagttaactgtacaaccttctagctttcc 77
>26608_cfa-let-7c:mirbase
Length = 67
Score = 60.0 bits (30), Expect = 3e-10
Identities = 30/30 (100%)
Strand = Plus / Plus
Query: 55 ggagttaactgtacaaccttctagctttcc 84
||||||||||||||||||||||||||||||
Sbjct: 38 ggagttaactgtacaaccttctagctttcc 67
>26931_eca-let-7c:mirbase
Length = 71
Score = 60.0 bits (30), Expect = 3e-10
Identities = 30/30 (100%)
Strand = Plus / Plus
Query: 55 ggagttaactgtacaaccttctagctttcc 84
||||||||||||||||||||||||||||||
Sbjct: 41 ggagttaactgtacaaccttctagctttcc 70
>27633_mml-let-7c:mirbase
Length = 84
Score = 60.0 bits (30), Expect = 3e-10
Identities = 30/30 (100%)
Strand = Plus / Plus
Query: 55 ggagttaactgtacaaccttctagctttcc 84
||||||||||||||||||||||||||||||
Sbjct: 48 ggagttaactgtacaaccttctagctttcc 77
>28343_hsa-let-7c:mirbase
Length = 84
Score = 60.0 bits (30), Expect = 3e-10
Identities = 30/30 (100%)
Strand = Plus / Plus
Query: 55 ggagttaactgtacaaccttctagctttcc 84
||||||||||||||||||||||||||||||
Sbjct: 48 ggagttaactgtacaaccttctagctttcc 77
>30130_ptr-let-7c:mirbase
Length = 83
Score = 60.0 bits (30), Expect = 3e-10
Identities = 30/30 (100%)
Strand = Plus / Plus
Query: 55 ggagttaactgtacaaccttctagctttcc 84
||||||||||||||||||||||||||||||
Sbjct: 47 ggagttaactgtacaaccttctagctttcc 76
>30735_ppy-let-7c:mirbase
Length = 84
Score = 60.0 bits (30), Expect = 3e-10
Identities = 30/30 (100%)
Strand = Plus / Plus
Query: 55 ggagttaactgtacaaccttctagctttcc 84
||||||||||||||||||||||||||||||
Sbjct: 48 ggagttaactgtacaaccttctagctttcc 77
>31755_mmu-let-7c-1:mirbase
Length = 94
Score = 60.0 bits (30), Expect = 3e-10
Identities = 30/30 (100%)
Strand = Plus / Plus
Query: 55 ggagttaactgtacaaccttctagctttcc 84
||||||||||||||||||||||||||||||
Sbjct: 53 ggagttaactgtacaaccttctagctttcc 82
>32641_rno-let-7c-1:mirbase
Length = 94
Score = 60.0 bits (30), Expect = 3e-10
Identities = 30/30 (100%)
Strand = Plus / Plus
Query: 55 ggagttaactgtacaaccttctagctttcc 84
||||||||||||||||||||||||||||||
Sbjct: 53 ggagttaactgtacaaccttctagctttcc 82
>33112_bta-let-7c:mirbase
Length = 84
Score = 60.0 bits (30), Expect = 3e-10
Identities = 30/30 (100%)
Strand = Plus / Plus
Query: 55 ggagttaactgtacaaccttctagctttcc 84
||||||||||||||||||||||||||||||
Sbjct: 48 ggagttaactgtacaaccttctagctttcc 77
>33900_ssc-let-7c:mirbase
Length = 94
Score = 60.0 bits (30), Expect = 3e-10
Identities = 30/30 (100%)
Strand = Plus / Plus
Query: 55 ggagttaactgtacaaccttctagctttcc 84
||||||||||||||||||||||||||||||
Sbjct: 53 ggagttaactgtacaaccttctagctttcc 82
>34172_dre-let-7c-1:mirbase
Length = 107
Score = 60.0 bits (30), Expect = 3e-10
Identities = 30/30 (100%)
Strand = Plus / Plus
Query: 55 ggagttaactgtacaaccttctagctttcc 84
||||||||||||||||||||||||||||||
Sbjct: 60 ggagttaactgtacaaccttctagctttcc 89
>34173_dre-let-7c-2:mirbase
Length = 92
Score = 60.0 bits (30), Expect = 3e-10
Identities = 30/30 (100%)
Strand = Plus / Plus
Query: 55 ggagttaactgtacaaccttctagctttcc 84
||||||||||||||||||||||||||||||
Sbjct: 52 ggagttaactgtacaaccttctagctttcc 81
>25411_pma-let-7a-4:mirbase
Length = 85
Score = 58.0 bits (29), Expect = 1e-09
Identities = 35/37 (94%)
Strand = Plus / Plus
Query: 54 cggagttaactgtacaaccttctagctttccctgcgg 90
||||| |||||||||||||||||||||||||| ||||
Sbjct: 47 cggagataactgtacaaccttctagctttccccgcgg 83
>38846_lgi-let-7:mirbase
Length = 101
Score = 54.0 bits (27), Expect = 2e-08
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 61 aactgtacaaccttctagctttccctg 87
|||||||||||||||||||||||||||
Sbjct: 65 aactgtacaaccttctagctttccctg 91
>34166_dre-let-7a-2:mirbase
Length = 84
Score = 50.1 bits (25), Expect = 3e-07
Identities = 31/33 (93%)
Strand = Plus / Plus
Query: 55 ggagttaactgtacaaccttctagctttccctg 87
|||| |||||||||||||| |||||||||||||
Sbjct: 48 ggagataactgtacaacctcctagctttccctg 80
>25869_gga-let-7a-2:mirbase
Length = 72
Score = 44.1 bits (22), Expect = 2e-05
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 55 ggagttaactgtacaaccttctagctttcc 84
|||| |||||||||||||| ||||||||||
Sbjct: 42 ggagataactgtacaacctcctagctttcc 71
>26376_tgu-let-7a-2:mirbase
Length = 92
Score = 44.1 bits (22), Expect = 2e-05
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 55 ggagttaactgtacaaccttctagctttcc 84
|||| |||||||||||||| ||||||||||
Sbjct: 48 ggagataactgtacaacctcctagctttcc 77
>31756_mmu-let-7c-2:mirbase
Length = 95
Score = 44.1 bits (22), Expect = 2e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 14 gtgaggtagttggttgtatggttttg 39
|||||||||| |||||||||||||||
Sbjct: 13 gtgaggtagtaggttgtatggttttg 38
>32642_rno-let-7c-2:mirbase
Length = 95
Score = 44.1 bits (22), Expect = 2e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 14 gtgaggtagttggttgtatggttttg 39
|||||||||| |||||||||||||||
Sbjct: 13 gtgaggtagtaggttgtatggttttg 38
>38718_cte-let-7:mirbase
Length = 103
Score = 40.1 bits (20), Expect = 3e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 61 aactgtacaaccttctagctttcc 84
||||||||| ||||||||||||||
Sbjct: 65 aactgtacagccttctagctttcc 88
>25317_csa-let-7d:mirbase
Length = 102
Score = 40.1 bits (20), Expect = 3e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 15 tgaggtagttggttgtatggtttt 38
|||||||||||||||||| |||||
Sbjct: 16 tgaggtagttggttgtattgtttt 39
>34673_tni-let-7a-1:mirbase
Length = 74
Score = 40.1 bits (20), Expect = 3e-04
Identities = 29/32 (90%)
Strand = Plus / Plus
Query: 55 ggagttaactgtacaaccttctagctttccct 86
|||| |||||||||| ||| ||||||||||||
Sbjct: 43 ggagataactgtacagcctcctagctttccct 74
