miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>34174_dre-let-7d-1:mirbase
Length = 97
Score = 127 bits (64), Expect = 1e-30
Identities = 73/76 (96%)
Strand = Plus / Plus
Query: 11 tgaggtagttggttgtatggttttgcatcataatcagcctggagttaactgtacaacctt 70
|||||||||||||||||||||||||||| |||| ||||| ||||||||||||||||||||
Sbjct: 15 tgaggtagttggttgtatggttttgcataataaacagcccggagttaactgtacaacctt 74
Query: 71 ctagctttccctgcgg 86
||||||||||||||||
Sbjct: 75 ctagctttccctgcgg 90
>34529_fru-let-7d:mirbase
Length = 96
Score = 103 bits (52), Expect = 2e-23
Identities = 70/76 (92%)
Strand = Plus / Plus
Query: 11 tgaggtagttggttgtatggttttgcatcataatcagcctggagttaactgtacaacctt 70
||||||||||||||||||||||| |||| |||| |||| |||| |||||||||||||||
Sbjct: 15 tgaggtagttggttgtatggtttcgcataataaacagcacggagataactgtacaacctt 74
Query: 71 ctagctttccctgcgg 86
||||||||||||||||
Sbjct: 75 ctagctttccctgcgg 90
>34677_tni-let-7d:mirbase
Length = 96
Score = 103 bits (52), Expect = 2e-23
Identities = 70/76 (92%)
Strand = Plus / Plus
Query: 11 tgaggtagttggttgtatggttttgcatcataatcagcctggagttaactgtacaacctt 70
||||||||||||||||||||||| |||| |||| |||| |||| |||||||||||||||
Sbjct: 15 tgaggtagttggttgtatggtttcgcataataaacagcacggagataactgtacaacctt 74
Query: 71 ctagctttccctgcgg 86
||||||||||||||||
Sbjct: 75 ctagctttccctgcgg 90
>25678_xtr-let-7c:mirbase
Length = 94
Score = 60.0 bits (30), Expect = 3e-10
Identities = 30/30 (100%)
Strand = Plus / Plus
Query: 51 ggagttaactgtacaaccttctagctttcc 80
||||||||||||||||||||||||||||||
Sbjct: 53 ggagttaactgtacaaccttctagctttcc 82
>25872_gga-let-7c:mirbase
Length = 84
Score = 60.0 bits (30), Expect = 3e-10
Identities = 30/30 (100%)
Strand = Plus / Plus
Query: 51 ggagttaactgtacaaccttctagctttcc 80
||||||||||||||||||||||||||||||
Sbjct: 48 ggagttaactgtacaaccttctagctttcc 77
>26380_tgu-let-7c-1:mirbase
Length = 92
Score = 60.0 bits (30), Expect = 3e-10
Identities = 30/30 (100%)
Strand = Plus / Plus
Query: 51 ggagttaactgtacaaccttctagctttcc 80
||||||||||||||||||||||||||||||
Sbjct: 48 ggagttaactgtacaaccttctagctttcc 77
>26381_tgu-let-7c-2:mirbase
Length = 92
Score = 60.0 bits (30), Expect = 3e-10
Identities = 30/30 (100%)
Strand = Plus / Plus
Query: 51 ggagttaactgtacaaccttctagctttcc 80
||||||||||||||||||||||||||||||
Sbjct: 48 ggagttaactgtacaaccttctagctttcc 77
>26608_cfa-let-7c:mirbase
Length = 67
Score = 60.0 bits (30), Expect = 3e-10
Identities = 30/30 (100%)
Strand = Plus / Plus
Query: 51 ggagttaactgtacaaccttctagctttcc 80
||||||||||||||||||||||||||||||
Sbjct: 38 ggagttaactgtacaaccttctagctttcc 67
>26931_eca-let-7c:mirbase
Length = 71
Score = 60.0 bits (30), Expect = 3e-10
Identities = 30/30 (100%)
Strand = Plus / Plus
Query: 51 ggagttaactgtacaaccttctagctttcc 80
||||||||||||||||||||||||||||||
Sbjct: 41 ggagttaactgtacaaccttctagctttcc 70
>27633_mml-let-7c:mirbase
Length = 84
Score = 60.0 bits (30), Expect = 3e-10
Identities = 30/30 (100%)
Strand = Plus / Plus
Query: 51 ggagttaactgtacaaccttctagctttcc 80
||||||||||||||||||||||||||||||
Sbjct: 48 ggagttaactgtacaaccttctagctttcc 77
>28343_hsa-let-7c:mirbase
Length = 84
Score = 60.0 bits (30), Expect = 3e-10
Identities = 30/30 (100%)
Strand = Plus / Plus
Query: 51 ggagttaactgtacaaccttctagctttcc 80
||||||||||||||||||||||||||||||
Sbjct: 48 ggagttaactgtacaaccttctagctttcc 77
>30130_ptr-let-7c:mirbase
Length = 83
Score = 60.0 bits (30), Expect = 3e-10
Identities = 30/30 (100%)
Strand = Plus / Plus
Query: 51 ggagttaactgtacaaccttctagctttcc 80
||||||||||||||||||||||||||||||
Sbjct: 47 ggagttaactgtacaaccttctagctttcc 76
>30735_ppy-let-7c:mirbase
Length = 84
Score = 60.0 bits (30), Expect = 3e-10
Identities = 30/30 (100%)
Strand = Plus / Plus
Query: 51 ggagttaactgtacaaccttctagctttcc 80
||||||||||||||||||||||||||||||
Sbjct: 48 ggagttaactgtacaaccttctagctttcc 77
>31755_mmu-let-7c-1:mirbase
Length = 94
Score = 60.0 bits (30), Expect = 3e-10
Identities = 30/30 (100%)
Strand = Plus / Plus
Query: 51 ggagttaactgtacaaccttctagctttcc 80
||||||||||||||||||||||||||||||
Sbjct: 53 ggagttaactgtacaaccttctagctttcc 82
>32641_rno-let-7c-1:mirbase
Length = 94
Score = 60.0 bits (30), Expect = 3e-10
Identities = 30/30 (100%)
Strand = Plus / Plus
Query: 51 ggagttaactgtacaaccttctagctttcc 80
||||||||||||||||||||||||||||||
Sbjct: 53 ggagttaactgtacaaccttctagctttcc 82
>33112_bta-let-7c:mirbase
Length = 84
Score = 60.0 bits (30), Expect = 3e-10
Identities = 30/30 (100%)
Strand = Plus / Plus
Query: 51 ggagttaactgtacaaccttctagctttcc 80
||||||||||||||||||||||||||||||
Sbjct: 48 ggagttaactgtacaaccttctagctttcc 77
>33900_ssc-let-7c:mirbase
Length = 94
Score = 60.0 bits (30), Expect = 3e-10
Identities = 30/30 (100%)
Strand = Plus / Plus
Query: 51 ggagttaactgtacaaccttctagctttcc 80
||||||||||||||||||||||||||||||
Sbjct: 53 ggagttaactgtacaaccttctagctttcc 82
>34172_dre-let-7c-1:mirbase
Length = 107
Score = 60.0 bits (30), Expect = 3e-10
Identities = 30/30 (100%)
Strand = Plus / Plus
Query: 51 ggagttaactgtacaaccttctagctttcc 80
||||||||||||||||||||||||||||||
Sbjct: 60 ggagttaactgtacaaccttctagctttcc 89
>34173_dre-let-7c-2:mirbase
Length = 92
Score = 60.0 bits (30), Expect = 3e-10
Identities = 30/30 (100%)
Strand = Plus / Plus
Query: 51 ggagttaactgtacaaccttctagctttcc 80
||||||||||||||||||||||||||||||
Sbjct: 52 ggagttaactgtacaaccttctagctttcc 81
>25411_pma-let-7a-4:mirbase
Length = 85
Score = 56.0 bits (28), Expect = 4e-09
Identities = 34/36 (94%)
Strand = Plus / Plus
Query: 51 ggagttaactgtacaaccttctagctttccctgcgg 86
|||| |||||||||||||||||||||||||| ||||
Sbjct: 48 ggagataactgtacaaccttctagctttccccgcgg 83
>38846_lgi-let-7:mirbase
Length = 101
Score = 54.0 bits (27), Expect = 2e-08
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 57 aactgtacaaccttctagctttccctg 83
|||||||||||||||||||||||||||
Sbjct: 65 aactgtacaaccttctagctttccctg 91
>34166_dre-let-7a-2:mirbase
Length = 84
Score = 54.0 bits (27), Expect = 2e-08
Identities = 33/35 (94%)
Strand = Plus / Plus
Query: 49 ctggagttaactgtacaaccttctagctttccctg 83
|||||| |||||||||||||| |||||||||||||
Sbjct: 46 ctggagataactgtacaacctcctagctttccctg 80
>24802_cin-let-7d:mirbase
Length = 101
Score = 44.1 bits (22), Expect = 2e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 8 ggctgaggtagttggttgtatggttt 33
||||||||||||||||||||| ||||
Sbjct: 13 ggctgaggtagttggttgtattgttt 38
>25869_gga-let-7a-2:mirbase
Length = 72
Score = 44.1 bits (22), Expect = 2e-05
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 51 ggagttaactgtacaaccttctagctttcc 80
|||| |||||||||||||| ||||||||||
Sbjct: 42 ggagataactgtacaacctcctagctttcc 71
>26376_tgu-let-7a-2:mirbase
Length = 92
Score = 44.1 bits (22), Expect = 2e-05
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 51 ggagttaactgtacaaccttctagctttcc 80
|||| |||||||||||||| ||||||||||
Sbjct: 48 ggagataactgtacaacctcctagctttcc 77
>24803_cin-let-7e:mirbase
Length = 98
Score = 42.1 bits (21), Expect = 6e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 8 ggctgaggtagttggttgtat 28
|||||||||||||||||||||
Sbjct: 13 ggctgaggtagttggttgtat 33
>31756_mmu-let-7c-2:mirbase
Length = 95
Score = 42.1 bits (21), Expect = 6e-05
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 11 tgaggtagttggttgtatggttttg 35
||||||||| |||||||||||||||
Sbjct: 14 tgaggtagtaggttgtatggttttg 38
>32642_rno-let-7c-2:mirbase
Length = 95
Score = 42.1 bits (21), Expect = 6e-05
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 11 tgaggtagttggttgtatggttttg 35
||||||||| |||||||||||||||
Sbjct: 14 tgaggtagtaggttgtatggttttg 38
>38718_cte-let-7:mirbase
Length = 103
Score = 40.1 bits (20), Expect = 3e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 57 aactgtacaaccttctagctttcc 80
||||||||| ||||||||||||||
Sbjct: 65 aactgtacagccttctagctttcc 88
>25317_csa-let-7d:mirbase
Length = 102
Score = 40.1 bits (20), Expect = 3e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 11 tgaggtagttggttgtatggtttt 34
|||||||||||||||||| |||||
Sbjct: 16 tgaggtagttggttgtattgtttt 39
>32639_rno-let-7a-2:mirbase
Length = 96
Score = 40.1 bits (20), Expect = 3e-04
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 6 caggctgaggtagttggttgtatggttt 33
|||||||||||||| |||||||| ||||
Sbjct: 12 caggctgaggtagtaggttgtatagttt 39
>33098_rno-mir-3596a:mirbase
Length = 114
Score = 40.1 bits (20), Expect = 3e-04
Identities = 26/28 (92%)
Strand = Plus / Minus
Query: 6 caggctgaggtagttggttgtatggttt 33
|||||||||||||| |||||||| ||||
Sbjct: 93 caggctgaggtagtaggttgtatagttt 66
>34673_tni-let-7a-1:mirbase
Length = 74
Score = 40.1 bits (20), Expect = 3e-04
Identities = 29/32 (90%)
Strand = Plus / Plus
Query: 51 ggagttaactgtacaaccttctagctttccct 82
|||| |||||||||| ||| ||||||||||||
Sbjct: 43 ggagataactgtacagcctcctagctttccct 74
