miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>34680_tni-let-7h:mirbase
Length = 99
Score = 87.7 bits (44), Expect = 2e-18
Identities = 83/96 (86%)
Strand = Plus / Plus
Query: 4 ttggctgtgttgtggtgaggtagtaagttgtgttgttgttggggatcagtatagtatggc 63
|||||| || |||||||||||||||||||||||||||||||||||||| || || |
Sbjct: 3 ttggctttgctgtggtgaggtagtaagttgtgttgttgttggggatcaagattgtgcacc 62
Query: 64 ccttgaaggagataactatacaatttactgccttcc 99
| | |||||||||||||||||| ||||||||||||
Sbjct: 63 ctgtcaaggagataactatacaacttactgccttcc 98
>34532_fru-let-7h:mirbase
Length = 84
Score = 61.9 bits (31), Expect = 9e-11
Identities = 34/35 (97%)
Strand = Plus / Plus
Query: 14 tgtggtgaggtagtaagttgtgttgttgttgggga 48
||||||||||||||||||||||||||||| |||||
Sbjct: 1 tgtggtgaggtagtaagttgtgttgttgtagggga 35
Score = 52.0 bits (26), Expect = 9e-08
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 70 aggagataactatacaatttactgccttcc 99
||||||||||||||||| ||||||||||||
Sbjct: 54 aggagataactatacaacttactgccttcc 83
>25753_xtr-mir-98:mirbase
Length = 108
Score = 44.1 bits (22), Expect = 2e-05
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 70 aggagataactatacaatttactgccttcc 99
|||||||||||||||| ||||||||||||
Sbjct: 64 aggagataactatacagcttactgccttcc 93
Score = 42.1 bits (21), Expect = 9e-05
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 19 tgaggtagtaagttgtgttgttgttgggg 47
|||||||||||||||| ||||||| ||||
Sbjct: 17 tgaggtagtaagttgtattgttgtggggg 45
>25871_gga-let-7b:mirbase
Length = 85
Score = 44.1 bits (22), Expect = 2e-05
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 70 aggagataactatacaatttactgccttcc 99
||||||||||||||||| |||||||||||
Sbjct: 53 aggagataactatacaacctactgccttcc 82
>25874_gga-let-7f:mirbase
Length = 87
Score = 44.1 bits (22), Expect = 2e-05
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 70 aggagataactatacaatttactgccttcc 99
|||||||||||||||||| || ||||||||
Sbjct: 54 aggagataactatacaatctattgccttcc 83
>26379_tgu-let-7b:mirbase
Length = 92
Score = 44.1 bits (22), Expect = 2e-05
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 70 aggagataactatacaatttactgccttcc 99
||||||||||||||||| |||||||||||
Sbjct: 58 aggagataactatacaacctactgccttcc 87
>26384_tgu-let-7f:mirbase
Length = 92
Score = 44.1 bits (22), Expect = 2e-05
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 70 aggagataactatacaatttactgccttcc 99
|||||||||||||||||| || ||||||||
Sbjct: 58 aggagataactatacaatctattgccttcc 87
>26610_cfa-let-7f:mirbase
Length = 78
Score = 44.1 bits (22), Expect = 2e-05
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 70 aggagataactatacaatttactgccttcc 99
|||||||||||||||||| || ||||||||
Sbjct: 48 aggagataactatacaatctattgccttcc 77
>26934_eca-let-7f:mirbase
Length = 87
Score = 44.1 bits (22), Expect = 2e-05
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 70 aggagataactatacaatttactgccttcc 99
|||||||||||||||||| || ||||||||
Sbjct: 54 aggagataactatacaatctattgccttcc 83
>26994_eca-mir-98:mirbase
Length = 119
Score = 44.1 bits (22), Expect = 2e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 17 ggtgaggtagtaagttgtgttgttgt 42
|||||||||||||||||| |||||||
Sbjct: 20 ggtgaggtagtaagttgtattgttgt 45
>27323_mdo-let-7f-1:mirbase
Length = 87
Score = 44.1 bits (22), Expect = 2e-05
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 70 aggagataactatacaatttactgccttcc 99
|||||||||||||||||| || ||||||||
Sbjct: 54 aggagataactatacaatctattgccttcc 83
>27636_mml-let-7f-1:mirbase
Length = 87
Score = 44.1 bits (22), Expect = 2e-05
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 70 aggagataactatacaatttactgccttcc 99
|||||||||||||||||| || ||||||||
Sbjct: 54 aggagataactatacaatctattgccttcc 83
>28346_hsa-let-7f-1:mirbase
Length = 87
Score = 44.1 bits (22), Expect = 2e-05
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 70 aggagataactatacaatttactgccttcc 99
|||||||||||||||||| || ||||||||
Sbjct: 54 aggagataactatacaatctattgccttcc 83
>28411_hsa-mir-98:mirbase
Length = 119
Score = 44.1 bits (22), Expect = 2e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 17 ggtgaggtagtaagttgtgttgttgt 42
|||||||||||||||||| |||||||
Sbjct: 20 ggtgaggtagtaagttgtattgttgt 45
>30133_ptr-let-7f-1:mirbase
Length = 86
Score = 44.1 bits (22), Expect = 2e-05
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 70 aggagataactatacaatttactgccttcc 99
|||||||||||||||||| || ||||||||
Sbjct: 53 aggagataactatacaatctattgccttcc 82
>30195_ptr-mir-98:mirbase
Length = 119
Score = 44.1 bits (22), Expect = 2e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 17 ggtgaggtagtaagttgtgttgttgt 42
|||||||||||||||||| |||||||
Sbjct: 20 ggtgaggtagtaagttgtattgttgt 45
>30738_ppy-let-7f-1:mirbase
Length = 87
Score = 44.1 bits (22), Expect = 2e-05
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 70 aggagataactatacaatttactgccttcc 99
|||||||||||||||||| || ||||||||
Sbjct: 54 aggagataactatacaatctattgccttcc 83
>31759_mmu-let-7f-1:mirbase
Length = 89
Score = 44.1 bits (22), Expect = 2e-05
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 70 aggagataactatacaatttactgccttcc 99
|||||||||||||||||| || ||||||||
Sbjct: 55 aggagataactatacaatctattgccttcc 84
>31824_mmu-mir-98:mirbase
Length = 108
Score = 44.1 bits (22), Expect = 2e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 17 ggtgaggtagtaagttgtgttgttgt 42
|||||||||||||||||| |||||||
Sbjct: 14 ggtgaggtagtaagttgtattgttgt 39
>32645_rno-let-7f-1:mirbase
Length = 89
Score = 44.1 bits (22), Expect = 2e-05
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 70 aggagataactatacaatttactgccttcc 99
|||||||||||||||||| || ||||||||
Sbjct: 55 aggagataactatacaatctattgccttcc 84
>32705_rno-mir-98:mirbase
Length = 108
Score = 44.1 bits (22), Expect = 2e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 17 ggtgaggtagtaagttgtgttgttgt 42
|||||||||||||||||| |||||||
Sbjct: 14 ggtgaggtagtaagttgtattgttgt 39
>33101_rno-mir-3596d:mirbase
Length = 97
Score = 44.1 bits (22), Expect = 2e-05
Identities = 28/30 (93%)
Strand = Plus / Minus
Query: 70 aggagataactatacaatttactgccttcc 99
|||||||||||||||||| || ||||||||
Sbjct: 39 aggagataactatacaatctattgccttcc 10
>33115_bta-let-7f-1:mirbase
Length = 87
Score = 44.1 bits (22), Expect = 2e-05
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 70 aggagataactatacaatttactgccttcc 99
|||||||||||||||||| || ||||||||
Sbjct: 54 aggagataactatacaatctattgccttcc 83
>33184_bta-mir-98:mirbase
Length = 119
Score = 44.1 bits (22), Expect = 2e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 17 ggtgaggtagtaagttgtgttgttgt 42
|||||||||||||||||| |||||||
Sbjct: 20 ggtgaggtagtaagttgtattgttgt 45
>33955_ssc-mir-98:mirbase
Length = 80
Score = 44.1 bits (22), Expect = 2e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 17 ggtgaggtagtaagttgtgttgttgt 42
|||||||||||||||||| |||||||
Sbjct: 2 ggtgaggtagtaagttgtattgttgt 27
>27500_age-mir-98:mirbase
Length = 80
Score = 42.1 bits (21), Expect = 9e-05
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 18 gtgaggtagtaagttgtgttgttgt 42
||||||||||||||||| |||||||
Sbjct: 1 gtgaggtagtaagttgtattgttgt 25
>27701_mml-mir-98:mirbase
Length = 80
Score = 42.1 bits (21), Expect = 9e-05
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 18 gtgaggtagtaagttgtgttgttgt 42
||||||||||||||||| |||||||
Sbjct: 1 gtgaggtagtaagttgtattgttgt 25
>28291_ggo-mir-98:mirbase
Length = 80
Score = 42.1 bits (21), Expect = 9e-05
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 18 gtgaggtagtaagttgtgttgttgt 42
||||||||||||||||| |||||||
Sbjct: 1 gtgaggtagtaagttgtattgttgt 25
>30078_ppa-mir-98:mirbase
Length = 80
Score = 42.1 bits (21), Expect = 9e-05
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 18 gtgaggtagtaagttgtgttgttgt 42
||||||||||||||||| |||||||
Sbjct: 1 gtgaggtagtaagttgtattgttgt 25
>30801_ppy-mir-98:mirbase
Length = 80
Score = 42.1 bits (21), Expect = 9e-05
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 18 gtgaggtagtaagttgtgttgttgt 42
||||||||||||||||| |||||||
Sbjct: 1 gtgaggtagtaagttgtattgttgt 25
>31413_oan-let-7f-1:mirbase
Length = 149
Score = 42.1 bits (21), Expect = 9e-05
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 71 ggagataactatacaatttactgccttcc 99
||||||||||||||||| || ||||||||
Sbjct: 79 ggagataactatacaatctattgccttcc 107
>26672_cfa-mir-98:mirbase
Length = 80
Score = 40.1 bits (20), Expect = 3e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 19 tgaggtagtaagttgtgttgttgt 42
|||||||||||||||| |||||||
Sbjct: 1 tgaggtagtaagttgtattgttgt 24
>31469_oan-mir-98:mirbase
Length = 149
Score = 40.1 bits (20), Expect = 3e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 19 tgaggtagtaagttgtgttgttgt 42
|||||||||||||||| |||||||
Sbjct: 31 tgaggtagtaagttgtattgttgt 54
